Annotation Summary for Cell Line: TE-1  

Cell line primary name: TE-1
Cell line aliases:
Gender: M
Site Primary: oesophagus
Histology: carcinoma
Hist Subtype1: squamous_cell_carcinoma
Notes:
Source: RIKEN
Expression arrays: NIECE_p_NCLE_RNA3_HG-U133_Plus_2_C12_296060
SNP arrays: HONEY_p_NCLE_DNAAffy3_S_GenomeWideSNP_6_C04_293334
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in TE-1

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM28 8 24211994 24211997 TE1_OESOPHAGUS 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 TE1_OESOPHAGUS 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ARHGAP29 1 94667477 94667477 TE1_OESOPHAGUS 37 Intron SNP T C uc001dqj.3 ARHGAP29_uc009w... Hybrid_Cap... view
AURKC 19 57742531 57742532 TE1_OESOPHAGUS 37 5'UTR Ins - C uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BLK p.G82W 8 11405609 11405609 TE1_OESOPHAGUS 37 Missense_Mutation SNP G T uc003wty.2 BLK_uc003wtz.2_... Hybrid_Cap... view
BRCA1 p.L52F 17 41258531 41258531 TE1_OESOPHAGUS 37 Missense_Mutation SNP G A rs80357084 uc002ict.2 BRCA1_uc010whp.... Hybrid_Cap... view
CABC1 1 227171585 227171585 TE1_OESOPHAGUS 37 Intron Del T - uc001hqm.1 CABC1_uc001hqn.... Hybrid_Cap...
CACNB2 10 18828721 18828722 TE1_OESOPHAGUS 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CDC42BPB p.E847K 14 103432657 103432657 TE1_OESOPHAGUS 37 Missense_Mutation SNP C T uc001ymi.1 CDC42BPB_uc001y... Hybrid_Cap... view
CDC73 1 193219882 193219882 TE1_OESOPHAGUS 37 3'UTR SNP C G uc001gtb.2 Hybrid_Cap... view
CDK11B 1 1654066 1654068 TE1_OESOPHAGUS 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CHD5 p.W192* 1 6214889 6214889 TE1_OESOPHAGUS 37 Nonsense_Mutation SNP C T uc001amb.1 Hybrid_Cap... view
CHRNA5 15 78885615 78885616 TE1_OESOPHAGUS 37 3'UTR Ins - TA rs72534078 uc002bdy.2 CHRNA3_uc002bea... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 TE1_OESOPHAGUS 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CPNE5 p.V236M 6 36742769 36742769 TE1_OESOPHAGUS 37 Missense_Mutation SNP C T uc003omr.1 CPNE5_uc003oms.... Hybrid_Cap... view
CREB3L2 p.T100del 7 137612914 137612916 TE1_OESOPHAGUS 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CREBBP p.N1789fs 16 3779680 3779681 TE1_OESOPHAGUS 37 Frame_Shift_Ins Ins - GTTGC uc002cvv.2 CREBBP_uc002cvw... Hybrid_Cap...
CRTC1 p.P229S 19 18870373 18870373 TE1_OESOPHAGUS 37 Missense_Mutation SNP C T uc010ebv.2 CRTC1_uc002nkb.... Hybrid_Cap... view
DACH1 13 72014625 72014626 TE1_OESOPHAGUS 37 3'UTR Ins - T rs117109529 uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
DDR2 1 162750211 162750212 TE1_OESOPHAGUS 37 3'UTR Del TT - uc001gcf.2 DDR2_uc001gcg.2... Hybrid_Cap...
