Annotation Summary for Cell Line: TE-5  

Cell line primary name: TE-5
Cell line aliases:
Gender:
Site Primary: oesophagus
Histology: carcinoma
Hist Subtype1: squamous_cell_carcinoma
Notes:
Source: RIKEN
Expression arrays: NIECE_p_NCLE_RNA3_HG-U133_Plus_2_D08_296076
SNP arrays: HONEY_p_NCLE_DNAAffy3_S_GenomeWideSNP_6_G05_293432
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in TE-5

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM28 8 24211994 24211997 TE5_OESOPHAGUS 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADCK1 14 78390632 78390637 TE5_OESOPHAGUS 37 Intron Del AAACT... - rs78274857;rs74969652 uc001xui.2 ADCK1_uc010tvo.... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 TE5_OESOPHAGUS 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ALK p.P157H 2 30143056 30143056 TE5_OESOPHAGUS 37 Missense_Mutation SNP G T uc002rmy.2 Hybrid_Cap... view
ALPK1 4 113347609 113347610 TE5_OESOPHAGUS 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
APC p.T1292M 5 112175166 112175166 TE5_OESOPHAGUS 37 Missense_Mutation SNP C T uc010jby.2 APC_uc011cvt.1_... Hybrid_Cap... view
ATP11A p.F981S 13 113516840 113516840 TE5_OESOPHAGUS 37 Missense_Mutation SNP T C uc001vsj.3 ATP11A_uc001vsi... Hybrid_Cap... view
CASC5 p.M550T 15 40914033 40914033 TE5_OESOPHAGUS 37 Missense_Mutation SNP T C uc010bbs.1 CASC5_uc010ucq.... Hybrid_Cap... view
CATSPERB p.D124_splice 14 92185760 92185760 TE5_OESOPHAGUS 37 Splice_Site_SNP SNP A G uc001xzs.1 Hybrid_Cap... view
CCDC50 p.I112V 3 191087711 191087711 TE5_OESOPHAGUS 37 Missense_Mutation SNP A G uc003fsv.2 CCDC50_uc003fsw... Hybrid_Cap... view
CDK11B 1 1654066 1654068 TE5_OESOPHAGUS 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CDK14 p.D355N 7 90675233 90675233 TE5_OESOPHAGUS 37 Missense_Mutation SNP G A uc003uky.2 CDK14_uc003ukz.... Hybrid_Cap... view
CDK2 p.R245Q 12 56364973 56364973 TE5_OESOPHAGUS 37 Missense_Mutation SNP G A uc001sit.3 CDK2_uc001siu.3... Hybrid_Cap... view
CDX2 p.R198Q 13 28539101 28539101 TE5_OESOPHAGUS 37 Missense_Mutation SNP C T uc001urv.2 Hybrid_Cap... view
CHD1 5 98192031 98192031 TE5_OESOPHAGUS 37 3'UTR SNP T C uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap... view
CHD1 p.P1684del 5 98192165 98192167 TE5_OESOPHAGUS 37 In_Frame_Del Del AGG - rs79267787;rs61749618 uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap...
CIC p.N702S 19 42795025 42795025 TE5_OESOPHAGUS 37 Missense_Mutation SNP A G uc002otf.1 Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 TE5_OESOPHAGUS 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CYB5R4 p.C213F 6 84630874 84630874 TE5_OESOPHAGUS 37 Missense_Mutation SNP G T uc003pkf.2 Hybrid_Cap... view
DACH1 13 72014625 72014626 TE5_OESOPHAGUS 37 3'UTR Ins - T rs117109529 uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
DDR2 1 162750211 162750212 TE5_OESOPHAGUS 37 3'UTR Del TT - uc001gcf.2 DDR2_uc001gcg.2... Hybrid_Cap...
EDN1 6 12290729 12290729 TE5_OESOPHAGUS 37 5'UTR Del A - uc003nae.3 EDN1_uc010jpb.2... Hybrid_Cap...
