Annotation Summary for Cell Line: TE-8  

Cell line primary name: TE-8
Cell line aliases:
Gender:
Site Primary: oesophagus
Histology: carcinoma
Hist Subtype1: squamous_cell_carcinoma
Notes:
Source: RIKEN
Expression arrays: BITTS_p_NCLE_RNA12_HG-U133_Plus_2_F07_698902
SNP arrays: SKATS_p_NCLE_DNAAffy13_GenomeWideSNP_6_B06_592840
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in TE-8

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 TE8_OESOPHAGUS 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ABCC3 17 48741659 48741659 TE8_OESOPHAGUS 37 Intron SNP G A uc002isl.2 ABCC3_uc002isk.... Hybrid_Cap... view
ADAM28 8 24211994 24211997 TE8_OESOPHAGUS 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AGAP2 p.P826S 12 58123503 58123503 TE8_OESOPHAGUS 37 Missense_Mutation SNP G A uc001spq.2 AGAP2_uc001spp.... Hybrid_Cap... view
AKAP12 p.1531_1532insE 6 151674116 151674117 TE8_OESOPHAGUS 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
ALPK1 p.V738A 4 113352916 113352916 TE8_OESOPHAGUS 37 Missense_Mutation SNP T C uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap... view
ALS2 2 202587706 202587707 TE8_OESOPHAGUS 37 Intron Ins - A rs3219165 uc002uyo.2 ALS2_uc002uyp.3... Hybrid_Cap...
ARHGEF10 p.V1037L 8 1881995 1881995 TE8_OESOPHAGUS 37 Missense_Mutation SNP G C uc003wpr.2 ARHGEF10_uc003w... Hybrid_Cap... view
CACNB2 10 18828721 18828722 TE8_OESOPHAGUS 37 3'UTR Ins - AA rs3841459 uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap...
CDK11B 1 1654066 1654068 TE8_OESOPHAGUS 37 Intron Del GCG - uc001agv.1 CDK11B_uc001aha... Hybrid_Cap...
CDKL2 p.L337P 4 76523271 76523271 TE8_OESOPHAGUS 37 Missense_Mutation SNP A G uc011cbp.1 CDKL2_uc003hiq.... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 TE8_OESOPHAGUS 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CLTCL1 22 19196673 19196674 TE8_OESOPHAGUS 37 Intron Ins - A uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN6 3 1339681 1339686 TE8_OESOPHAGUS 37 Intron Del GTTTT... - uc003boz.2 CNTN6_uc010hbo.... Hybrid_Cap...
CREBBP p.Q1765fs 16 3779755 3779755 TE8_OESOPHAGUS 37 Frame_Shift_Del Del G - uc002cvv.2 CREBBP_uc002cvw... Hybrid_Cap...
CTBP2 p.K974fs 10 126678123 126678123 TE8_OESOPHAGUS 37 Frame_Shift_Del Del T - uc001lie.3 CTBP2_uc009yak.... Hybrid_Cap...
CYP1B1 2 38297654 38297655 TE8_OESOPHAGUS 37 3'UTR Ins - A rs9341258 uc002rqo.2 Hybrid_Cap...
CYP2B6 p.P167A 19 41512824 41512824 TE8_OESOPHAGUS 37 Missense_Mutation SNP C G rs3826711 uc002opr.1 CYP2A7_uc002opo... Hybrid_Cap... view
DGKB 7 14216345 14216346 TE8_OESOPHAGUS 37 Intron Ins - AGACT uc003ssz.2 DGKB_uc011jxt.1... Hybrid_Cap...
DPYD p.T768K 1 97700547 97700547 TE8_OESOPHAGUS 37 Missense_Mutation SNP G T rs56005131 uc001drv.2 Hybrid_Cap... view
DSTYK p.D221E 1 205138952 205138952 TE8_OESOPHAGUS 37 Missense_Mutation SNP G T uc001hbw.2 DSTYK_uc001hbx.... Hybrid_Cap... view
EGFR 7 55224558 55224558 TE8_OESOPHAGUS 37 Intron SNP G T uc003tqk.2 EGFR_uc003tqh.2... Hybrid_Cap... view
EGFR 7 55273591 55273592 TE8_OESOPHAGUS 37 3'UTR Ins - A rs34043207 uc003tqk.2 EGFR_uc011kco.1... Hybrid_Cap...
