Annotation Summary for Cell Line: TT2609-C02  

Cell line primary name: TT2609-C02
Cell line aliases:
Gender: M
Site Primary: thyroid
Histology: carcinoma
Hist Subtype1: follicular_carcinoma
Notes:
Source: DSMZ
Expression arrays: WATCH_p_NCLE_RNA8_HG-U133_Plus_2_G09_474750
SNP arrays: CHARY_p_NCLE_DNAAffy9_GenomeWideSNP_6_A04_490486
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in TT2609-C02

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ABCC4 p.V950I 13 95726537 95726537 TT2609C02_THYRO... 37 Missense_Mutation SNP C T uc001vmd.3 ABCC4_uc010afk.... Hybrid_Cap... view
ABL2 1 179086419 179086420 TT2609C02_THYRO... 37 Intron Ins - A rs72207641 uc001gmj.3 ABL2_uc010pnf.1... Hybrid_Cap...
ADAM17 2 9630245 9630245 TT2609C02_THYRO... 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM17 p.D657G 2 9633899 9633899 TT2609C02_THYRO... 37 Missense_Mutation SNP T C uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap... view
ADAM28 8 24211994 24211997 TT2609C02_THYRO... 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 TT2609C02_THYRO... 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
BCL3 19 45262965 45262965 TT2609C02_THYRO... 37 3'UTR Del C - uc010xxe.1 Hybrid_Cap...
BIRC5 17 76219784 76219785 TT2609C02_THYRO... 37 3'UTR Ins - AA uc002jvf.2 BIRC5_uc002jvg.... Hybrid_Cap...
C17ORF37 17 37885640 37885641 TT2609C02_THYRO... 37 3'UTR Ins - G rs75811535 uc002hsq.2 Hybrid_Cap...
CABC1 1 227171585 227171585 TT2609C02_THYRO... 37 Intron Del T - uc001hqm.1 CABC1_uc001hqn.... Hybrid_Cap...
CARD14 17 78182309 78182312 TT2609C02_THYRO... 37 3'UTR Del CACA - uc002jxw.1 CARD14_uc002jxt... Hybrid_Cap...
CCNT1 p.F27F 12 49110378 49110378 TT2609C02_THYRO... 37 Silent SNP A G uc001rse.1 CCNT1_uc009zkz.... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 TT2609C02_THYRO... 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CLTCL1 p.P212fs 22 19230342 19230343 TT2609C02_THYRO... 37 Frame_Shift_Ins Ins - A uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CSMD3 p.H1835Y 8 113421154 113421154 TT2609C02_THYRO... 37 Missense_Mutation SNP G A uc003ynu.2 CSMD3_uc003yns.... Hybrid_Cap... view
CSNK2A1 p.S217N 20 470497 470497 TT2609C02_THYRO... 37 Missense_Mutation SNP C T uc002wdw.1 CSNK2A1_uc002wd... Hybrid_Cap... view
CXCL12 10 44873992 44873993 TT2609C02_THYRO... 37 Intron Ins - CT rs117617571 uc001jbh.2 CXCL12_uc001jbf... Hybrid_Cap...
CYP24A1 p.R396Q 20 52774674 52774674 TT2609C02_THYRO... 37 Missense_Mutation SNP C T uc002xwv.2 CYP24A1_uc002xw... Hybrid_Cap... view
DYRK1A 21 38884966 38884967 TT2609C02_THYRO... 37 3'UTR Ins - T rs72430212 uc002ywk.2 DYRK1A_uc002ywi... Hybrid_Cap...
EIF4E 4 99808137 99808141 TT2609C02_THYRO... 37 Intron Del TTAAA - uc011ceb.1 EIF4E_uc011cea.... Hybrid_Cap...
EPHA4 p.R927W 2 222291251 222291251 TT2609C02_THYRO... 37 Missense_Mutation SNP G A uc002vmq.2 EPHA4_uc002vmr.... Hybrid_Cap... view
EPHA6 3 97367230 97367231 TT2609C02_THYRO... 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
EPHB6 7 142568771 142568771 TT2609C02_THYRO... 37 3'UTR Del C - uc011kst.1 EPHB6_uc011ksu.... Hybrid_Cap...