DVL1 p.R258R 1 1275553 1275553 TE1_OESOPHAGUS 37 Silent SNP T C uc001aer.3 DVL1_uc002quu.2... Hybrid_Cap... view
EML4 p.T579K 2 42530338 42530338 TE1_OESOPHAGUS 37 Missense_Mutation SNP C A uc002rsi.2 EML4_uc010fap.2... Hybrid_Cap... view
EPHA10 p.S686* 1 38187421 38187421 TE1_OESOPHAGUS 37 Nonsense_Mutation SNP G T uc009vvi.2 EPHA10_uc001cbt... Hybrid_Cap... view
EPHA8 1 22928298 22928298 TE1_OESOPHAGUS 37 3'UTR SNP C A uc001bfx.1 Hybrid_Cap... view
ERN1 p.H963R 17 62121394 62121394 TE1_OESOPHAGUS 37 Missense_Mutation SNP T C uc002jdz.2 Hybrid_Cap... view
ETV1 7 14028708 14028708 TE1_OESOPHAGUS 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 TE1_OESOPHAGUS 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 TE1_OESOPHAGUS 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 TE1_OESOPHAGUS 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLI1 p.R257W 11 128677122 128677122 TE1_OESOPHAGUS 37 Missense_Mutation SNP C T uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap... view
FLNB p.D1264E 3 58110126 58110126 TE1_OESOPHAGUS 37 Missense_Mutation SNP C A uc010hne.2 FLNB_uc003djj.2... Hybrid_Cap... view
FN1 2 216244182 216244185 TE1_OESOPHAGUS 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GNAS 20 57473929 57473930 TE1_OESOPHAGUS 37 Intron Del TG - uc002xzw.2 GNAS_uc002xzt.2... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 TE1_OESOPHAGUS 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GPR141 p.F105L 7 37780310 37780310 TE1_OESOPHAGUS 37 Missense_Mutation SNP C A uc003tfm.1 Hybrid_Cap... view
GRIA3 X 122318386 122318387 TE1_OESOPHAGUS 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GRIN2B p.R328T 12 13906278 13906278 TE1_OESOPHAGUS 37 Missense_Mutation SNP C G uc001rbt.2 Hybrid_Cap... view
GUCY2C 12 14827464 14827466 TE1_OESOPHAGUS 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HECW1 p.E935Q 7 43506057 43506057 TE1_OESOPHAGUS 37 Missense_Mutation SNP G C uc003tid.1 HECW1_uc011kbi.... Hybrid_Cap... view
HIF1A 14 62213929 62213930 TE1_OESOPHAGUS 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HIP1 7 75368256 75368256 TE1_OESOPHAGUS 37 5'UTR SNP A C uc003uds.1 Hybrid_Cap... view
HNF1A 12 121434630 121434631 TE1_OESOPHAGUS 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
IGF1R 15 99192755 99192763 TE1_OESOPHAGUS 37 5'UTR Del TTTTT... - uc002bul.2 IGF1R_uc010urq.... Hybrid_Cap...
ILK 11 6630029 6630029 TE1_OESOPHAGUS 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ILK 11 6631935 6631935 TE1_OESOPHAGUS 37 3'UTR SNP C T uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap... view
ISG15 1 948846 948847 TE1_OESOPHAGUS 37 5'UTR Ins - A rs33916361 uc001acj.3 Hybrid_Cap...
ITGB1 10 33197131 33197134 TE1_OESOPHAGUS 37 Intron Del CTTT - rs116966876 uc001iwq.3 ITGB1_uc001iwp.... Hybrid_Cap...
ITGB4 p.G1020R 17 73739889 73739889 TE1_OESOPHAGUS 37 Missense_Mutation SNP G A uc002jpg.2 ITGB4_uc002jph.... Hybrid_Cap... view
ITGB4 p.R1599C 17 73752596 73752596 TE1_OESOPHAGUS 37 Missense_Mutation SNP C T uc002jpg.2 ITGB4_uc002jph.... Hybrid_Cap... view
ITPR2 p.R470_splice 12 26834804 26834805 TE1_OESOPHAGUS 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KDSR 18 60998964 60998964 TE1_OESOPHAGUS 37 3'UTR SNP G A uc010dpw.2 KDSR_uc010xem.1... Hybrid_Cap... view
KIAA1409 p.K2028R 14 94121728 94121728 TE1_OESOPHAGUS 37 Missense_Mutation SNP A G rs2296687 uc001ybv.1 KIAA1409_uc001y... Hybrid_Cap... view
KLK7 19 51480672 51480675 TE1_OESOPHAGUS 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LATS2 13 21620222 21620223 TE1_OESOPHAGUS 37 5'UTR Ins - A rs61240127;rs115723063 uc009zzs.2 LATS2_uc001unr.... Hybrid_Cap...
LMNA p.S636fs 1 156108487 156108487 TE1_OESOPHAGUS 37 Frame_Shift_Del Del G - uc001fni.2 LMNA_uc001fnf.1... Hybrid_Cap...
LRP1B p.H3205Y 2 141232719 141232719 TE1_OESOPHAGUS 37 Missense_Mutation SNP G A uc002tvj.1 Hybrid_Cap... view
LTBR 12 6500202 6500203 TE1_OESOPHAGUS 37 3'UTR Ins - G rs3203555 uc001qny.1 LTBR_uc010sfc.1... Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 TE1_OESOPHAGUS 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP2K1 15 66679649 66679650 TE1_OESOPHAGUS 37 5'UTR Ins - C rs67229745 uc010bhq.2 Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 TE1_OESOPHAGUS 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 TE1_OESOPHAGUS 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP4K5 14 50915570 50915570 TE1_OESOPHAGUS 37 Intron SNP T C uc001wya.2 MAP4K5_uc001wyb... Hybrid_Cap... view
MAPKBP1 15 42111753 42111754 TE1_OESOPHAGUS 37 Intron Ins - C rs3034891 uc001zok.3 MAPKBP1_uc001zo... Hybrid_Cap...
