Annotation Summary for Cell Line: TE-6  

Cell line primary name: TE-6
Cell line aliases:
Gender:
Site Primary: oesophagus
Histology: carcinoma
Hist Subtype1: squamous_cell_carcinoma
Notes:
Source: RIKEN
Expression arrays: BITTS_p_NCLE_RNA12_HG-U133_Plus_2_B11_698790
SNP arrays: SKATS_p_NCLE_DNAAffy13_GenomeWideSNP_6_E07_592848
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in TE-6

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM22 p.V753L 7 87795171 87795171 TE6_OESOPHAGUS 37 Missense_Mutation SNP G T uc003ujp.1 ADAM22_uc003ujk... Hybrid_Cap... view
ADAM28 8 24211994 24211997 TE6_OESOPHAGUS 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADCK1 14 78390632 78390637 TE6_OESOPHAGUS 37 Intron Del AAACT... - rs78274857;rs74969652 uc001xui.2 ADCK1_uc010tvo.... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 TE6_OESOPHAGUS 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP6 14 33201982 33201983 TE6_OESOPHAGUS 37 Intron Ins - T rs71868172 uc001wrq.2 AKAP6_uc010aml.... Hybrid_Cap...
ALPK1 4 113347609 113347610 TE6_OESOPHAGUS 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 TE6_OESOPHAGUS 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
ALS2 2 202587706 202587707 TE6_OESOPHAGUS 37 Intron Ins - A rs3219165 uc002uyo.2 ALS2_uc002uyp.3... Hybrid_Cap...
AR p.D733N X 66937343 66937343 TE6_OESOPHAGUS 37 Missense_Mutation SNP G A uc004dwu.1 AR_uc004dwv.1_M... Hybrid_Cap... view
ASPH p.A264_splice 8 62550924 62550925 TE6_OESOPHAGUS 37 Splice_Site_Ins Ins - A rs5891816 uc003xuj.2 ASPH_uc011leg.1... Hybrid_Cap...
ATP10A p.L1426V 15 25924712 25924712 TE6_OESOPHAGUS 37 Missense_Mutation SNP G C uc010ayu.2 Hybrid_Cap... view
ATP10A p.R1068* 15 25932939 25932939 TE6_OESOPHAGUS 37 Nonsense_Mutation SNP G A uc010ayu.2 Hybrid_Cap... view
ATRX p.S84L X 76952184 76952184 TE6_OESOPHAGUS 37 Missense_Mutation SNP G A uc004ecp.3 ATRX_uc004ecq.3... Hybrid_Cap... view
AURKC 19 57742494 57742507 TE6_OESOPHAGUS 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
BCL2A1 15 80263468 80263468 TE6_OESOPHAGUS 37 5'UTR SNP C T uc002bfc.3 BCL2A1_uc002bfd... Hybrid_Cap... view
BCL3 19 45262965 45262965 TE6_OESOPHAGUS 37 3'UTR Del C - uc010xxe.1 Hybrid_Cap...
BMP4 14 54416602 54416602 TE6_OESOPHAGUS 37 3'UTR Del T - rs76335800 uc001xal.3 BMP4_uc010aoh.2... Hybrid_Cap...
BTG1 12 92537706 92537707 TE6_OESOPHAGUS 37 3'UTR Ins - T rs33983967 uc001tby.3 BTG1_uc001tbv.1... Hybrid_Cap...
C15ORF2 p.A776S 15 24923340 24923340 TE6_OESOPHAGUS 37 Missense_Mutation SNP G T uc001ywo.2 Hybrid_Cap... view
CACNB2 p.T297I 10 18807843 18807843 TE6_OESOPHAGUS 37 Missense_Mutation SNP C T uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap... view
CACNB2 10 18828721 18828722 TE6_OESOPHAGUS 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CARD11 p.E756K 7 2962271 2962271 TE6_OESOPHAGUS 37 Missense_Mutation SNP C T uc003smv.2 Hybrid_Cap... view
CDC42BPB p.E117_splice 14 103474807 103474807 TE6_OESOPHAGUS 37 Splice_Site_SNP SNP A G uc001ymi.1 Hybrid_Cap... view
CDK11B 1 1654066 1654068 TE6_OESOPHAGUS 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CHD1 p.P1684del 5 98192165 98192167 TE6_OESOPHAGUS 37 In_Frame_Del Del AGG - rs79267787;rs61749618 uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap...