ERBB4 2 213403257 213403257 TT2609C02_THYRO... 37 5'UTR SNP T C uc002veg.1 ERBB4_uc002veh.... Hybrid_Cap... view
ETV1 7 14028708 14028708 TT2609C02_THYRO... 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 TT2609C02_THYRO... 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 TT2609C02_THYRO... 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 TT2609C02_THYRO... 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLNA X 153577132 153577133 TT2609C02_THYRO... 37 3'UTR Ins - CA rs10692455;rs71733538 uc004fkk.2 FLNA_uc004fki.2... Hybrid_Cap...
FN1 2 216244182 216244185 TT2609C02_THYRO... 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
FZD1 p.93_94insP 7 90894459 90894460 TT2609C02_THYRO... 37 In_Frame_Ins Ins - CCG uc003ula.2 Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 TT2609C02_THYRO... 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 TT2609C02_THYRO... 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GRIK1 p.E512Q 21 30961194 30961194 TT2609C02_THYRO... 37 Missense_Mutation SNP C G uc011acs.1 GRIK1_uc002ynn.... Hybrid_Cap... view
GUCY2C 12 14827464 14827466 TT2609C02_THYRO... 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HMGA2 12 66308868 66308868 TT2609C02_THYRO... 37 3'UTR SNP G C uc001ssu.1 HMGA2_uc001ssw.... Hybrid_Cap... view
HNF1A 12 121434630 121434631 TT2609C02_THYRO... 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HSP90AA1 p.E619D 14 102549635 102549635 TT2609C02_THYRO... 37 Missense_Mutation SNP C G uc001ykv.3 HSP90AA1_uc001y... Hybrid_Cap... view
HSP90B1 p.E791del 12 104341188 104341190 TT2609C02_THYRO... 37 In_Frame_Del Del GAA - rs117491163 uc001tkb.1 HSP90B1_uc010sw... Hybrid_Cap...
ILK 11 6630029 6630029 TT2609C02_THYRO... 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 TT2609C02_THYRO... 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
LIF p.Y159H 22 30639774 30639774 TT2609C02_THYRO... 37 Missense_Mutation SNP A G uc003agz.2 LIF_uc011aks.1_... Hybrid_Cap... view
LYL1 p.R223G 19 13210309 13210309 TT2609C02_THYRO... 37 Missense_Mutation SNP G C uc002mwi.2 Hybrid_Cap... view
MAF 16 79628537 79628537 TT2609C02_THYRO... 37 Intron Del T - uc002ffm.2 MAF_uc002ffn.2_... Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 TT2609C02_THYRO... 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 TT2609C02_THYRO... 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP4K4 2 102477501 102477501 TT2609C02_THYRO... 37 Intron SNP G A uc002tbc.2 MAP4K4_uc002tbd... Hybrid_Cap... view
MAPKBP1 15 42111746 42111746 TT2609C02_THYRO... 37 Intron Del G - uc001zok.3 MAPKBP1_uc001zo... Hybrid_Cap...
MLKL p.D369fs 16 74709591 74709594 TT2609C02_THYRO... 37 Frame_Shift_Del Del TCTG - uc002fdb.2 MLKL_uc002fdc.2... Hybrid_Cap...
MYH11 p.T1786K 16 15811165 15811165 TT2609C02_THYRO... 37 Missense_Mutation SNP G T uc002ddx.2 MYH11_uc002ddv.... Hybrid_Cap... view
MYH9 p.N675K 22 36702472 36702472 TT2609C02_THYRO... 37 Missense_Mutation SNP G C uc003apg.2 MYH9_uc003aph.1... Hybrid_Cap... view
MYT1 20 62871868 62871868 TT2609C02_THYRO... 37 3'UTR SNP G A uc002yii.2 MYT1_uc002yij.2... Hybrid_Cap... view
NACA p.L360fs 12 57114233 57114234 TT2609C02_THYRO... 37 Frame_Shift_Ins Ins - A uc009zoy.1 NACA_uc001slz.2... Hybrid_Cap...