MARK1 p.Q441L 1 220809220 220809220 TE1_OESOPHAGUS 37 Missense_Mutation SNP A T uc009xdw.2 MARK1_uc001hmn.... Hybrid_Cap... view
MLL3 p.I3096V 7 151871304 151871304 TE1_OESOPHAGUS 37 Missense_Mutation SNP T C uc003wla.2 MLL3_uc003wkz.2... Hybrid_Cap... view
MYLK p.E1066del 3 123419117 123419119 TE1_OESOPHAGUS 37 In_Frame_Del Del TTC - rs72491150 uc003ego.2 MYLK_uc011bjw.1... Hybrid_Cap...
MYST4 p.E1104del 10 76781906 76781908 TE1_OESOPHAGUS 37 In_Frame_Del Del GAA - rs79644703 uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap...
NCAM1 11 112832307 112832308 TE1_OESOPHAGUS 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 TE1_OESOPHAGUS 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.Q1276del 20 46279837 46279839 TE1_OESOPHAGUS 37 In_Frame_Del Del CAG - rs2664555 uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NEK2 1 211848966 211848966 TE1_OESOPHAGUS 37 5'UTR SNP C T uc001hir.1 NEK2_uc001hiq.1... Hybrid_Cap... view
NEK3 p.K313_splice 13 52718050 52718051 TE1_OESOPHAGUS 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NEK3 13 52730549 52730549 TE1_OESOPHAGUS 37 5'UTR SNP T G uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap... view
NFIA 1 61921185 61921186 TE1_OESOPHAGUS 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NIN p.F273Y 14 51239182 51239182 TE1_OESOPHAGUS 37 Missense_Mutation SNP A T uc001wyi.2 NIN_uc001wyj.2_... Hybrid_Cap... view
NOTCH2 1 120457759 120457759 TE1_OESOPHAGUS 37 3'UTR SNP G A uc001eik.2 Hybrid_Cap... view
NOTCH3 p.D2010fs 19 15272409 15272410 TE1_OESOPHAGUS 37 Frame_Shift_Ins Ins - TC uc002nan.2 Hybrid_Cap...
NPR1 1 153665919 153665920 TE1_OESOPHAGUS 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NPRL2 3 50384978 50384978 TE1_OESOPHAGUS 37 3'UTR Del C - rs75013672 uc003daj.1 ZMYND10_uc003da... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 TE1_OESOPHAGUS 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NR3C1 5 142780419 142780419 TE1_OESOPHAGUS 37 Splice_Site_SNP SNP T A uc003lmy.2 NR3C1_uc003lmz.... Hybrid_Cap... view
NTRK3 15 88522429 88522429 TE1_OESOPHAGUS 37 Intron SNP T C uc002bme.1 NTRK3_uc002bmh.... Hybrid_Cap... view
NUP153 p.S1268N 6 17626230 17626230 TE1_OESOPHAGUS 37 Missense_Mutation SNP C T uc011dje.1 NUP153_uc003ncd... Hybrid_Cap... view
OBSCN p.C937F 1 228412316 228412316 TE1_OESOPHAGUS 37 Missense_Mutation SNP G T uc009xez.1 OBSCN_uc001hsn.... Hybrid_Cap... view
PAK6 p.R21C 15 40557047 40557047 TE1_OESOPHAGUS 37 Missense_Mutation SNP C T uc010bbl.2 PAK6_uc010bbm.2... Hybrid_Cap... view
PAX3 2 223066017 223066018 TE1_OESOPHAGUS 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PCNA p.K13N 20 5100406 5100406 TE1_OESOPHAGUS 37 Missense_Mutation SNP C A uc002wlp.2 PCNA_uc002wlq.2... Hybrid_Cap... view
PDE4DIP p.L601fs 1 144915624 144915624 TE1_OESOPHAGUS 37 Frame_Shift_Del Del G - rs1778112 uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.E243fs 1 144923729 144923729 TE1_OESOPHAGUS 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PGR 11 100933598 100933599 TE1_OESOPHAGUS 37 Intron Ins - AATGA rs35148438 uc001pgh.2 PGR_uc001pgg.2_... Hybrid_Cap...
PIP5K1A p.S186F 1 151205097 151205098 TE1_OESOPHAGUS 37 Missense_Mutation DNP CC TT uc001exj.2 PIP5K1A_uc001ex... Hybrid_Cap...
