Annotation Summary for Cell Line: TE-11  

Cell line primary name: TE-11
Cell line aliases:
Gender:
Site Primary: oesophagus
Histology: carcinoma
Hist Subtype1: squamous_cell_carcinoma
Notes:
Source: RIKEN
Expression arrays: NIECE_p_NCLE_RNA3_HG-U133_Plus_2_C09_296054
SNP arrays: HONEY_p_NCLE_DNAAffy3_S_GenomeWideSNP_6_F07_293412
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in TE-11

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 TE11_OESOPHAGUS 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ADAM28 p.G502D 8 24193092 24193092 TE11_OESOPHAGUS 37 Missense_Mutation SNP G A uc003xdy.2 ADAM28_uc003xdx... Hybrid_Cap... view
ADAM28 8 24211994 24211997 TE11_OESOPHAGUS 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 TE11_OESOPHAGUS 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 TE11_OESOPHAGUS 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALPK1 4 113347609 113347610 TE11_OESOPHAGUS 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ATM p.L944V 11 108139328 108139328 TE11_OESOPHAGUS 37 Missense_Mutation SNP C G uc001pkb.1 ATM_uc009yxr.1_... Hybrid_Cap... view
AURKC 19 57742494 57742507 TE11_OESOPHAGUS 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BAI3 p.Q457H 6 69666547 69666547 TE11_OESOPHAGUS 37 Missense_Mutation SNP A T uc003pev.3 BAI3_uc010kak.2... Hybrid_Cap... view
BCR 22 23632777 23632778 TE11_OESOPHAGUS 37 Intron Ins - T uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
CACNB2 10 18828721 18828722 TE11_OESOPHAGUS 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CARD10 p.R756W 22 37891804 37891804 TE11_OESOPHAGUS 37 Missense_Mutation SNP G A uc003asx.1 CARD10_uc003ast... Hybrid_Cap... view
CDC42BPB p.I494V 14 103442048 103442048 TE11_OESOPHAGUS 37 Missense_Mutation SNP T C uc001ymi.1 Hybrid_Cap... view
CDK11B 1 1654066 1654068 TE11_OESOPHAGUS 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CHD1 p.P1684del 5 98192165 98192167 TE11_OESOPHAGUS 37 In_Frame_Del Del AGG - rs79267787;rs61749618 uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 TE11_OESOPHAGUS 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN5 p.L1000S 11 100211906 100211906 TE11_OESOPHAGUS 37 Missense_Mutation SNP T C uc001pga.2 CNTN5_uc001pgb.... Hybrid_Cap... view
CNTN6 p.S278A 3 1363404 1363404 TE11_OESOPHAGUS 37 Missense_Mutation SNP T G uc003boz.2 CNTN6_uc011asj.... Hybrid_Cap... view
CREB3L2 p.T100del 7 137612914 137612916 TE11_OESOPHAGUS 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CTNNA2 p.S793I 2 80835391 80835391 TE11_OESOPHAGUS 37 Missense_Mutation SNP G T uc010ysh.1 CTNNA2_uc010yse... Hybrid_Cap... view
CTNNA2 p.S809P 2 80835438 80835438 TE11_OESOPHAGUS 37 Missense_Mutation SNP T C uc010ysh.1 CTNNA2_uc010yse... Hybrid_Cap... view
CYLD 16 50820950 50820950 TE11_OESOPHAGUS 37 Intron SNP G A uc002egp.1 CYLD_uc010cbs.1... Hybrid_Cap... view
DACH1 13 72014625 72014626 TE11_OESOPHAGUS 37 3'UTR Ins - T rs117109529 uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
EIF2AK3 2 88857223 88857223 TE11_OESOPHAGUS 37 3'UTR SNP C G uc002stc.3 Hybrid_Cap... view
EPHA6 3 97367230 97367231 TE11_OESOPHAGUS 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
FBXW7 p.V672L 4 153244143 153244143 TE11_OESOPHAGUS 37 Missense_Mutation SNP C G uc003ims.2 FBXW7_uc011cii.... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 TE11_OESOPHAGUS 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLI1 11 128638217 128638217 TE11_OESOPHAGUS 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLNC p.G947fs 7 128483879 128483880 TE11_OESOPHAGUS 37 Frame_Shift_Ins Ins - G uc003vnz.3 FLNC_uc003voa.3... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 TE11_OESOPHAGUS 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 TE11_OESOPHAGUS 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
HDAC6 X 48661251 48661251 TE11_OESOPHAGUS 37 Intron SNP A T uc011mmi.1 HDAC6_uc004dkr.... Hybrid_Cap... view
HIF1A 14 62213929 62213930 TE11_OESOPHAGUS 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HNF1A 12 121434630 121434631 TE11_OESOPHAGUS 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HSP90B1 p.E791del 12 104341188 104341190 TE11_OESOPHAGUS 37 In_Frame_Del Del GAA - rs117491163 uc001tkb.1 HSP90B1_uc010sw... Hybrid_Cap...
