Annotation Summary for Cell Line: T98G  

Cell line primary name: T98G
Cell line aliases:
Gender: M
Site Primary: central_nervous_system
Histology: glioma
Hist Subtype1: astrocytoma_Grade_IV
Notes:
Source: ATCC
Expression arrays: METIS_p_NCLE_RNA1_Human_U133_Plus_2.0_F06_240980
SNP arrays: LIMPS_p_NCLE_DNA2N_GenomeWideSNP_6_B05_246642
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in T98G

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 T98G_CENTRAL_NE... 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ADAM17 2 9630245 9630245 T98G_CENTRAL_NE... 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 T98G_CENTRAL_NE... 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AIFM3 p.V335M 22 21330800 21330800 T98G_CENTRAL_NE... 37 Missense_Mutation SNP G A uc002ztj.2 AIFM3_uc002ztk.... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 T98G_CENTRAL_NE... 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 T98G_CENTRAL_NE... 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALS2 2 202587706 202587707 T98G_CENTRAL_NE... 37 Intron Ins - A rs3219165 uc002uyo.2 ALS2_uc002uyp.3... Hybrid_Cap...
ALS2 p.V96G 2 202626430 202626430 T98G_CENTRAL_NE... 37 Missense_Mutation SNP A C uc002uyo.2 ALS2_uc002uyp.3... Hybrid_Cap... view
APC p.I2329V 5 112178276 112178276 T98G_CENTRAL_NE... 37 Missense_Mutation SNP A G uc010jby.2 APC_uc011cvt.1_... Hybrid_Cap... view
ARHGEF12 p.L1174W 11 120348224 120348224 T98G_CENTRAL_NE... 37 Missense_Mutation SNP T G uc001pxl.1 ARHGEF12_uc009z... Hybrid_Cap... view
BCL2L1 20 30310046 30310046 T98G_CENTRAL_NE... 37 5'UTR SNP C T uc002wwl.2 BCL2L1_uc002wwk... Hybrid_Cap... view
BCR 22 23631813 23631814 T98G_CENTRAL_NE... 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BCR 22 23632777 23632778 T98G_CENTRAL_NE... 37 Intron Ins - T uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BIRC5 17 76219784 76219785 T98G_CENTRAL_NE... 37 3'UTR Ins - AA uc002jvf.2 BIRC5_uc002jvg.... Hybrid_Cap...
BMP4 14 54416602 54416603 T98G_CENTRAL_NE... 37 3'UTR Del TT - rs76335800 uc001xal.3 BMP4_uc010aoh.2... Hybrid_Cap...
C15ORF2 15 24924488 24924488 T98G_CENTRAL_NE... 37 3'UTR SNP G T uc001ywo.2 Hybrid_Cap... view
CABC1 1 227171585 227171585 T98G_CENTRAL_NE... 37 Intron Del T - uc001hqm.1 CABC1_uc001hqn.... Hybrid_Cap...
CASP4 11 104819546 104819547 T98G_CENTRAL_NE... 37 Intron Ins - AGACACAC rs33910737;rs113139978 uc001pid.1 CASP4_uc001pib.... Hybrid_Cap...
CCNA2 p.R138T 4 122743602 122743602 T98G_CENTRAL_NE... 37 Missense_Mutation SNP C G uc003iec.3 Hybrid_Cap... view
CHL1 p.S951Y 3 433418 433418 T98G_CENTRAL_NE... 37 Missense_Mutation SNP C A uc003bot.2 CHL1_uc003bou.2... Hybrid_Cap... view
CLPTM1 19 45490712 45490712 T98G_CENTRAL_NE... 37 Intron SNP C T uc002pai.2 CLPTM1_uc010ejv... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 T98G_CENTRAL_NE... 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN1 p.P241H 12 41327281 41327281 T98G_CENTRAL_NE... 37 Missense_Mutation SNP C A uc001rmm.1 CNTN1_uc009zjy.... Hybrid_Cap... view
CPNE5 p.G324_splice 6 36716045 36716045 T98G_CENTRAL_NE... 37 Splice_Site_SNP SNP C T uc003omr.1 CPNE5_uc003omp.... Hybrid_Cap... view
CSF1R 5 149433400 149433401 T98G_CENTRAL_NE... 37 3'UTR Ins - C rs66970099;rs78449650 uc003lrl.2 CSF1R_uc011dcd.... Hybrid_Cap...
