Annotation Summary for Cell Line: TE-10  

Cell line primary name: TE-10
Cell line aliases:
Gender:
Site Primary: oesophagus
Histology: carcinoma
Hist Subtype1: squamous_cell_carcinoma
Notes:
Source: RIKEN
Expression arrays: BITTS_p_NCLE_RNA12_HG-U133_Plus_2_A05_698772
SNP arrays: QUAFF_p_NCLE_DNAAffy12_GenomeWideSNP_6_E03_592738
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in TE-10

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM28 8 24211994 24211997 TE10_OESOPHAGUS 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADCK1 14 78390632 78390637 TE10_OESOPHAGUS 37 Intron Del AAACT... - rs78274857;rs74969652 uc001xui.2 ADCK1_uc010tvo.... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 TE10_OESOPHAGUS 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP6 14 33201982 33201983 TE10_OESOPHAGUS 37 Intron Ins - T rs71868172 uc001wrq.2 AKAP6_uc010aml.... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 TE10_OESOPHAGUS 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALPK1 4 113347609 113347610 TE10_OESOPHAGUS 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ARHGEF10 8 1817655 1817656 TE10_OESOPHAGUS 37 Intron Ins - T rs57862449 uc003wpr.2 ARHGEF10_uc003w... Hybrid_Cap...
ATRX p.T172I X 76944390 76944390 TE10_OESOPHAGUS 37 Missense_Mutation SNP G A uc004ecp.3 ATRX_uc004ecq.3... Hybrid_Cap... view
AURKC 19 57742494 57742507 TE10_OESOPHAGUS 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BIRC6 p.T2365M 2 32703728 32703728 TE10_OESOPHAGUS 37 Missense_Mutation SNP C T uc010ezu.2 Hybrid_Cap... view
BRDT p.S411C 1 92445247 92445247 TE10_OESOPHAGUS 37 Missense_Mutation SNP C G uc010osz.1 BRDT_uc001dok.3... Hybrid_Cap... view
C15ORF2 p.A776S 15 24923340 24923340 TE10_OESOPHAGUS 37 Missense_Mutation SNP G T uc001ywo.2 Hybrid_Cap... view
CACNB2 10 18828721 18828722 TE10_OESOPHAGUS 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CHRNA5 15 78885615 78885616 TE10_OESOPHAGUS 37 3'UTR Ins - TA rs72534078 uc002bdy.2 CHRNA3_uc002bea... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 TE10_OESOPHAGUS 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CLTCL1 22 19196673 19196674 TE10_OESOPHAGUS 37 Intron Ins - A uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNBP p.H166P 3 128889333 128889333 TE10_OESOPHAGUS 37 Missense_Mutation SNP T G uc003elq.3 CNBP_uc003elr.3... Hybrid_Cap... view
CREB3L2 p.R299Q 7 137590467 137590467 TE10_OESOPHAGUS 37 Missense_Mutation SNP C T uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap... view
CREB3L2 p.T100del 7 137612914 137612916 TE10_OESOPHAGUS 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CREBBP p.Y1539C 16 3786149 3786149 TE10_OESOPHAGUS 37 Missense_Mutation SNP T C uc002cvv.2 CREBBP_uc002cvw... Hybrid_Cap... view
CTBP2 p.K974fs 10 126678123 126678123 TE10_OESOPHAGUS 37 Frame_Shift_Del Del T - uc001lie.3 CTBP2_uc009yak.... Hybrid_Cap...
CYLD 16 50820672 50820673 TE10_OESOPHAGUS 37 Intron Ins - A rs117241863 uc002egp.1 CYLD_uc002ego.2... Hybrid_Cap...
DAPK1 p.R47M 9 90219946 90219946 TE10_OESOPHAGUS 37 Missense_Mutation SNP G T uc004apc.2 DAPK1_uc004ape.... Hybrid_Cap... view
EIF4A2 3 186507258 186507259 TE10_OESOPHAGUS 37 3'UTR Ins - A uc003fqu.2 EIF4A2_uc003fqs... Hybrid_Cap...
EIF4G1 p.L1263F 3 184045478 184045478 TE10_OESOPHAGUS 37 Missense_Mutation SNP C T uc010hxx.2 EIF4G1_uc003fnp... Hybrid_Cap... view
EP300 p.W1509C 22 41568577 41568577 TE10_OESOPHAGUS 37 Missense_Mutation SNP G T uc003azl.3 Hybrid_Cap... view
EPHA6 3 97367230 97367231 TE10_OESOPHAGUS 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
EPHA6 3 97467654 97467654 TE10_OESOPHAGUS 37 3'UTR SNP C T uc010how.1 Hybrid_Cap... view
EPHA7 p.E56* 6 94120885 94120885 TE10_OESOPHAGUS 37 Nonsense_Mutation SNP C A uc003poe.2 EPHA7_uc003pof.... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 TE10_OESOPHAGUS 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FMN2 p.PPLPGAGIPPP939del 1 240370914 240370946 TE10_OESOPHAGUS 37 In_Frame_Del Del GCCCC... - rs4997328;rs4997329 uc010pye.1 FMN2_uc010pyd.1... Hybrid_Cap...