EGFR 7 55238357 55238357 TE5_OESOPHAGUS 37 Intron SNP C A uc003tqk.2 EGFR_uc003tqj.2... Hybrid_Cap... view
EP300 p.Q2306E 22 41574631 41574631 TE5_OESOPHAGUS 37 Missense_Mutation SNP C G uc003azl.3 Hybrid_Cap... view
EPHA6 3 97367230 97367231 TE5_OESOPHAGUS 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
EPHA6 p.E940Q 3 97439138 97439138 TE5_OESOPHAGUS 37 Missense_Mutation SNP G C uc010how.1 EPHA6_uc003drt.... Hybrid_Cap... view
ERCC3 p.S128S 2 128050273 128050273 TE5_OESOPHAGUS 37 Silent SNP G A uc002toh.1 ERCC3_uc002toe.... Hybrid_Cap... view
ETV1 7 14028708 14028708 TE5_OESOPHAGUS 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 TE5_OESOPHAGUS 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR2 10 123239314 123239314 TE5_OESOPHAGUS 37 3'UTR SNP C T uc010qtj.1 FGFR2_uc010qtg.... Hybrid_Cap... view
FLI1 11 128638217 128638217 TE5_OESOPHAGUS 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLNB p.T907M 3 58098020 58098020 TE5_OESOPHAGUS 37 Missense_Mutation SNP C T uc010hne.2 FLNB_uc003djj.2... Hybrid_Cap... view
FLNB p.D1264E 3 58110126 58110126 TE5_OESOPHAGUS 37 Missense_Mutation SNP C A uc010hne.2 FLNB_uc003djj.2... Hybrid_Cap... view
FMN2 p.PPLPGAGIPPP939del 1 240370914 240370946 TE5_OESOPHAGUS 37 In_Frame_Del Del GCCCC... - rs4997328;rs4997329 uc010pye.1 FMN2_uc010pyd.1... Hybrid_Cap...
FN1 2 216244182 216244185 TE5_OESOPHAGUS 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
FN1 p.G783S 2 216273102 216273102 TE5_OESOPHAGUS 37 Missense_Mutation SNP C T uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap... view
FOXP1 3 71008341 71008342 TE5_OESOPHAGUS 37 3'UTR Ins - T rs11433724;rs114233617 uc003dol.2 FOXP1_uc003dom.... Hybrid_Cap...
GPC3 X 132888207 132888208 TE5_OESOPHAGUS 37 Intron Ins - A uc010nrn.1 GPC3_uc004exd.1... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 TE5_OESOPHAGUS 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 TE5_OESOPHAGUS 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 TE5_OESOPHAGUS 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HDAC6 X 48664704 48664704 TE5_OESOPHAGUS 37 Intron SNP G A uc011mmi.1 HDAC6_uc004dkr.... Hybrid_Cap... view
HDLBP p.K168I 2 242196169 242196169 TE5_OESOPHAGUS 37 Missense_Mutation SNP T A uc002waz.2 HDLBP_uc002wba.... Hybrid_Cap... view
HIF1A 14 62213929 62213930 TE5_OESOPHAGUS 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HNF1A 12 121434630 121434631 TE5_OESOPHAGUS 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
ILK 11 6630029 6630029 TE5_OESOPHAGUS 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
INHBA 7 41729122 41729122 TE5_OESOPHAGUS 37 3'UTR Del T - uc003thq.2 INHBA_uc003thr.... Hybrid_Cap...
INSR p.G1048D 19 7125409 7125409 TE5_OESOPHAGUS 37 Missense_Mutation SNP C T uc002mgd.1 INSR_uc002mge.1... Hybrid_Cap... view
ISG15 p.F41I 1 949481 949481 TE5_OESOPHAGUS 37 Missense_Mutation SNP T A uc001acj.3 Hybrid_Cap... view
ITGB1 10 33197131 33197134 TE5_OESOPHAGUS 37 Intron Del CTTT - rs116966876 uc001iwq.3 ITGB1_uc001iwp.... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 TE5_OESOPHAGUS 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KALRN p.P2255T 3 124390569 124390569 TE5_OESOPHAGUS 37 Missense_Mutation SNP C A uc003ehg.2 KALRN_uc003ehi.... Hybrid_Cap... view
KLK7 19 51480672 51480675 TE5_OESOPHAGUS 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
KSR2 p.L507F 12 117977605 117977605 TE5_OESOPHAGUS 37 Missense_Mutation SNP G A uc001two.2 Hybrid_Cap... view
MAF 16 79628609 79628610 TE5_OESOPHAGUS 37 Intron Ins - A rs36052284 uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAF 16 79628537 79628537 TE5_OESOPHAGUS 37 Intron Del T - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAML2 p.604_607QQQQ>Q 11 95825375 95825383 TE5_OESOPHAGUS 37 In_Frame_Del Del TGCTG... - rs113349418 uc001pfw.1 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 TE5_OESOPHAGUS 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP2K1 15 66679649 66679650 TE5_OESOPHAGUS 37 5'UTR Ins - C rs67229745 uc010bhq.2 Hybrid_Cap...