ILK 11 6630029 6630029 TE11_OESOPHAGUS 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 TE11_OESOPHAGUS 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KALRN p.E1326D 3 124181433 124181433 TE11_OESOPHAGUS 37 Missense_Mutation SNP G T rs2289838 uc003ehg.2 KALRN_uc010hrv.... Hybrid_Cap... view
KLK7 19 51480672 51480675 TE11_OESOPHAGUS 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LAMA1 p.G1572D 18 6997832 6997832 TE11_OESOPHAGUS 37 Missense_Mutation SNP C T uc002knm.2 LAMA1_uc010wzj.... Hybrid_Cap... view
LATS2 13 21620222 21620223 TE11_OESOPHAGUS 37 5'UTR Ins - A rs61240127;rs115723063 uc009zzs.2 LATS2_uc001unr.... Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 TE11_OESOPHAGUS 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K7 6 91246267 91246268 TE11_OESOPHAGUS 37 Intron Ins - A rs114677180 uc003pnz.1 MAP3K7_uc003pny... Hybrid_Cap...
MAPKAPK3 3 50685575 50685575 TE11_OESOPHAGUS 37 3'UTR Del A - rs76026164 uc003day.1 MAPKAPK3_uc003d... Hybrid_Cap...
MARK1 p.G377D 1 220808725 220808725 TE11_OESOPHAGUS 37 Missense_Mutation SNP G A uc009xdw.2 MARK1_uc001hmn.... Hybrid_Cap... view
MPPED2 p.E147G 11 30516939 30516939 TE11_OESOPHAGUS 37 Missense_Mutation SNP T C uc001msr.2 MPPED2_uc001msq... Hybrid_Cap... view
MYH10 p.M1035T 17 8411982 8411982 TE11_OESOPHAGUS 37 Missense_Mutation SNP A G uc002glm.2 MYH10_uc002gll.... Hybrid_Cap... view
MYST4 p.A114T 10 76602955 76602955 TE11_OESOPHAGUS 37 Missense_Mutation SNP G A uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap... view
NCAM1 11 112832307 112832308 TE11_OESOPHAGUS 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 TE11_OESOPHAGUS 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NFIA p.Y435C 1 61869869 61869869 TE11_OESOPHAGUS 37 Missense_Mutation SNP A G uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap... view
NFIA 1 61921185 61921186 TE11_OESOPHAGUS 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NFKBIA 14 35871136 35871138 TE11_OESOPHAGUS 37 3'UTR Del TTC - rs112369437 uc001wtf.3 NFKBIA_uc001wte... Hybrid_Cap...
