Annotation Summary for Cell Line: TE-9  

Cell line primary name: TE-9
Cell line aliases:
Gender: M
Site Primary: oesophagus
Histology: carcinoma
Hist Subtype1: squamous_cell_carcinoma
Notes:
Source: RIKEN
Expression arrays: CASED_p_NCLE_RNA4_HG-U133_Plus_2_F04_383658
SNP arrays: FIEFS_p_NCLE_DNA_Affy5_GenomeWideSNP_6_D06_411024
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in TE-9

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM28 8 24211994 24211997 TE9_OESOPHAGUS 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADCK4 19 41197870 41197870 TE9_OESOPHAGUS 37 3'UTR SNP C T uc002oor.2 NUMBL_uc010xvq.... Hybrid_Cap... view
AKAP9 p.1335_1336insQ 7 91652178 91652179 TE9_OESOPHAGUS 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALDH7A1 p.G475A 5 125885686 125885686 TE9_OESOPHAGUS 37 Missense_Mutation SNP C G uc003ktx.2 ALDH7A1_uc003kt... Hybrid_Cap... view
ALPK1 4 113347609 113347610 TE9_OESOPHAGUS 37 Intron Ins - T rs68137453 uc003iap.3 ALPK1_uc003ian.... Hybrid_Cap...
ARFGEF1 p.S871L 8 68165772 68165772 TE9_OESOPHAGUS 37 Missense_Mutation SNP G A uc003xxo.1 ARFGEF1_uc003xx... Hybrid_Cap... view
ASTN1 p.R1067S 1 176853500 176853500 TE9_OESOPHAGUS 37 Missense_Mutation SNP C G uc001glc.2 ASTN1_uc001glb.... Hybrid_Cap... view
BCL11A p.S248L 2 60689304 60689304 TE9_OESOPHAGUS 37 Missense_Mutation SNP G A uc002sae.1 BCL11A_uc002sab... Hybrid_Cap... view
BCL3 p.S404C 19 45262718 45262718 TE9_OESOPHAGUS 37 Missense_Mutation SNP C G uc010xxe.1 Hybrid_Cap... view
BIRC6 p.S4205* 2 32770731 32770731 TE9_OESOPHAGUS 37 Nonsense_Mutation SNP C G uc010ezu.2 Hybrid_Cap... view
CACNB2 p.Q415E 10 18825066 18825066 TE9_OESOPHAGUS 37 Missense_Mutation SNP C G uc001ipr.2 CACNB2_uc009xjz... Hybrid_Cap... view
CAMK1G p.I475del 1 209786212 209786214 TE9_OESOPHAGUS 37 In_Frame_Del Del ATT - uc001hhd.2 CAMK1G_uc001hhe... Hybrid_Cap...
CDC42 1 22416676 22416676 TE9_OESOPHAGUS 37 Intron SNP C A uc010odr.1 CDC42_uc001bfp.... Hybrid_Cap... view
CDH11 p.D311G 16 65022127 65022127 TE9_OESOPHAGUS 37 Missense_Mutation SNP T C uc002eoi.2 CDH11_uc010cdn.... Hybrid_Cap... view
CDH3 p.L93M 16 68712067 68712067 TE9_OESOPHAGUS 37 Missense_Mutation SNP T A uc002ewf.2 CDH3_uc010vli.1... Hybrid_Cap... view
CHEK2 p.L269V 22 29115390 29115390 TE9_OESOPHAGUS 37 Missense_Mutation SNP G C uc003adt.1 CHEK2_uc003ads.... Hybrid_Cap... view
CHRNA5 15 78885615 78885616 TE9_OESOPHAGUS 37 3'UTR Ins - TA rs72534078 uc002bdy.2 CHRNA3_uc002bea... Hybrid_Cap...
CLK3 p.W499* 15 74920320 74920320 TE9_OESOPHAGUS 37 Nonsense_Mutation SNP G A uc010uln.1 CLK3_uc002ayg.3... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 TE9_OESOPHAGUS 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN1 p.N49H 12 41312491 41312491 TE9_OESOPHAGUS 37 Missense_Mutation SNP A C uc001rmm.1 CNTN1_uc009zjy.... Hybrid_Cap... view
COL1A1 p.D1219N 17 48264160 48264160 TE9_OESOPHAGUS 37 Missense_Mutation SNP C T rs72656338 uc002iqm.2 Hybrid_Cap... view
CSMD3 p.S2900* 8 113304855 113304855 TE9_OESOPHAGUS 37 Nonsense_Mutation SNP G C uc003ynu.2 CSMD3_uc003yns.... Hybrid_Cap... view
DDR2 1 162750211 162750211 TE9_OESOPHAGUS 37 3'UTR Del T - uc001gcf.2 DDR2_uc001gcg.2... Hybrid_Cap...