EIF4G1 p.E472del 3 184039744 184039746 TE8_OESOPHAGUS 37 In_Frame_Del Del GAA - uc010hxx.2 EIF4G1_uc003fno... Hybrid_Cap...
FANCI p.E1131K 15 89849279 89849279 TE8_OESOPHAGUS 37 Missense_Mutation SNP G A uc010bnp.1 FANCI_uc002bnm.... Hybrid_Cap... view
FBN2 p.W1007G 5 127681247 127681247 TE8_OESOPHAGUS 37 Missense_Mutation SNP A C uc003kuu.2 FBN2_uc003kuv.2... Hybrid_Cap... view
FGFR1OP 6 167453519 167453520 TE8_OESOPHAGUS 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FH p.T285A 1 241669354 241669354 TE8_OESOPHAGUS 37 Missense_Mutation SNP T C uc001hyx.2 Hybrid_Cap... view
FLI1 11 128638217 128638217 TE8_OESOPHAGUS 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLT4 5 180035183 180035185 TE8_OESOPHAGUS 37 Intron Del AGT - uc003mlz.3 FLT4_uc003mma.3... Hybrid_Cap...
FN1 2 216244182 216244185 TE8_OESOPHAGUS 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 TE8_OESOPHAGUS 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 TE8_OESOPHAGUS 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 TE8_OESOPHAGUS 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HIF1A 14 62213929 62213930 TE8_OESOPHAGUS 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
ILK 11 6630029 6630029 TE8_OESOPHAGUS 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 TE8_OESOPHAGUS 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480672 51480675 TE8_OESOPHAGUS 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
KSR2 p.V728I 12 117923447 117923447 TE8_OESOPHAGUS 37 Missense_Mutation SNP C T uc001two.2 Hybrid_Cap... view
LTBR 12 6500112 6500112 TE8_OESOPHAGUS 37 3'UTR SNP G A uc001qny.1 LTBR_uc010sfc.1... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 TE8_OESOPHAGUS 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 TE8_OESOPHAGUS 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MET p.N375K 7 116340263 116340263 TE8_OESOPHAGUS 37 Missense_Mutation SNP C G uc010lkh.2 MET_uc003vij.2_... Hybrid_Cap... view
MKL1 p.M479L 22 40815007 40815007 TE8_OESOPHAGUS 37 Missense_Mutation SNP T A uc003ayv.1 MKL1_uc003ayw.1... Hybrid_Cap... view
MLL3 p.D2843Y 7 151874011 151874011 TE8_OESOPHAGUS 37 Missense_Mutation SNP C A uc003wla.2 MLL3_uc003wkz.2... Hybrid_Cap... view
MSH6 2 48034056 48034056 TE8_OESOPHAGUS 37 3'UTR SNP A T uc002rwd.3 MSH6_uc010fbj.2... Hybrid_Cap... view
MYLK p.E1066del 3 123419117 123419119 TE8_OESOPHAGUS 37 In_Frame_Del Del TTC - rs72491150 uc003ego.2 MYLK_uc011bjw.1... Hybrid_Cap...