PLK1 p.S224R 16 23692329 23692329 TE1_OESOPHAGUS 37 Missense_Mutation SNP C A uc002dlz.1 Hybrid_Cap... view
PREX2 p.E570G 8 68992744 68992744 TE1_OESOPHAGUS 37 Missense_Mutation SNP A G uc003xxv.1 PREX2_uc003xxu.... Hybrid_Cap... view
PRKCA 17 64298959 64298960 TE1_OESOPHAGUS 37 5'UTR Ins - G rs71160558 uc002jfp.1 PRKCA_uc002jfo.... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 TE1_OESOPHAGUS 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RANBP9 p.E599_splice 6 13632755 13632755 TE1_OESOPHAGUS 37 Splice_Site_SNP SNP T G uc003nbb.2 RANBP9_uc003nba... Hybrid_Cap... view
RB1 p.R787* 13 49039374 49039374 TE1_OESOPHAGUS 37 Nonsense_Mutation SNP C T uc001vcb.2 Hybrid_Cap... view
RET 10 43623818 43623818 TE1_OESOPHAGUS 37 3'UTR SNP G A uc001jal.2 Hybrid_Cap... view
ROBO2 3 77666937 77666937 TE1_OESOPHAGUS 37 Intron Del A - rs78745603 uc003dpz.2 ROBO2_uc003dpy.... Hybrid_Cap...
RPS6KL1 14 75373626 75373627 TE1_OESOPHAGUS 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
SMG1 p.S1879A 16 18859344 18859344 TE1_OESOPHAGUS 37 Missense_Mutation SNP A C uc002dfm.2 SMG1_uc010bwb.2... Hybrid_Cap... view
SSU72 1 1477324 1477325 TE1_OESOPHAGUS 37 3'UTR Del CA - rs72502747 uc001agd.2 C1orf70_uc009vk... Hybrid_Cap...
TAOK3 12 118588761 118588762 TE1_OESOPHAGUS 37 3'UTR Ins - TTTT rs116872184 uc001twx.2 TAOK3_uc001twv.... Hybrid_Cap...
TESK2 p.R76R 1 45887515 45887515 TE1_OESOPHAGUS 37 Silent SNP G T uc001cns.1 TESK2_uc009vxr.... Hybrid_Cap... view
TMEM123 11 102269398 102269398 TE1_OESOPHAGUS 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TMEM200A p.VI299del 6 130762461 130762466 TE1_OESOPHAGUS 37 In_Frame_Del Del TGTTA... - uc003qca.2 TMEM200A_uc010k... Hybrid_Cap...
TNN p.S833P 1 175087807 175087807 TE1_OESOPHAGUS 37 Missense_Mutation SNP T C uc001gkl.1 Hybrid_Cap... view
TNN p.E1271V 1 175116119 175116119 TE1_OESOPHAGUS 37 Missense_Mutation SNP A T uc001gkl.1 Hybrid_Cap... view
TP53 p.V272M 17 7577124 7577124 TE1_OESOPHAGUS 37 Missense_Mutation SNP C T uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP63 3 189507518 189507519 TE1_OESOPHAGUS 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TRPM6 p.D117N 9 77455135 77455135 TE1_OESOPHAGUS 37 Missense_Mutation SNP C T uc004ajl.1 TRPM6_uc004ajk.... Hybrid_Cap... view
TRPS1 8 116635872 116635873 TE1_OESOPHAGUS 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TSSK2 p.C297* 22 19119803 19119803 TE1_OESOPHAGUS 37 Nonsense_Mutation SNP C A uc002zow.2 DGCR14_uc002zot... Hybrid_Cap... view
TTN 2 179391639 179391640 TE1_OESOPHAGUS 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TTN 2 179610985 179610985 TE1_OESOPHAGUS 37 Intron SNP C T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN 2 179615912 179615912 TE1_OESOPHAGUS 37 Intron SNP T C uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TYK2 p.R106_splice 19 10478880 10478880 TE1_OESOPHAGUS 37 Splice_Site_SNP SNP T C uc002moc.3 TYK2_uc010dxe.2... Hybrid_Cap... view
UNC13C p.D1291H 15 54586145 54586145 TE1_OESOPHAGUS 37 Missense_Mutation SNP G C uc002ack.2 UNC13C_uc002acl... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 TE1_OESOPHAGUS 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
ZNF276 16 89806207 89806207 TE1_OESOPHAGUS 37 3'UTR SNP T C uc002fos.3 ZNF276_uc010ciq... Hybrid_Cap... view
ZNF668 p.G550S 16 31072601 31072601 TE1_OESOPHAGUS 37 Missense_Mutation SNP C T uc010caf.2 ZNF668_uc002eao... Hybrid_Cap... view
ZNF668 p.F140C 16 31075362 31075362 TE1_OESOPHAGUS 37 Missense_Mutation SNP A C uc010caf.2 ZNF668_uc002eao... Hybrid_Cap... view