MAP2K6 17 67516341 67516341 TE5_OESOPHAGUS 37 Intron Del T - uc002jij.2 MAP2K6_uc002jii... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 TE5_OESOPHAGUS 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 TE5_OESOPHAGUS 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K4 p.A1199del 6 161519351 161519353 TE5_OESOPHAGUS 37 In_Frame_Del Del CTG - uc003qtn.2 MAP3K4_uc010kkc... Hybrid_Cap...
MAPK4 p.E117* 18 48190677 48190677 TE5_OESOPHAGUS 37 Nonsense_Mutation SNP G T uc002lev.2 MAPK4_uc010xdm.... Hybrid_Cap... view
MET p.E815D 7 116403130 116403130 TE5_OESOPHAGUS 37 Missense_Mutation SNP G C uc010lkh.2 MET_uc003vij.2_... Hybrid_Cap... view
MGC42105 5 43280845 43280845 TE5_OESOPHAGUS 37 3'UTR SNP G T uc003jno.2 Hybrid_Cap... view
MLL3 p.Y816fs 7 151945071 151945072 TE5_OESOPHAGUS 37 Frame_Shift_Ins Ins - T uc003wla.2 Hybrid_Cap...
MLLT3 9 20346377 20346378 TE5_OESOPHAGUS 37 3'UTR Ins - A rs66943046 uc003zoe.2 MLLT3_uc011lne.... Hybrid_Cap...
MYLK 3 123332876 123332876 TE5_OESOPHAGUS 37 3'UTR Del T - rs115544676 uc003ego.2 MYLK_uc003egl.2... Hybrid_Cap...
MYST4 p.E1104del 10 76781906 76781908 TE5_OESOPHAGUS 37 In_Frame_Del Del GAA - rs79644703 uc001jwn.1 MYST4_uc001jwm.... Hybrid_Cap...
NCAM1 11 112832307 112832308 TE5_OESOPHAGUS 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 TE5_OESOPHAGUS 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 TE5_OESOPHAGUS 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NFIA 1 61921185 61921186 TE5_OESOPHAGUS 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NPM1 5 170837734 170837734 TE5_OESOPHAGUS 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NPR1 1 153665919 153665920 TE5_OESOPHAGUS 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 TE5_OESOPHAGUS 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NTRK3 15 88472356 88472356 TE5_OESOPHAGUS 37 Intron SNP G A uc002bme.1 NTRK3_uc002bmh.... Hybrid_Cap... view
NUDT11 X 51239296 51239309 TE5_OESOPHAGUS 37 Start_Codon_Del Del TCCTC... - uc010njt.2 Hybrid_Cap...
NUP153 p.G745S 6 17637708 17637708 TE5_OESOPHAGUS 37 Missense_Mutation SNP C T uc011dje.1 NUP153_uc003ncd... Hybrid_Cap... view
NYNRIN p.P337L 14 24878010 24878010 TE5_OESOPHAGUS 37 Missense_Mutation SNP C T uc001wpf.3 Hybrid_Cap... view
PATZ1 p.E209V 22 31740963 31740963 TE5_OESOPHAGUS 37 Missense_Mutation SNP T A uc003akq.2 PATZ1_uc003akp.... Hybrid_Cap... view
PAX3 2 223066017 223066018 TE5_OESOPHAGUS 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX3 2 223158653 223158653 TE5_OESOPHAGUS 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDE4DIP p.L601fs 1 144915624 144915624 TE5_OESOPHAGUS 37 Frame_Shift_Del Del G - rs1778112 uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.E243fs 1 144923729 144923729 TE5_OESOPHAGUS 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDGFRA 4 55130162 55130162 TE5_OESOPHAGUS 37 Intron Del T - uc003han.3 PDGFRA_uc003haa... Hybrid_Cap...
PGR 11 100933598 100933599 TE5_OESOPHAGUS 37 Intron Ins - AATGA rs35148438 uc001pgh.2 PGR_uc001pgg.2_... Hybrid_Cap...
PHIP p.Q1001H 6 79679885 79679885 TE5_OESOPHAGUS 37 Missense_Mutation SNP T A uc003pir.2 PHIP_uc003piq.2... Hybrid_Cap... view
PIK3C2A 11 17111198 17111199 TE5_OESOPHAGUS 37 3'UTR Del GT - uc001mmq.3 PIK3C2A_uc009yg... Hybrid_Cap...