NCAM1 11 112832307 112832308 TE8_OESOPHAGUS 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 TE8_OESOPHAGUS 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 TE8_OESOPHAGUS 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NEK9 p.R779* 14 75558080 75558080 TE8_OESOPHAGUS 37 Nonsense_Mutation SNP G A uc001xrl.2 NEK9_uc001xrj.2... Hybrid_Cap... view
NFIA 1 61921185 61921186 TE8_OESOPHAGUS 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NOTCH1 p.C440R 9 139412327 139412327 TE8_OESOPHAGUS 37 Missense_Mutation SNP A G uc004chz.2 Hybrid_Cap... view
NPR1 1 153665919 153665920 TE8_OESOPHAGUS 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881822 50881823 TE8_OESOPHAGUS 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
OXSR1 p.R128Q 3 38240303 38240303 TE8_OESOPHAGUS 37 Missense_Mutation SNP G A uc003chy.2 OXSR1_uc010hhb.... Hybrid_Cap... view
PAX3 2 223158653 223158653 TE8_OESOPHAGUS 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDCD11 p.D961N 10 105184858 105184858 TE8_OESOPHAGUS 37 Missense_Mutation SNP G A rs117992169 uc001kwy.1 Hybrid_Cap... view
PDE4DIP 1 144863620 144863620 TE8_OESOPHAGUS 37 Intron SNP A G uc001elw.3 NBPF10_uc009wir... Hybrid_Cap... view
PDGFA 7 538151 538151 TE8_OESOPHAGUS 37 3'UTR SNP T C uc003sir.2 PDGFA_uc003sis.... Hybrid_Cap... view
PDK4 7 95221928 95221928 TE8_OESOPHAGUS 37 Intron Del A - uc003uoa.2 PDK4_uc003unz.2... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 TE8_OESOPHAGUS 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIK3CD p.M707I 1 9781912 9781912 TE8_OESOPHAGUS 37 Missense_Mutation SNP G A uc001aqe.3 PIK3CD_uc001aqb... Hybrid_Cap... view
PMS1 2 190670539 190670540 TE8_OESOPHAGUS 37 Intron Ins - A rs3214425 uc002urh.3 PMS1_uc010zga.1... Hybrid_Cap...
POU5F1 p.N214D 6 31133365 31133365 TE8_OESOPHAGUS 37 Missense_Mutation SNP T C uc003nsv.2 POU5F1_uc003nsu... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 TE8_OESOPHAGUS 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RAG1 p.I810V 11 36597282 36597282 TE8_OESOPHAGUS 37 Missense_Mutation SNP A G rs61752933 uc001mwu.3 RAG1_uc001mwt.2... Hybrid_Cap... view
RAPGEF2 4 160189200 160189201 TE8_OESOPHAGUS 37 5'UTR Ins - T rs72011511 uc003iqg.3 Hybrid_Cap...
RPS6KA5 14 91360733 91360734 TE8_OESOPHAGUS 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
RPS6KL1 14 75373626 75373627 TE8_OESOPHAGUS 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
TG p.R1202C 8 133913768 133913768 TE8_OESOPHAGUS 37 Missense_Mutation SNP C T uc003ytw.2 TG_uc010mdw.2_I... Hybrid_Cap... view
TLK1 2 171850178 171850179 TE8_OESOPHAGUS 37 3'UTR Ins - AA rs71008739 uc002ugo.2 TLK1_uc002ugn.2... Hybrid_Cap...
TNK2 p.C663C 3 195595369 195595369 TE8_OESOPHAGUS 37 Silent SNP G A rs75080776 uc003fvt.1 TNK2_uc003fvq.1... Hybrid_Cap... view
TP53 p.M237I 17 7577570 7577570 TE8_OESOPHAGUS 37 Missense_Mutation SNP C A uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP53 p.Y220C 17 7578190 7578190 TE8_OESOPHAGUS 37 Missense_Mutation SNP T C uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP53BP1 p.R1818Q 15 43701242 43701242 TE8_OESOPHAGUS 37 Missense_Mutation SNP C T uc001zrr.3 TP53BP1_uc010ud... Hybrid_Cap... view
TRPS1 8 116635872 116635873 TE8_OESOPHAGUS 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTBK1 p.E771del 6 43250726 43250728 TE8_OESOPHAGUS 37 In_Frame_Del Del GAA - uc003ouq.1 Hybrid_Cap...
TTBK2 p.Q316L 15 43086875 43086875 TE8_OESOPHAGUS 37 Missense_Mutation SNP T A uc001zqo.2 TTBK2_uc010bcy.... Hybrid_Cap... view
TTN 2 179391639 179391640 TE8_OESOPHAGUS 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TYK2 p.F505I 19 10473096 10473096 TE8_OESOPHAGUS 37 Missense_Mutation SNP A T uc002moc.3 TYK2_uc010dxe.2... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 TE8_OESOPHAGUS 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
ZAK 2 174086283 174086283 TE8_OESOPHAGUS 37 Intron SNP C T uc002uhz.2 ZAK_uc002uhy.2_... Hybrid_Cap... view