EDN1 6 12290729 12290729 TE9_OESOPHAGUS 37 5'UTR Del A - uc003nae.3 EDN1_uc010jpb.2... Hybrid_Cap...
EIF4A1 p.E268K 17 7480920 7480920 TE9_OESOPHAGUS 37 Missense_Mutation SNP G A uc002gho.1 EIF4A1_uc002ghr... Hybrid_Cap... view
EPHA10 p.M836L 1 38185637 38185637 TE9_OESOPHAGUS 37 Missense_Mutation SNP T G uc009vvi.2 EPHA10_uc001cbt... Hybrid_Cap... view
EPHA6 3 97367230 97367231 TE9_OESOPHAGUS 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
ETV1 7 14028708 14028708 TE9_OESOPHAGUS 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 TE9_OESOPHAGUS 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FLNB p.D1264E 3 58110126 58110126 TE9_OESOPHAGUS 37 Missense_Mutation SNP C A uc010hne.2 FLNB_uc003djj.2... Hybrid_Cap... view
FN1 2 216244182 216244185 TE9_OESOPHAGUS 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GPC3 X 132826331 132826331 TE9_OESOPHAGUS 37 Intron SNP C T uc010nrn.1 GPC3_uc004exd.1... Hybrid_Cap... view
GPR112 p.D2657del X 135474445 135474447 TE9_OESOPHAGUS 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 TE9_OESOPHAGUS 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 TE9_OESOPHAGUS 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HIF1A 14 62213929 62213930 TE9_OESOPHAGUS 37 3'UTR Ins - T rs67890419 uc001xfs.2 HIF1A_uc001xfq.... Hybrid_Cap...
HIPK3 p.R70T 11 33308169 33308169 TE9_OESOPHAGUS 37 Missense_Mutation SNP G C uc001mul.1 HIPK3_uc001mum.... Hybrid_Cap... view
HNF1A 12 121434630 121434631 TE9_OESOPHAGUS 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
ILK 11 6630029 6630029 TE9_OESOPHAGUS 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 TE9_OESOPHAGUS 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KSR2 12 117904910 117904910 TE9_OESOPHAGUS 37 3'UTR SNP T G uc001two.2 Hybrid_Cap... view
LRP2 p.E3168* 2 170042356 170042356 TE9_OESOPHAGUS 37 Nonsense_Mutation SNP C A uc002ues.2 Hybrid_Cap... view
LRRK1 p.E1048G 15 101588706 101588706 TE9_OESOPHAGUS 37 Missense_Mutation SNP A G uc002bwr.2 LRRK1_uc010usb.... Hybrid_Cap... view
MALT1 p.Q142fs 18 56363646 56363647 TE9_OESOPHAGUS 37 Frame_Shift_Ins Ins - G uc002lhm.1 MALT1_uc002lhn.... Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 TE9_OESOPHAGUS 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP2K1 15 66679649 66679650 TE9_OESOPHAGUS 37 5'UTR Ins - C rs67229745 uc010bhq.2 Hybrid_Cap...
MAP2K6 17 67516353 67516353 TE9_OESOPHAGUS 37 Intron SNP A T rs77138194 uc002jij.2 MAP2K6_uc002jii... Hybrid_Cap... view
MAP3K14 p.R218_splice 17 43364293 43364294 TE9_OESOPHAGUS 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K5 6 136878752 136878752 TE9_OESOPHAGUS 37 3'UTR Del T - rs79903899 uc003qhc.2 MAP3K5_uc011edj... Hybrid_Cap...
MAP3K9 p.R967Q 14 71197554 71197554 TE9_OESOPHAGUS 37 Missense_Mutation SNP C T uc001xml.2 MAP3K9_uc010ttk... Hybrid_Cap... view
MATK p.E339K 19 3779175 3779175 TE9_OESOPHAGUS 37 Missense_Mutation SNP C T uc002lyv.2 MATK_uc002lyt.2... Hybrid_Cap... view
MLL3 p.Y816fs 7 151945071 151945072 TE9_OESOPHAGUS 37 Frame_Shift_Ins Ins - T uc003wla.2 Hybrid_Cap...
MLLT3 9 20346377 20346378 TE9_OESOPHAGUS 37 3'UTR Ins - A rs66943046 uc003zoe.2 MLLT3_uc011lne.... Hybrid_Cap...