CHD8 14 21853629 21853630 TE6_OESOPHAGUS 37 3'UTR Ins - T rs75170206;rs78520772 uc001was.1 CHD8_uc001war.1... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 TE6_OESOPHAGUS 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CLTCL1 22 19196718 19196718 TE6_OESOPHAGUS 37 Intron SNP C T uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap... view
COL14A1 p.E931D 8 121267519 121267519 TE6_OESOPHAGUS 37 Missense_Mutation SNP A T uc003yox.2 COL14A1_uc003yo... Hybrid_Cap... view
CREB3L2 p.T100del 7 137612914 137612916 TE6_OESOPHAGUS 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CSMD3 p.L3481M 8 113253976 113253976 TE6_OESOPHAGUS 37 Missense_Mutation SNP G T uc003ynu.2 CSMD3_uc003yns.... Hybrid_Cap... view
CSPP1 8 68107911 68107911 TE6_OESOPHAGUS 37 3'UTR Del C - uc003xxi.2 ARFGEF1_uc003xx... Hybrid_Cap...
CYP1B1 p.D218Y 2 38301880 38301880 TE6_OESOPHAGUS 37 Missense_Mutation SNP C A uc002rqo.2 Hybrid_Cap... view
DACH1 13 72014625 72014626 TE6_OESOPHAGUS 37 3'UTR Ins - T rs117109529 uc010thn.1 DACH1_uc010tho.... Hybrid_Cap...
DACH1 p.L388V 13 72147109 72147109 TE6_OESOPHAGUS 37 Missense_Mutation SNP G C uc010thn.1 DACH1_uc010tho.... Hybrid_Cap... view
DUSP6 p.S200T 12 89744605 89744605 TE6_OESOPHAGUS 37 Missense_Mutation SNP A T uc001tay.2 DUSP6_uc001taz.... Hybrid_Cap... view
EDNRB 13 78470935 78470935 TE6_OESOPHAGUS 37 3'UTR SNP A G rs78607960 uc001vkp.1 EDNRB_uc001vkq.... Hybrid_Cap... view
EGF p.S589F 4 110895900 110895900 TE6_OESOPHAGUS 37 Missense_Mutation SNP C T uc003hzy.3 EGF_uc011cfu.1_... Hybrid_Cap... view
EPHA6 p.A675V 3 97198158 97198158 TE6_OESOPHAGUS 37 Missense_Mutation SNP C T uc010how.1 EPHA6_uc011bgo.... Hybrid_Cap... view
EPHA6 3 97367230 97367231 TE6_OESOPHAGUS 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
FAM123B p.G447S X 63411828 63411828 TE6_OESOPHAGUS 37 Missense_Mutation SNP C T uc004dvo.2 Hybrid_Cap... view
FER p.T410A 5 108233541 108233541 TE6_OESOPHAGUS 37 Missense_Mutation SNP A G uc003kop.1 FER_uc011cvf.1_... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 TE6_OESOPHAGUS 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLCN 17 17116883 17116883 TE6_OESOPHAGUS 37 3'UTR SNP G C uc002gra.3 PLD6_uc010cpn.2... Hybrid_Cap... view
FLI1 11 128638217 128638217 TE6_OESOPHAGUS 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FOXP1 3 71008341 71008342 TE6_OESOPHAGUS 37 3'UTR Ins - T rs11433724;rs114233617 uc003dol.2 FOXP1_uc003dom.... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 TE6_OESOPHAGUS 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 TE6_OESOPHAGUS 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 TE6_OESOPHAGUS 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HGF p.A585V 7 81335606 81335606 TE6_OESOPHAGUS 37 Missense_Mutation SNP G A uc003uhl.2 HGF_uc003uhm.2_... Hybrid_Cap... view
HIF1A 14 62213929 62213930 TE6_OESOPHAGUS 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HNF1A p.E41K 12 121416692 121416692 TE6_OESOPHAGUS 37 Missense_Mutation SNP G A uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap... view
HNF1A 12 121434630 121434631 TE6_OESOPHAGUS 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
IL1RAP 3 190366553 190366553 TE6_OESOPHAGUS 37 Intron SNP C T uc003fsq.2 IL1RAP_uc003fsm... Hybrid_Cap... view