FN1 p.G1146A 2 216262483 216262483 TE10_OESOPHAGUS 37 Missense_Mutation SNP C G uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap... view
FOXP1 3 71008341 71008342 TE10_OESOPHAGUS 37 3'UTR Ins - T rs11433724;rs114233617 uc003dol.2 FOXP1_uc003dom.... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 TE10_OESOPHAGUS 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 TE10_OESOPHAGUS 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 TE10_OESOPHAGUS 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HNF1A 12 121434630 121434631 TE10_OESOPHAGUS 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
ILK 11 6630029 6630029 TE10_OESOPHAGUS 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
INHBA 7 41729128 41729128 TE10_OESOPHAGUS 37 3'UTR SNP T G uc003thq.2 INHBA_uc003thr.... Hybrid_Cap... view
INSRR p.V1010M 1 156812894 156812894 TE10_OESOPHAGUS 37 Missense_Mutation SNP C T uc010pht.1 NTRK1_uc001fqf.... Hybrid_Cap... view
IRS1 p.R986W 2 227660499 227660499 TE10_OESOPHAGUS 37 Missense_Mutation SNP G A uc002voh.3 Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 TE10_OESOPHAGUS 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480672 51480675 TE10_OESOPHAGUS 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LTK p.R569H 15 41797720 41797720 TE10_OESOPHAGUS 37 Missense_Mutation SNP C T uc001zoa.3 LTK_uc001zob.3_... Hybrid_Cap... view
MAP2K1 15 66679649 66679650 TE10_OESOPHAGUS 37 5'UTR Ins - C rs67229745 uc010bhq.2 Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 TE10_OESOPHAGUS 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 TE10_OESOPHAGUS 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MCM3APAS 21 47671383 47671383 TE10_OESOPHAGUS 37 3'UTR SNP T A uc002zin.2 MCM3APAS_uc002z... Hybrid_Cap... view
MCM4 p.R422W 8 48882447 48882447 TE10_OESOPHAGUS 37 Missense_Mutation SNP C T rs78091557 uc003xqk.1 MCM4_uc003xql.1... Hybrid_Cap... view
MECOM p.M825V 3 168833187 168833187 TE10_OESOPHAGUS 37 Missense_Mutation SNP T C uc011bpj.1 MECOM_uc010hwk.... Hybrid_Cap... view
MECOM 3 169381200 169381201 TE10_OESOPHAGUS 37 5'UTR Ins - T uc011bpj.1 MECOM_uc011bpk.... Hybrid_Cap...
MYLK 3 123332875 123332876 TE10_OESOPHAGUS 37 3'UTR Ins - TT rs35930843;rs115544676 uc003ego.2 MYLK_uc003egl.2... Hybrid_Cap...
MYST4 p.E1104del 10 76781906 76781908 TE10_OESOPHAGUS 37 In_Frame_Del Del GAA - rs79644703 uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap...
NCAM1 11 112832307 112832308 TE10_OESOPHAGUS 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 TE10_OESOPHAGUS 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA1 p.I481T 2 24929781 24929781 TE10_OESOPHAGUS 37 Missense_Mutation SNP T C uc002rfk.2 NCOA1_uc010eye.... Hybrid_Cap... view
NEK8 p.S549fs 17 27067918 27067919 TE10_OESOPHAGUS 37 Frame_Shift_Ins Ins - TTCA uc002hcp.2 Hybrid_Cap...
NPR1 1 153665919 153665920 TE10_OESOPHAGUS 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NPR2 p.D445N 9 35800820 35800820 TE10_OESOPHAGUS 37 Missense_Mutation SNP G A uc003zyd.2 NPR2_uc010mlb.2... Hybrid_Cap... view
NR1H2 p.176_177insQ 19 50881822 50881823 TE10_OESOPHAGUS 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NUAK1 p.E324D 12 106461594 106461594 TE10_OESOPHAGUS 37 Missense_Mutation SNP C A uc001tlj.1 Hybrid_Cap... view
NUP153 p.L165V 6 17675843 17675843 TE10_OESOPHAGUS 37 Missense_Mutation SNP G C uc011dje.1 NUP153_uc003ncd... Hybrid_Cap... view
NUP210 p.D432G 3 13417140 13417140 TE10_OESOPHAGUS 37 Missense_Mutation SNP T C uc003bxv.1 NUP210_uc003bxx... Hybrid_Cap... view
OBSCN p.V1930M 1 228462377 228462377 TE10_OESOPHAGUS 37 Missense_Mutation SNP G A uc009xez.1 OBSCN_uc001hsn.... Hybrid_Cap... view
PAX3 2 223066017 223066018 TE10_OESOPHAGUS 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX3 2 223158653 223158653 TE10_OESOPHAGUS 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDE4DIP p.L601fs 1 144915624 144915624 TE10_OESOPHAGUS 37 Frame_Shift_Del Del G - rs1778112 uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.E243fs 1 144923729 144923729 TE10_OESOPHAGUS 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDK4 7 95221928 95221928 TE10_OESOPHAGUS 37 Intron Del A - uc003uoa.2 PDK4_uc003unz.2... Hybrid_Cap...