NOTCH1 p.V276L 9 139413934 139413934 TE11_OESOPHAGUS 37 Missense_Mutation SNP C G uc004chz.2 Hybrid_Cap... view
NOTCH4 p.15_16LL>L 6 32191659 32191661 TE11_OESOPHAGUS 37 In_Frame_Del Del AGC - uc003obb.2 NOTCH4_uc011dpu... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 TE11_OESOPHAGUS 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NUP133 p.S1085N 1 229580741 229580741 TE11_OESOPHAGUS 37 Missense_Mutation SNP C T uc001htn.2 Hybrid_Cap... view
OXSR1 3 38294475 38294475 TE11_OESOPHAGUS 37 3'UTR SNP C G uc003chy.2 OXSR1_uc010hhb.... Hybrid_Cap... view
PAX3 2 223066017 223066018 TE11_OESOPHAGUS 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDE4DIP p.E243fs 1 144923729 144923729 TE11_OESOPHAGUS 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 TE11_OESOPHAGUS 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIP5K1B p.A334V 9 71534412 71534412 TE11_OESOPHAGUS 37 Missense_Mutation SNP C T uc004agu.2 PIP5K1B_uc011lr... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 TE11_OESOPHAGUS 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RAPGEF2 p.Y1215C 4 160274674 160274674 TE11_OESOPHAGUS 37 Missense_Mutation SNP A G uc003iqg.3 Hybrid_Cap... view
RGL1 p.S581T 1 183881290 183881290 TE11_OESOPHAGUS 37 Missense_Mutation SNP G C uc001gqm.2 RGL1_uc010pof.1... Hybrid_Cap... view
RPS6KB1 17 58024224 58024225 TE11_OESOPHAGUS 37 3'UTR Ins - AA rs67846207 uc002ixy.2 RPS6KB1_uc010dd... Hybrid_Cap...
SCRIB p.A465V 8 144892866 144892866 TE11_OESOPHAGUS 37 Missense_Mutation SNP G A uc003yzo.1 SCRIB_uc003yzp.... Hybrid_Cap... view
SHC1 1 154937919 154937919 TE11_OESOPHAGUS 37 Intron SNP G A uc001ffw.2 SHC1_uc001ffu.2... Hybrid_Cap... view
SNX19 p.H333Y 11 130784838 130784838 TE11_OESOPHAGUS 37 Missense_Mutation SNP G A uc001qgk.3 SNX19_uc010sce.... Hybrid_Cap... view
STAC2 p.R337W 17 37369370 37369370 TE11_OESOPHAGUS 37 Missense_Mutation SNP G A uc002hrs.2 STAC2_uc010cvt.... Hybrid_Cap... view
STK31 7 23872024 23872025 TE11_OESOPHAGUS 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
STK39 p.Q402R 2 168931626 168931626 TE11_OESOPHAGUS 37 Missense_Mutation SNP T C uc002uea.2 Hybrid_Cap... view
TEC 4 48139307 48139310 TE11_OESOPHAGUS 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TGFB2 1 218519928 218519929 TE11_OESOPHAGUS 37 5'UTR Ins - AAAC uc001hln.2 TGFB2_uc001hll.... Hybrid_Cap...
TLK1 2 171850178 171850179 TE11_OESOPHAGUS 37 3'UTR Ins - AA rs71008739 uc002ugo.2 TLK1_uc002ugn.2... Hybrid_Cap...
TLX3 p.D246G 5 170738464 170738464 TE11_OESOPHAGUS 37 Missense_Mutation SNP A G uc003mbf.2 Hybrid_Cap... view
TMEM123 11 102269398 102269398 TE11_OESOPHAGUS 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TP63 3 189507518 189507519 TE11_OESOPHAGUS 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TRIM42 p.A346E 3 140401999 140401999 TE11_OESOPHAGUS 37 Missense_Mutation SNP C A rs35484200 uc003eto.1 Hybrid_Cap... view
TRPS1 8 116635872 116635873 TE11_OESOPHAGUS 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTN 2 179391639 179391640 TE11_OESOPHAGUS 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
VEGFC p.S419_splice 4 177605082 177605084 TE11_OESOPHAGUS 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
XPC p.G200V 3 14208691 14208691 TE11_OESOPHAGUS 37 Missense_Mutation SNP C A uc011ave.1 XPC_uc011avf.1_... Hybrid_Cap... view
ZFYVE9 1 52812194 52812194 TE11_OESOPHAGUS 37 3'UTR SNP C T uc001cto.2 ZFYVE9_uc001ctp... Hybrid_Cap... view