Annotation Summary for Cell Line: SW837  

Cell line primary name: SW837
Cell line aliases:
Gender: M
Site Primary: large_intestine
Histology: carcinoma
Hist Subtype1: adenocarcinoma
Notes:
Source: ATCC
Expression arrays: CRAZY_p_NCLE_RNA10_HG-U133_Plus_2_D12_569532
SNP arrays: AWASH_p_NCLE_DNAAffy10_GenomeWideSNP_6_H09_542854
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in SW837

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 SW837_LARGE_INT... 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ABL2 1 179086419 179086420 SW837_LARGE_INT... 37 Intron Ins - A rs72207641 uc001gmj.3 ABL2_uc010pnf.1... Hybrid_Cap...
ACACA 17 35766564 35766564 SW837_LARGE_INT... 37 5'UTR Del A - uc002hno.2 ACACA_uc002hnn.... Hybrid_Cap...
ACVR2A p.R88_splice 2 148657025 148657025 SW837_LARGE_INT... 37 Splice_Site_SNP SNP A G uc002twg.2 ACVR2A_uc010zbn... Hybrid_Cap... view
ADAM17 2 9630245 9630245 SW837_LARGE_INT... 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADCK1 p.R317Q 14 78390891 78390891 SW837_LARGE_INT... 37 Missense_Mutation SNP G A uc001xui.2 ADCK1_uc010tvo.... Hybrid_Cap... view
AKAP6 p.E2028Q 14 33293101 33293101 SW837_LARGE_INT... 37 Missense_Mutation SNP G C uc001wrq.2 Hybrid_Cap... view
AKAP9 p.1335_1336insQ 7 91652178 91652179 SW837_LARGE_INT... 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALPK1 4 113347609 113347610 SW837_LARGE_INT... 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ALPK1 p.T1106I 4 113359768 113359768 SW837_LARGE_INT... 37 Missense_Mutation SNP C T uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap... view
ALPK2 p.EDTST1006del 18 56204388 56204402 SW837_LARGE_INT... 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
APC p.R213* 5 112116592 112116592 SW837_LARGE_INT... 37 Nonsense_Mutation SNP C T uc010jby.2 APC_uc011cvt.1_... Hybrid_Cap... view
APC p.R1450* 5 112175639 112175639 SW837_LARGE_INT... 37 Nonsense_Mutation SNP C T uc010jby.2 APC_uc011cvt.1_... Hybrid_Cap... view
AURKC 19 57742494 57742507 SW837_LARGE_INT... 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BAI3 p.S911Y 6 69949036 69949036 SW837_LARGE_INT... 37 Missense_Mutation SNP C A uc003pev.3 BAI3_uc010kak.2... Hybrid_Cap... view
CACNB2 p.M281L 10 18807301 18807301 SW837_LARGE_INT... 37 Missense_Mutation SNP A T uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap... view
CDK11B 1 1654066 1654068 SW837_LARGE_INT... 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 SW837_LARGE_INT... 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CSNK1G2 p.A383S 19 1979970 1979970 SW837_LARGE_INT... 37 Missense_Mutation SNP G T uc002lul.3 CSNK1G2_uc010ds... Hybrid_Cap... view
CUBN p.V1731L 10 16990495 16990495 SW837_LARGE_INT... 37 Missense_Mutation SNP C G uc001ioo.2 Hybrid_Cap... view
DNAH8 p.L3817F 6 38913335 38913335 SW837_LARGE_INT... 37 Missense_Mutation SNP C T uc003ooe.1 DNAH8_uc003oog.... Hybrid_Cap... view
EDN1 6 12296190 12296190 SW837_LARGE_INT... 37 Intron SNP A T uc003nae.3 EDN1_uc003nad.2... Hybrid_Cap... view
EP300 22 41574970 41574972 SW837_LARGE_INT... 37 3'UTR Del GTA - rs76489032 uc003azl.3 Hybrid_Cap...
EPHA5 p.V373A 4 66356379 66356379 SW837_LARGE_INT... 37 Missense_Mutation SNP A G uc011cah.1 EPHA5_uc003hcx.... Hybrid_Cap... view
EPHA6 3 97367230 97367231 SW837_LARGE_INT... 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
EPHB6 7 142568771 142568771 SW837_LARGE_INT... 37 3'UTR Del C - uc011kst.1 EPHB6_uc011ksu.... Hybrid_Cap...