PIK3C2A 11 17111198 17111199 TE10_OESOPHAGUS 37 3'UTR Del GT - uc001mmq.3 PIK3C2A_uc009yg... Hybrid_Cap...
PINK1 p.V482M 1 20975680 20975680 TE10_OESOPHAGUS 37 Missense_Mutation SNP G A uc001bdm.2 PINK1_uc001bdn.... Hybrid_Cap... view
PPP3R1 p.S13* 2 68444229 68444229 TE10_OESOPHAGUS 37 Nonsense_Mutation SNP G C uc002sei.1 Hybrid_Cap... view
PRDM16 p.C157C 1 3301748 3301748 TE10_OESOPHAGUS 37 Silent SNP C T uc001akf.2 PRDM16_uc001akc... Hybrid_Cap... view
PREX2 8 69143713 69143714 TE10_OESOPHAGUS 37 3'UTR Del TT - uc003xxv.1 Hybrid_Cap...
PRKAR1B p.A67V 7 720341 720341 TE10_OESOPHAGUS 37 Missense_Mutation SNP G A uc003siu.1 PRKAR1B_uc003si... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 TE10_OESOPHAGUS 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RASA1 p.S158C 5 86564741 86564741 TE10_OESOPHAGUS 37 Missense_Mutation SNP C G uc003kiw.2 RASA1_uc010jav.... Hybrid_Cap... view
RECQL4 p.R766fs 8 145738768 145738768 TE10_OESOPHAGUS 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RPTOR 17 78519274 78519275 TE10_OESOPHAGUS 37 5'UTR Del TT - uc002jyt.1 RPTOR_uc002jys.... Hybrid_Cap...
SPTAN1 p.V377M 9 131340432 131340432 TE10_OESOPHAGUS 37 Missense_Mutation SNP G A uc004bvm.3 SPTAN1_uc011mbg... Hybrid_Cap... view
TG p.C1356Y 8 133923686 133923686 TE10_OESOPHAGUS 37 Missense_Mutation SNP G A uc003ytw.2 TG_uc010mdw.2_M... Hybrid_Cap... view
TIE1 p.I401V 1 43775071 43775071 TE10_OESOPHAGUS 37 Missense_Mutation SNP A G uc001ciu.2 TIE1_uc010okd.1... Hybrid_Cap... view
TLK1 2 171850178 171850179 TE10_OESOPHAGUS 37 3'UTR Ins - AA rs71008739 uc002ugo.2 TLK1_uc002ugn.2... Hybrid_Cap...
TLN1 p.A2218V 9 35700195 35700195 TE10_OESOPHAGUS 37 Missense_Mutation SNP G A uc003zxt.2 Hybrid_Cap... view
TP53 p.C242Y 17 7577556 7577556 TE10_OESOPHAGUS 37 Missense_Mutation SNP C T uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TRIM28 p.P814L 19 59061853 59061853 TE10_OESOPHAGUS 37 Missense_Mutation SNP C T uc002qtg.1 TRIM28_uc010eut... Hybrid_Cap... view
TRPS1 8 116635872 116635873 TE10_OESOPHAGUS 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTN 2 179391639 179391640 TE10_OESOPHAGUS 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TTN p.T28268P 2 179413847 179413847 TE10_OESOPHAGUS 37 Missense_Mutation SNP T G uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.I1247M 2 179644178 179644178 TE10_OESOPHAGUS 37 Missense_Mutation SNP A C uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
UBE3B 12 109947357 109947358 TE10_OESOPHAGUS 37 Intron Ins - T uc001top.2 UBE3B_uc001toq.... Hybrid_Cap...
VEGFC p.S419_splice 4 177605082 177605084 TE10_OESOPHAGUS 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
VRK3 p.SCSPQKT127del 19 50510972 50510992 TE10_OESOPHAGUS 37 In_Frame_Del Del CTGGT... - rs117711287;rs117077533 uc002prg.2 VRK3_uc002prh.1... Hybrid_Cap...
WRN p.R13W 8 30916000 30916000 TE10_OESOPHAGUS 37 Missense_Mutation SNP C T uc003xio.3 Hybrid_Cap... view
ZBTB16 p.R49Q 11 113934168 113934168 TE10_OESOPHAGUS 37 Missense_Mutation SNP G A uc001pop.2 ZBTB16_uc001poo... Hybrid_Cap... view