MYH11 p.Q193E 16 15880543 15880543 TE9_OESOPHAGUS 37 Missense_Mutation SNP G C uc002ddx.2 MYH11_uc002ddv.... Hybrid_Cap... view
MYLK 3 123332876 123332876 TE9_OESOPHAGUS 37 3'UTR Del T - rs115544676 uc003ego.2 MYLK_uc003egl.2... Hybrid_Cap...
MYLK2 p.R526_splice 20 30419659 30419659 TE9_OESOPHAGUS 37 Splice_Site_SNP SNP G A uc002wwq.2 MYLK2_uc002wws.... Hybrid_Cap... view
NCAM1 11 112832307 112832308 TE9_OESOPHAGUS 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 TE9_OESOPHAGUS 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA1 p.G1383L 2 24985637 24985638 TE9_OESOPHAGUS 37 Missense_Mutation DNP GG TT uc002rfk.2 NCOA1_uc010eye.... Hybrid_Cap...
NCOA3 p.Q1276del 20 46279864 46279866 TE9_OESOPHAGUS 37 In_Frame_Del Del CAA - rs1132443;rs28529067 uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NFIA 1 61921185 61921186 TE9_OESOPHAGUS 37 3'UTR Ins - T rs57270124;rs76131997 uc010oos.1 NFIA_uc001czy.2... Hybrid_Cap...
NGF p.F170L 1 115828907 115828907 TE9_OESOPHAGUS 37 Missense_Mutation SNP G C uc001efu.1 Hybrid_Cap... view
NPM1 5 170837734 170837734 TE9_OESOPHAGUS 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NPR1 1 153665919 153665920 TE9_OESOPHAGUS 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 TE9_OESOPHAGUS 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881822 50881823 TE9_OESOPHAGUS 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
OBSCN p.G1586C 1 228451986 228451987 TE9_OESOPHAGUS 37 Missense_Mutation DNP GG TT uc009xez.1 OBSCN_uc001hsn.... Hybrid_Cap...
PAX3 2 223066017 223066018 TE9_OESOPHAGUS 37 Intron Ins - C rs115619343 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX3 2 223158653 223158653 TE9_OESOPHAGUS 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PAX5 p.E4D 9 37034017 37034017 TE9_OESOPHAGUS 37 Missense_Mutation SNP C G uc003zzo.1 PAX5_uc011lpw.1... Hybrid_Cap... view
PCNA 20 5099361 5099361 TE9_OESOPHAGUS 37 Intron SNP C T uc002wlp.2 PCNA_uc002wlq.2... Hybrid_Cap... view
PDE4DIP p.L601fs 1 144915624 144915624 TE9_OESOPHAGUS 37 Frame_Shift_Del Del G - rs1778112 uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.E243fs 1 144923729 144923729 TE9_OESOPHAGUS 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PIK3C2A 11 17111198 17111199 TE9_OESOPHAGUS 37 3'UTR Del GT - uc001mmq.3 PIK3C2A_uc009yg... Hybrid_Cap...
PIK3R4 p.E529_splice 3 130447530 130447531 TE9_OESOPHAGUS 37 Splice_Site_Ins Ins - A rs5852606 uc003enj.2 Hybrid_Cap...
PKDCC p.E408G 2 42284361 42284361 TE9_OESOPHAGUS 37 Missense_Mutation SNP A G uc002rsg.2 Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 TE9_OESOPHAGUS 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PRKG1 10 52751088 52751089 TE9_OESOPHAGUS 37 5'UTR Ins - GCT rs67900156;rs71029335 uc001jjm.2 PRKG1_uc010qhp.... Hybrid_Cap...
PRKG2 4 82010772 82010772 TE9_OESOPHAGUS 37 3'UTR SNP A G uc003hmh.2 PRKG2_uc011ccf.... Hybrid_Cap... view
PTGS2 p.D159H 1 186646945 186646945 TE9_OESOPHAGUS 37 Missense_Mutation SNP C G uc001gsb.2 PTGS2_uc009wyo.... Hybrid_Cap... view
RIPK1 p.L168M 6 3083361 3083361 TE9_OESOPHAGUS 37 Missense_Mutation SNP C A uc010jni.2 RIPK1_uc003muv.... Hybrid_Cap... view
ROBO2 p.A576S 3 77614136 77614136 TE9_OESOPHAGUS 37 Missense_Mutation SNP G T uc003dpz.2 ROBO2_uc003dpy.... Hybrid_Cap... view
ROBO2 3 77666937 77666937 TE9_OESOPHAGUS 37 Intron Del A - rs78745603 uc003dpz.2 ROBO2_uc003dpy.... Hybrid_Cap...