FAM123B p.R497* X 63411678 63411678 SW837_LARGE_INT... 37 Nonsense_Mutation SNP G A uc004dvo.2 Hybrid_Cap... view
FBXW7 p.L403fs 4 153250851 153250852 SW837_LARGE_INT... 37 Frame_Shift_Ins Ins - A uc003ims.2 FBXW7_uc011cii.... Hybrid_Cap...
FER p.Q526L 5 108294969 108294969 SW837_LARGE_INT... 37 Missense_Mutation SNP A T rs34269985 uc003kop.1 FER_uc011cvf.1_... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 SW837_LARGE_INT... 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 SW837_LARGE_INT... 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 SW837_LARGE_INT... 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FUS p.P451S 16 31202118 31202118 SW837_LARGE_INT... 37 Missense_Mutation SNP C T uc002ebi.2 FUS_uc002ebf.2_... Hybrid_Cap... view
GPR112 p.P2073T X 135432082 135432082 SW837_LARGE_INT... 37 Missense_Mutation SNP C A uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 SW837_LARGE_INT... 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 SW837_LARGE_INT... 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GRIN2B p.D1380E 12 13716032 13716032 SW837_LARGE_INT... 37 Missense_Mutation SNP G T uc001rbt.2 Hybrid_Cap... view
GUCY2C 12 14827464 14827466 SW837_LARGE_INT... 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HECW1 p.T861M 7 43495977 43495977 SW837_LARGE_INT... 37 Missense_Mutation SNP C T uc003tid.1 HECW1_uc011kbi.... Hybrid_Cap... view
HNF1A 12 121434630 121434631 SW837_LARGE_INT... 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HSP90B1 p.E791del 12 104341188 104341190 SW837_LARGE_INT... 37 In_Frame_Del Del GAA - rs117491163 uc001tkb.1 HSP90B1_uc010sw... Hybrid_Cap...
HSP90B1 12 104341645 104341648 SW837_LARGE_INT... 37 3'UTR Del ACTG - rs2307842 uc001tkb.1 HSP90B1_uc010sw... Hybrid_Cap...
ILK 11 6630029 6630029 SW837_LARGE_INT... 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITGB4 17 73753657 73753657 SW837_LARGE_INT... 37 3'UTR SNP G A uc002jpg.2 ITGB4_uc002jph.... Hybrid_Cap... view
KDR 4 55946014 55946014 SW837_LARGE_INT... 37 3'UTR SNP C T uc003has.2 KDR_uc003hat.1_... Hybrid_Cap... view
KLK7 19 51480672 51480675 SW837_LARGE_INT... 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
KRAS p.G12C 12 25398285 25398285 SW837_LARGE_INT... 37 Missense_Mutation SNP C A uc001rgp.1 KRAS_uc001rgq.1... Hybrid_Cap... view
LETM2 8 38265796 38265798 SW837_LARGE_INT... 37 3'UTR Del ACT - uc003xlm.1 LETM2_uc003xll.... Hybrid_Cap...
MAF 16 79628325 79628325 SW837_LARGE_INT... 37 3'UTR Del A - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 SW837_LARGE_INT... 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 SW837_LARGE_INT... 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 SW837_LARGE_INT... 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP4K1 p.S108C 19 39105076 39105076 SW837_LARGE_INT... 37 Missense_Mutation SNP G C uc002oix.1 MAP4K1_uc002oiy... Hybrid_Cap... view
MAPK10 4 86938375 86938375 SW837_LARGE_INT... 37 3'UTR SNP G A uc003hpq.2 MAPK10_uc010ikg... Hybrid_Cap... view
MLKL p.D369fs 16 74709591 74709594 SW837_LARGE_INT... 37 Frame_Shift_Del Del TCTG - uc002fdb.2 MLKL_uc002fdc.2... Hybrid_Cap...
MSH3 p.PPA66del 5 79950742 79950750 SW837_LARGE_INT... 37 In_Frame_Del Del CCCCC... - rs60484572;rs1047489 uc003kgz.2 DHFR_uc011ctl.1... Hybrid_Cap...
MTMR11 1 149900985 149900986 SW837_LARGE_INT... 37 3'UTR Ins - A rs114426061 uc001etl.3 SF3B4_uc001etj.... Hybrid_Cap...
MYC p.V92I 8 128750737 128750737 SW837_LARGE_INT... 37 Missense_Mutation SNP G A uc003ysi.2 MYC_uc003ysh.1_... Hybrid_Cap... view
MYLK 3 123332875 123332876 SW837_LARGE_INT... 37 3'UTR Ins - T rs35930843;rs115544676 uc003ego.2 MYLK_uc003egl.2... Hybrid_Cap...