CTBP2 p.K974fs 10 126678123 126678123 T98G_CENTRAL_NE... 37 Frame_Shift_Del Del T - uc001lie.3 CTBP2_uc009yak.... Hybrid_Cap...
DACH1 13 72014625 72014626 T98G_CENTRAL_NE... 37 3'UTR Ins - T rs117109529 uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
DAPK2 p.L236R 15 64218245 64218245 T98G_CENTRAL_NE... 37 Missense_Mutation SNP A C uc002amr.2 DAPK2_uc010uim.... Hybrid_Cap... view
DLL1 p.P224S 6 170597327 170597327 T98G_CENTRAL_NE... 37 Missense_Mutation SNP G A uc003qxm.2 DLL1_uc011ehc.1... Hybrid_Cap... view
DTX1 12 113495959 113495959 T98G_CENTRAL_NE... 37 5'UTR SNP G T uc001tuk.1 Hybrid_Cap... view
EDN1 6 12290729 12290729 T98G_CENTRAL_NE... 37 5'UTR Del A - uc003nae.3 EDN1_uc010jpb.2... Hybrid_Cap...
ELL p.A130A 19 18576301 18576301 T98G_CENTRAL_NE... 37 Silent SNP C T uc002njh.2 ELL_uc010ebq.2_... Hybrid_Cap... view
ETV1 7 14028708 14028708 T98G_CENTRAL_NE... 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR3 4 1809128 1809129 T98G_CENTRAL_NE... 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 T98G_CENTRAL_NE... 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLNB p.R470W 3 58087992 58087992 T98G_CENTRAL_NE... 37 Missense_Mutation SNP C T uc010hne.2 FLNB_uc003djj.2... Hybrid_Cap... view
FLT4 p.A405T 5 180053156 180053156 T98G_CENTRAL_NE... 37 Missense_Mutation SNP C T uc003mlz.3 FLT4_uc003mma.3... Hybrid_Cap... view
FMN2 p.PPLPGAGIPPP939del 1 240370914 240370946 T98G_CENTRAL_NE... 37 In_Frame_Del Del GCCCC... - rs4997328;rs4997329 uc010pye.1 FMN2_uc010pyd.1... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 T98G_CENTRAL_NE... 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 T98G_CENTRAL_NE... 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 T98G_CENTRAL_NE... 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HEPH p.E1060Q X 65480074 65480074 T98G_CENTRAL_NE... 37 Missense_Mutation SNP G C uc011moz.1 HEPH_uc004dwn.2... Hybrid_Cap... view
HNF1A 12 121434630 121434631 T98G_CENTRAL_NE... 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HSP90B1 p.E791del 12 104341188 104341190 T98G_CENTRAL_NE... 37 In_Frame_Del Del GAA - rs117491163 uc001tkb.1 HSP90B1_uc010sw... Hybrid_Cap...