PIK3C2A p.I1133V 11 17134138 17134138 TE5_OESOPHAGUS 37 Missense_Mutation SNP T C uc001mmq.3 PIK3C2A_uc009yg... Hybrid_Cap... view
PIK3CA p.E545K 3 178936091 178936091 TE5_OESOPHAGUS 37 Missense_Mutation SNP G A rs104886003 uc003fjk.2 Hybrid_Cap... view
PIK3CA 3 178952185 178952185 TE5_OESOPHAGUS 37 3'UTR SNP G A uc003fjk.2 Hybrid_Cap... view
PRKCA 17 64298959 64298960 TE5_OESOPHAGUS 37 5'UTR Ins - G rs71160558 uc002jfp.1 PRKCA_uc002jfo.... Hybrid_Cap...
PRKCZ 1 2116549 2116549 TE5_OESOPHAGUS 37 3'UTR SNP C T uc001aiq.2 PRKCZ_uc001air.... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 TE5_OESOPHAGUS 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PRPF4B p.L355S 6 4032815 4032815 TE5_OESOPHAGUS 37 Missense_Mutation SNP T C uc003mvv.2 PRPF4B_uc011dhv... Hybrid_Cap... view
RAD51 15 40990955 40990956 TE5_OESOPHAGUS 37 5'UTR Ins - A rs55714242 uc010bbx.2 RAD51_uc001zmi.... Hybrid_Cap...
RANBP17 5 170338180 170338180 TE5_OESOPHAGUS 37 Intron SNP C A uc003mba.2 RANBP17_uc003ma... Hybrid_Cap... view
RANBP17 5 170338369 170338369 TE5_OESOPHAGUS 37 Intron SNP A T uc003mba.2 RANBP17_uc003ma... Hybrid_Cap... view
RBPJ p.R238* 4 26426291 26426291 TE5_OESOPHAGUS 37 Nonsense_Mutation SNP C T rs5007634 uc003grx.1 RBPJ_uc003gry.1... Hybrid_Cap... view
RECQL4 p.R766fs 8 145738768 145738768 TE5_OESOPHAGUS 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RPS6KA5 14 91360733 91360734 TE5_OESOPHAGUS 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
RPS6KB1 17 58024224 58024225 TE5_OESOPHAGUS 37 3'UTR Ins - AA rs67846207 uc002ixy.2 RPS6KB1_uc010dd... Hybrid_Cap...
RPS6KL1 14 75373626 75373627 TE5_OESOPHAGUS 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
SACS p.P1418R 13 23913762 23913762 TE5_OESOPHAGUS 37 Missense_Mutation SNP G C uc001uon.2 SACS_uc001uoo.2... Hybrid_Cap... view
STK31 7 23872024 23872025 TE5_OESOPHAGUS 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TAOK3 p.E794Q 12 118590187 118590187 TE5_OESOPHAGUS 37 Missense_Mutation SNP C G uc001twx.2 TAOK3_uc001twv.... Hybrid_Cap... view
TEC 4 48139307 48139310 TE5_OESOPHAGUS 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TGFB2 1 218519928 218519929 TE5_OESOPHAGUS 37 5'UTR Ins - AAAC uc001hln.2 TGFB2_uc001hll.... Hybrid_Cap...
TIAM1 p.R1578H 21 32492729 32492729 TE5_OESOPHAGUS 37 Missense_Mutation SNP C T uc002yow.1 TIAM1_uc011adk.... Hybrid_Cap... view
TMEM123 11 102269398 102269398 TE5_OESOPHAGUS 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TP53 p.V272L 17 7577124 7577124 TE5_OESOPHAGUS 37 Missense_Mutation SNP C A uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP63 3 189507518 189507519 TE5_OESOPHAGUS 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TPM3 1 154140302 154140302 TE5_OESOPHAGUS 37 3'UTR SNP G A uc001fec.1 TPM3_uc001fdx.1... Hybrid_Cap... view
TRIP11 p.I1747V 14 92454649 92454649 TE5_OESOPHAGUS 37 Missense_Mutation SNP T C uc001xzy.2 TRIP11_uc010auf... Hybrid_Cap... view
TTN 2 179391639 179391640 TE5_OESOPHAGUS 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TTN p.K10043N 2 179543190 179543190 TE5_OESOPHAGUS 37 Missense_Mutation SNP C G uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
UBR5 p.L2526F 8 103277351 103277351 TE5_OESOPHAGUS 37 Missense_Mutation SNP C A uc003ykr.1 UBR5_uc003yks.1... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 TE5_OESOPHAGUS 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
ZNF331 p.M1I 19 54072633 54072633 TE5_OESOPHAGUS 37 Missense_Mutation SNP G A uc002qbx.1 ZNF331_uc002qby... Hybrid_Cap... view