NCAM1 11 112832307 112832308 SW837_LARGE_INT... 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 SW837_LARGE_INT... 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.QQQ1272del 20 46279815 46279823 SW837_LARGE_INT... 37 In_Frame_Del Del GCAGC... - uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 SW837_LARGE_INT... 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NFATC1 18 77287653 77287654 SW837_LARGE_INT... 37 3'UTR Del AA - uc010xfg.1 NFATC1_uc002lnd... Hybrid_Cap...
NFIA 1 61921185 61921186 SW837_LARGE_INT... 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NOTCH4 p.12_16LLLLL>L 6 32191659 32191670 SW837_LARGE_INT... 37 In_Frame_Del Del AGCAG... - uc003obb.2 NOTCH4_uc011dpu... Hybrid_Cap...
NPR1 1 153665919 153665920 SW837_LARGE_INT... 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NPRL2 3 50387534 50387534 SW837_LARGE_INT... 37 Intron SNP C T uc003daj.1 NPRL2_uc003dai.... Hybrid_Cap... view
NR1H2 p.176_177insQ 19 50881822 50881823 SW837_LARGE_INT... 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NR4A3 9 102595871 102595871 SW837_LARGE_INT... 37 Intron SNP G A uc004bai.2 NR4A3_uc004bae.... Hybrid_Cap... view
PCDH15 p.G702_splice 10 55839090 55839090 SW837_LARGE_INT... 37 Splice_Site_SNP SNP C A uc010qhy.1 PCDH15_uc010qhq... Hybrid_Cap... view
PDE4DIP p.Q1665fs 1 144873963 144873963 SW837_LARGE_INT... 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.V486fs 1 144917828 144917828 SW837_LARGE_INT... 37 Frame_Shift_Del Del A - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 SW837_LARGE_INT... 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 SW837_LARGE_INT... 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RPGRIP1 p.S1266F 14 21819311 21819311 SW837_LARGE_INT... 37 Missense_Mutation SNP C T uc001wag.2 RPGRIP1_uc001wa... Hybrid_Cap... view
RPS6KA5 14 91360733 91360734 SW837_LARGE_INT... 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
SPEN p.V1920I 1 16258493 16258493 SW837_LARGE_INT... 37 Missense_Mutation SNP G A uc001axk.1 SPEN_uc010obp.1... Hybrid_Cap... view
STK31 7 23872024 23872025 SW837_LARGE_INT... 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TESK1 p.L128V 9 35606274 35606274 SW837_LARGE_INT... 37 Missense_Mutation SNP C G uc003zxa.2 TESK1_uc003zwz.... Hybrid_Cap... view
THBS3 p.G355D 1 155172086 155172086 SW837_LARGE_INT... 37 Missense_Mutation SNP C T uc001fix.2 RAG1AP1_uc010pe... Hybrid_Cap... view
TIAM1 21 32492681 32492681 SW837_LARGE_INT... 37 3'UTR SNP C T uc002yow.1 TIAM1_uc011adk.... Hybrid_Cap... view
TIE1 p.L570M 1 43778053 43778053 SW837_LARGE_INT... 37 Missense_Mutation SNP T A uc001ciu.2 TIE1_uc010okd.1... Hybrid_Cap... view
TLK1 2 171850178 171850179 SW837_LARGE_INT... 37 3'UTR Ins - AA rs71008739 uc002ugo.2 TLK1_uc002ugn.2... Hybrid_Cap...
TP53 p.R248W 17 7577539 7577539 SW837_LARGE_INT... 37 Missense_Mutation SNP G A uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP63 3 189507518 189507519 SW837_LARGE_INT... 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TPR p.E953K 1 186316510 186316510 SW837_LARGE_INT... 37 Missense_Mutation SNP C T uc001grv.2 Hybrid_Cap... view
TRPM6 p.N1558_splice 9 77376913 77376913 SW837_LARGE_INT... 37 Splice_Site_SNP SNP A T uc004ajl.1 TRPM6_uc004ajk.... Hybrid_Cap... view
TRPS1 p.P637S 8 116616287 116616287 SW837_LARGE_INT... 37 Missense_Mutation SNP G A uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap... view
TRPS1 8 116635872 116635873 SW837_LARGE_INT... 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTN p.V15150I 2 179472263 179472263 SW837_LARGE_INT... 37 Missense_Mutation SNP C T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 SW837_LARGE_INT... 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
XPC p.R192G 3 14208716 14208716 SW837_LARGE_INT... 37 Missense_Mutation SNP T C uc011ave.1 XPC_uc011avf.1_... Hybrid_Cap... view