RPS6KL1 14 75373626 75373627 TE9_OESOPHAGUS 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
RPTOR p.E614K 17 78857770 78857770 TE9_OESOPHAGUS 37 Missense_Mutation SNP G A uc002jyt.1 RPTOR_uc010wug.... Hybrid_Cap... view
SACS p.K4439M 13 23904699 23904699 TE9_OESOPHAGUS 37 Missense_Mutation SNP T A uc001uon.2 SACS_uc001uoo.2... Hybrid_Cap... view
SACS p.L2536V 13 23910409 23910409 TE9_OESOPHAGUS 37 Missense_Mutation SNP G C uc001uon.2 SACS_uc001uoo.2... Hybrid_Cap... view
SCYL2 p.P312A 12 100707281 100707281 TE9_OESOPHAGUS 37 Missense_Mutation SNP C G uc001thn.2 SCYL2_uc009ztw.... Hybrid_Cap... view
SGK196 p.228_229LD>FY 8 42977651 42977652 TE9_OESOPHAGUS 37 Missense_Mutation DNP GG TT uc003xpw.2 Hybrid_Cap...
SMARCB1 p.R210Q 22 24145583 24145583 TE9_OESOPHAGUS 37 Missense_Mutation SNP G A uc002zyd.2 SMARCB1_uc002zy... Hybrid_Cap... view
SMURF2 p.N292S 17 62568057 62568057 TE9_OESOPHAGUS 37 Missense_Mutation SNP T C uc002jep.1 SMURF2_uc002jeq... Hybrid_Cap... view
SRPK2 p.D415G 7 104782754 104782754 TE9_OESOPHAGUS 37 Missense_Mutation SNP T C uc003vcv.2 SRPK2_uc003vct.... Hybrid_Cap... view
STIL p.F367L 1 47753255 47753255 TE9_OESOPHAGUS 37 Missense_Mutation SNP G T uc001crd.1 TAL1_uc001crb.1... Hybrid_Cap... view
STK31 7 23872024 23872025 TE9_OESOPHAGUS 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
STK36 p.A804E 2 219559258 219559259 TE9_OESOPHAGUS 37 Missense_Mutation DNP CC AA uc002viu.2 STK36_uc002viv.... Hybrid_Cap...
TAF1L p.E763Q 9 32633291 32633291 TE9_OESOPHAGUS 37 Missense_Mutation SNP C G uc003zrg.1 Hybrid_Cap... view
TBCK p.I814V 4 107016770 107016770 TE9_OESOPHAGUS 37 Missense_Mutation SNP T C uc010ilv.2 TBCK_uc003hyb.2... Hybrid_Cap... view
TEC 4 48139307 48139310 TE9_OESOPHAGUS 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TLR4 p.F727V 9 120476585 120476585 TE9_OESOPHAGUS 37 Missense_Mutation SNP T G uc004bjz.2 TLR4_uc004bka.2... Hybrid_Cap... view
TMEM123 11 102269398 102269398 TE9_OESOPHAGUS 37 3'UTR Del G - uc001pha.2 TMEM123_uc009yx... Hybrid_Cap...
TNIK p.L1082V 3 170800109 170800109 TE9_OESOPHAGUS 37 Missense_Mutation SNP G C uc003fhh.2 TNIK_uc003fhi.2... Hybrid_Cap... view
TNK1 p.E409K 17 7289967 7289967 TE9_OESOPHAGUS 37 Missense_Mutation SNP G A uc002ggi.3 TNK1_uc002ggj.3... Hybrid_Cap... view
TP53 p.R267fs 17 7577137 7577137 TE9_OESOPHAGUS 37 Frame_Shift_Del Del C - uc002gim.2 TP53_uc002gig.1... Hybrid_Cap...
TP63 3 189507518 189507519 TE9_OESOPHAGUS 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TRPS1 8 116635872 116635873 TE9_OESOPHAGUS 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TTN 2 179391639 179391640 TE9_OESOPHAGUS 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
TTN 2 179614454 179614454 TE9_OESOPHAGUS 37 Intron SNP C A uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 TE9_OESOPHAGUS 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
WNK1 p.P1569L 12 994676 994676 TE9_OESOPHAGUS 37 Missense_Mutation SNP C T uc001qio.3 WNK1_uc001qip.3... Hybrid_Cap... view
ZAP70 p.A507V 2 98354257 98354257 TE9_OESOPHAGUS 37 Missense_Mutation SNP C T uc002syd.1 ZAP70_uc002sye.... Hybrid_Cap... view