ILK 11 6630029 6630029 TE6_OESOPHAGUS 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 TE6_OESOPHAGUS 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KDM5A p.A687T 12 432857 432857 TE6_OESOPHAGUS 37 Missense_Mutation SNP C T uc001qif.1 KDM5A_uc001qie.... Hybrid_Cap... view
KDM5A p.S612L 12 438134 438134 TE6_OESOPHAGUS 37 Missense_Mutation SNP G A uc001qif.1 KDM5A_uc001qie.... Hybrid_Cap... view
KLK7 19 51480672 51480675 TE6_OESOPHAGUS 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LAMA1 18 6955527 6955527 TE6_OESOPHAGUS 37 Intron SNP G A uc002knm.2 LAMA1_uc002knk.... Hybrid_Cap... view
LIMK2 p.S501N 22 31669444 31669444 TE6_OESOPHAGUS 37 Missense_Mutation SNP G A uc003akj.2 LIMK2_uc003akg.... Hybrid_Cap... view
LRRC2 3 46560301 46560301 TE6_OESOPHAGUS 37 3'UTR SNP A G uc010hji.2 LRRC2_uc003cpu.... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 TE6_OESOPHAGUS 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP2K5 p.W340C 15 67995722 67995722 TE6_OESOPHAGUS 37 Missense_Mutation SNP G C uc002aqu.2 MAP2K5_uc002aqv... Hybrid_Cap... view
MAP3K1 p.T949del 5 56177849 56177851 TE6_OESOPHAGUS 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 TE6_OESOPHAGUS 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K4 p.A1296D 6 161527576 161527576 TE6_OESOPHAGUS 37 Missense_Mutation SNP C A uc003qtn.2 MAP3K4_uc010kkc... Hybrid_Cap... view
MAP3K5 6 136878752 136878752 TE6_OESOPHAGUS 37 3'UTR Del T - rs79903899 uc003qhc.2 MAP3K5_uc011edj... Hybrid_Cap...
MAPK14 6 36076345 36076354 TE6_OESOPHAGUS 37 3'UTR Del GTGTG... - rs80147786 uc003olp.2 MAPK14_uc003olq... Hybrid_Cap...
MCF2 p.Q173L X 138711954 138711954 TE6_OESOPHAGUS 37 Missense_Mutation SNP T A uc011mwo.1 MCF2_uc004fau.2... Hybrid_Cap... view
MLL p.G3131S 11 118375998 118375998 TE6_OESOPHAGUS 37 Missense_Mutation SNP G A uc001ptb.2 MLL_uc001pta.2_... Hybrid_Cap... view
MLL3 p.Y816fs 7 151945071 151945072 TE6_OESOPHAGUS 37 Frame_Shift_Ins Ins - T uc003wla.2 Hybrid_Cap...
MLLT10 p.P349L 10 21959628 21959628 TE6_OESOPHAGUS 37 Missense_Mutation SNP C T uc001iqs.2 MLLT10_uc001iqt... Hybrid_Cap... view
MYH10 p.T1407I 17 8396332 8396332 TE6_OESOPHAGUS 37 Missense_Mutation SNP G A uc002glm.2 MYH10_uc002gll.... Hybrid_Cap... view
MYLK p.E1066del 3 123419117 123419119 TE6_OESOPHAGUS 37 In_Frame_Del Del TTC - rs72491150 uc003ego.2 MYLK_uc011bjw.1... Hybrid_Cap...
NCAM1 11 112832340 112832340 TE6_OESOPHAGUS 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NFIA 1 61921198 61921199 TE6_OESOPHAGUS 37 3'UTR Ins - A rs74089375 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NFKBIA 14 35871136 35871138 TE6_OESOPHAGUS 37 3'UTR Del TTC - rs112369437 uc001wtf.3 NFKBIA_uc001wte... Hybrid_Cap...
NPM1 5 170837734 170837734 TE6_OESOPHAGUS 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 TE6_OESOPHAGUS 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
PAX3 2 223066017 223066018 TE6_OESOPHAGUS 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX3 2 223158653 223158653 TE6_OESOPHAGUS 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDE4DIP 1 144863860 144863861 TE6_OESOPHAGUS 37 Intron Ins - T rs33949841 uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PGR 11 100933598 100933599 TE6_OESOPHAGUS 37 Intron Ins - AATGA rs35148438 uc001pgh.2 PGR_uc001pgg.2_... Hybrid_Cap...
PIK3C2A 11 17111198 17111199 TE6_OESOPHAGUS 37 3'UTR Del GT - uc001mmq.3 PIK3C2A_uc009yg... Hybrid_Cap...