ICK 6 52880757 52880757 T98G_CENTRAL_NE... 37 Intron SNP C T uc003pbh.2 ICK_uc003pbi.2_... Hybrid_Cap... view
ILK 11 6630029 6630029 T98G_CENTRAL_NE... 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ING1 p.N55K 13 111367955 111367955 T98G_CENTRAL_NE... 37 Missense_Mutation SNP C A uc001vri.2 CARS2_uc010tjm.... Hybrid_Cap... view
ITGB1 10 33197131 33197134 T98G_CENTRAL_NE... 37 Intron Del CTTT - rs116966876 uc001iwq.3 ITGB1_uc001iwp.... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 T98G_CENTRAL_NE... 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KALRN p.R1095Q 3 124160883 124160883 T98G_CENTRAL_NE... 37 Missense_Mutation SNP G A uc003ehg.2 KALRN_uc010hrv.... Hybrid_Cap... view
KDM5A p.K1168R 12 417047 417047 T98G_CENTRAL_NE... 37 Missense_Mutation SNP T C uc001qif.1 KDM5A_uc001qie.... Hybrid_Cap... view
KLK7 19 51480672 51480675 T98G_CENTRAL_NE... 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LRP1B p.N3164S 2 141232841 141232841 T98G_CENTRAL_NE... 37 Missense_Mutation SNP T C uc002tvj.1 Hybrid_Cap... view
MAF 16 79628537 79628537 T98G_CENTRAL_NE... 37 Intron Del T - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAML2 p.604_607QQQQ>Q 11 95825375 95825383 T98G_CENTRAL_NE... 37 In_Frame_Del Del TGCTG... - rs113349418 uc001pfw.1 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 T98G_CENTRAL_NE... 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.D1170Y 5 56178535 56178535 T98G_CENTRAL_NE... 37 Missense_Mutation SNP G T uc003jqw.3 Hybrid_Cap... view
MAP3K14 p.R218_splice 17 43364293 43364294 T98G_CENTRAL_NE... 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP4K3 p.F333_splice 2 39536662 39536662 T98G_CENTRAL_NE... 37 Splice_Site_SNP SNP T A uc002rro.2 MAP4K3_uc002rrp... Hybrid_Cap... view
MAPKAPK3 3 50685575 50685575 T98G_CENTRAL_NE... 37 3'UTR Del A - rs76026164 uc003day.1 MAPKAPK3_uc003d... Hybrid_Cap...
MAPKBP1 15 42111753 42111754 T98G_CENTRAL_NE... 37 Intron Ins - C rs3034891 uc001zok.3 MAPKBP1_uc001zo... Hybrid_Cap...
MCM3APAS 21 47671275 47671276 T98G_CENTRAL_NE... 37 3'UTR Ins - AAT rs67797185 uc002zin.2 MCM3APAS_uc002z... Hybrid_Cap...
MLL3 p.G892E 7 151932996 151932996 T98G_CENTRAL_NE... 37 Missense_Mutation SNP C T uc003wla.2 MLL3_uc003wkz.2... Hybrid_Cap... view
MSH3 p.PPA66del 5 79950742 79950750 T98G_CENTRAL_NE... 37 In_Frame_Del Del CCCCC... - rs60484572;rs1047489 uc003kgz.2 DHFR_uc011ctl.1... Hybrid_Cap...
MSI2 17 55709272 55709272 T98G_CENTRAL_NE... 37 Intron SNP C G uc002iuz.1 MSI2_uc010wnm.1... Hybrid_Cap... view
MYO18B p.L919I 22 26222435 26222435 T98G_CENTRAL_NE... 37 Missense_Mutation SNP C A uc003abz.1 MYO18B_uc003aca... Hybrid_Cap... view
NCAM1 11 112832307 112832308 T98G_CENTRAL_NE... 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 T98G_CENTRAL_NE... 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA1 p.N1332S 2 24980955 24980955 T98G_CENTRAL_NE... 37 Missense_Mutation SNP A G uc002rfk.2 NCOA1_uc010eye.... Hybrid_Cap... view
NEK3 p.K313_splice 13 52718050 52718051 T98G_CENTRAL_NE... 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 T98G_CENTRAL_NE... 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
PAX3 2 223158653 223158653 T98G_CENTRAL_NE... 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAXIP1 7 154735785 154735785 T98G_CENTRAL_NE... 37 3'UTR SNP C T uc003wlp.2 LOC100132707_uc... Hybrid_Cap... view
PDK4 7 95221928 95221928 T98G_CENTRAL_NE... 37 Intron Del A - uc003uoa.2 PDK4_uc003unz.2... Hybrid_Cap...
PGGT1B 5 114548071 114548072 T98G_CENTRAL_NE... 37 3'UTR Ins - C uc003kqw.3 PGGT1B_uc003kqx... Hybrid_Cap...