PIK3C2G p.L1239F 12 18715763 18715763 TE6_OESOPHAGUS 37 Missense_Mutation SNP G T uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap... view
PLK4 4 128819882 128819882 TE6_OESOPHAGUS 37 3'UTR SNP A G uc003ifo.2 PLK4_uc011cgs.1... Hybrid_Cap... view
PPARGC1A 4 23886343 23886343 TE6_OESOPHAGUS 37 Intron SNP G A uc003gqs.2 PPARGC1A_uc003g... Hybrid_Cap... view
PRKACB 1 84701272 84701272 TE6_OESOPHAGUS 37 3'UTR SNP A G uc001djl.2 PRKACB_uc001djj... Hybrid_Cap... view
PRKCA 17 64298959 64298960 TE6_OESOPHAGUS 37 5'UTR Ins - G rs71160558 uc002jfp.1 PRKCA_uc002jfo.... Hybrid_Cap...
PRKDC p.G2113del 8 48771415 48771417 TE6_OESOPHAGUS 37 In_Frame_Del Del CTC - uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 TE6_OESOPHAGUS 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PTPN22 p.G92_splice 1 114401196 114401196 TE6_OESOPHAGUS 37 Splice_Site_SNP SNP C G uc001eds.2 PTPN22_uc009wgq... Hybrid_Cap... view
RASGRF1 p.V1053I 15 79284055 79284055 TE6_OESOPHAGUS 37 Missense_Mutation SNP C T rs2304997 uc002beq.2 RASGRF1_uc002be... Hybrid_Cap... view
RBPJ 4 26431822 26431822 TE6_OESOPHAGUS 37 Intron Del A - rs76214390 uc003grx.1 RBPJ_uc003gry.1... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 TE6_OESOPHAGUS 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RPS6KB1 17 58024224 58024225 TE6_OESOPHAGUS 37 3'UTR Ins - AA rs67846207 uc002ixy.2 RPS6KB1_uc010dd... Hybrid_Cap...
STK25 2 242435659 242435662 TE6_OESOPHAGUS 37 Intron Del AAGG - rs3215138;rs75497042 uc002wbm.2 STK25_uc002wbk.... Hybrid_Cap...
STK31 p.K668Q 7 23821074 23821074 TE6_OESOPHAGUS 37 Missense_Mutation SNP A C uc003sws.3 STK31_uc003swt.... Hybrid_Cap... view
STK31 7 23872024 23872025 TE6_OESOPHAGUS 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
STRADA 17 61781331 61781332 TE6_OESOPHAGUS 37 Intron Ins - AGAACC rs66701913 uc002jbm.2 STRADA_uc002jbn... Hybrid_Cap...
TAOK1 p.A787V 17 27857636 27857636 TE6_OESOPHAGUS 37 Missense_Mutation SNP C T uc002hdz.1 TAOK1_uc010wbe.... Hybrid_Cap... view
TEC 4 48139307 48139310 TE6_OESOPHAGUS 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TNK1 p.T514K 17 7291773 7291773 TE6_OESOPHAGUS 37 Missense_Mutation SNP C A rs55641092 uc002ggi.3 TNK1_uc002ggj.3... Hybrid_Cap... view
TP53 p.R248Q 17 7577538 7577538 TE6_OESOPHAGUS 37 Missense_Mutation SNP C T rs11540652 uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP63 3 189507518 189507519 TE6_OESOPHAGUS 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TRPS1 8 116635872 116635873 TE6_OESOPHAGUS 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TSSK3 1 32828157 32828160 TE6_OESOPHAGUS 37 5'UTR Del CAGA - uc001bvf.2 Hybrid_Cap...
TTN 2 179391639 179391640 TE6_OESOPHAGUS 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TTN p.T29121K 2 179410992 179410992 TE6_OESOPHAGUS 37 Missense_Mutation SNP G T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.A29042T 2 179411327 179411327 TE6_OESOPHAGUS 37 Missense_Mutation SNP C T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.S13053Y 2 179483415 179483415 TE6_OESOPHAGUS 37 Missense_Mutation SNP G T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.T6223S 2 179587115 179587115 TE6_OESOPHAGUS 37 Missense_Mutation SNP T A uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TWF1 p.R319H 12 44190828 44190828 TE6_OESOPHAGUS 37 Missense_Mutation SNP C T uc001rob.2 TWF1_uc001rnz.2... Hybrid_Cap... view
VDR 12 48238358 48238358 TE6_OESOPHAGUS 37 3'UTR SNP G C uc001rql.2 VDR_uc001rqm.2_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 TE6_OESOPHAGUS 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...