PGR 11 100933598 100933599 T98G_CENTRAL_NE... 37 Intron Ins - AATGA rs35148438 uc001pgh.2 PGR_uc001pgg.2_... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 T98G_CENTRAL_NE... 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIK3R1 5 67584512 67584513 T98G_CENTRAL_NE... 37 Intron Ins - T uc003jva.2 PIK3R1_uc003jvb... Hybrid_Cap...
PMS1 2 190670539 190670540 T98G_CENTRAL_NE... 37 Intron Ins - A rs3214425 uc002urh.3 PMS1_uc010zga.1... Hybrid_Cap...
PRKCI p.R55Q 3 169953080 169953080 T98G_CENTRAL_NE... 37 Missense_Mutation SNP G A uc003fgs.2 Hybrid_Cap... view
PRKD2 19 47200599 47200599 T98G_CENTRAL_NE... 37 Intron SNP G C uc010xye.1 PRKD2_uc002pfe.... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 T98G_CENTRAL_NE... 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PTEN p.L42R 10 89653827 89653827 T98G_CENTRAL_NE... 37 Missense_Mutation SNP T G uc001kfb.2 Hybrid_Cap... view
PTPRC p.P563H 1 198691579 198691579 T98G_CENTRAL_NE... 37 Missense_Mutation SNP C A uc001gur.1 PTPRC_uc001gus.... Hybrid_Cap... view
RCBTB2 p.A272T 13 49084892 49084892 T98G_CENTRAL_NE... 37 Missense_Mutation SNP C T uc010tgg.1 RCBTB2_uc001vch... Hybrid_Cap... view
RECQL4 p.R766fs 8 145738768 145738768 T98G_CENTRAL_NE... 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RIPK2 8 90770141 90770141 T98G_CENTRAL_NE... 37 5'UTR SNP G T uc003yee.2 RIPK2_uc003yef.... Hybrid_Cap... view
RPS6KA5 14 91360733 91360734 T98G_CENTRAL_NE... 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
RPS6KL1 14 75373626 75373627 T98G_CENTRAL_NE... 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
SFRS3 p.R159S 6 36569748 36569748 T98G_CENTRAL_NE... 37 Missense_Mutation SNP G T uc003omj.2 SFRS3_uc003omk.... Hybrid_Cap... view
SS18 p.A4G 18 23670523 23670523 T98G_CENTRAL_NE... 37 Missense_Mutation SNP G C uc002kvm.2 SS18_uc002kvn.2... Hybrid_Cap... view
TCF12 p.E207* 15 57523389 57523389 T98G_CENTRAL_NE... 37 Nonsense_Mutation SNP G T uc002aea.2 TCF12_uc010ugm.... Hybrid_Cap... view
TLR3 p.P99L 4 186998069 186998069 T98G_CENTRAL_NE... 37 Missense_Mutation SNP C T uc003iyq.2 Hybrid_Cap... view
TMEM123 11 102269398 102269398 T98G_CENTRAL_NE... 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TNNI3K 1 75009717 75009717 T98G_CENTRAL_NE... 37 3'UTR SNP C T uc001dge.1 TNNI3K_uc001dgf... Hybrid_Cap... view
TP53 p.M237I 17 7577570 7577570 T98G_CENTRAL_NE... 37 Missense_Mutation SNP C T uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TRIM33 1 114940215 114940216 T98G_CENTRAL_NE... 37 3'UTR Ins - G rs68133208 uc001eew.2 TRIM33_uc010owr... Hybrid_Cap...
TRPS1 8 116635872 116635873 T98G_CENTRAL_NE... 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
VEGFC p.S419_splice 4 177605082 177605084 T98G_CENTRAL_NE... 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
VRK2 p.N211S 2 58350324 58350324 T98G_CENTRAL_NE... 37 Missense_Mutation SNP A G rs36081172 uc002rzo.2 VRK2_uc010fcb.2... Hybrid_Cap... view
YSK4 p.K247K 2 135745701 135745701 T98G_CENTRAL_NE... 37 Silent SNP C T uc002tue.1 YSK4_uc002tuf.1... Hybrid_Cap... view