NAV3 p.K501R 12 78400820 78400820 TT2609C02_THYRO... 37 Missense_Mutation SNP A G uc001syp.2 NAV3_uc001syo.2... Hybrid_Cap... view
NCAM1 11 112832307 112832308 TT2609C02_THYRO... 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 TT2609C02_THYRO... 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 TT2609C02_THYRO... 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NOS3 p.R388W 7 150697616 150697616 TT2609C02_THYRO... 37 Missense_Mutation SNP C T uc003wif.2 NOS3_uc011kuy.1... Hybrid_Cap... view
NOTCH4 p.W1813C 6 32163787 32163787 TT2609C02_THYRO... 37 Missense_Mutation SNP C G uc003obb.2 GPSM3_uc003oaz.... Hybrid_Cap... view
NPR1 1 153665919 153665920 TT2609C02_THYRO... 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 TT2609C02_THYRO... 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NRAS p.Q61R 1 115256529 115256529 TT2609C02_THYRO... 37 Missense_Mutation SNP T C rs11554290 uc009wgu.2 Hybrid_Cap... view
PAK3 p.L567V X 110463631 110463631 TT2609C02_THYRO... 37 Missense_Mutation SNP C G uc010npv.1 PAK3_uc010npt.1... Hybrid_Cap... view
PAX3 2 223158653 223158653 TT2609C02_THYRO... 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PCDH15 p.N102S 10 56138570 56138570 TT2609C02_THYRO... 37 Missense_Mutation SNP T C uc010qhy.1 PCDH15_uc010qhq... Hybrid_Cap... view
PCM1 p.E2011fs 8 17883149 17883150 TT2609C02_THYRO... 37 Frame_Shift_Del Del GA - uc003wyi.3 PCM1_uc011kyh.1... Hybrid_Cap...
PDE4DIP p.E243fs 1 144923729 144923729 TT2609C02_THYRO... 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PIK3C2G p.P129del 12 18435399 18435401 TT2609C02_THYRO... 37 In_Frame_Del Del CCC - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PKHD1 p.L3275I 6 51612591 51612591 TT2609C02_THYRO... 37 Missense_Mutation SNP G T uc003pah.1 PKHD1_uc010jzn.... Hybrid_Cap... view
PPP3CB p.G77A 10 75239131 75239131 TT2609C02_THYRO... 37 Missense_Mutation SNP C G uc001juf.2 PPP3CB_uc001jue... Hybrid_Cap... view
PPP3R2 9 104356619 104356619 TT2609C02_THYRO... 37 3'UTR SNP C T uc004bbr.2 GRIN3A_uc004bbp... Hybrid_Cap... view
PREX2 8 69017587 69017587 TT2609C02_THYRO... 37 Intron SNP C A uc003xxv.1 PREX2_uc003xxu.... Hybrid_Cap... view
PRKAA2 1 57111042 57111042 TT2609C02_THYRO... 37 5'UTR SNP G A uc001cyk.3 Hybrid_Cap... view
PRKCA 17 64298959 64298960 TT2609C02_THYRO... 37 5'UTR Ins - G rs71160558 uc002jfp.1 PRKCA_uc002jfo.... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 TT2609C02_THYRO... 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PRKDC p.E596Q 8 48843338 48843338 TT2609C02_THYRO... 37 Missense_Mutation SNP C G uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap... view
PTCH2 p.H622N 1 45293709 45293709 TT2609C02_THYRO... 37 Missense_Mutation SNP G T rs11573586 uc010olf.1 PTCH2_uc010olg.... Hybrid_Cap... view
RAPGEF2 p.E990K 4 160266430 160266430 TT2609C02_THYRO... 37 Missense_Mutation SNP G A uc003iqg.3 Hybrid_Cap... view
RPS6KA5 14 91360733 91360734 TT2609C02_THYRO... 37 Intron Ins - T rs77438853 uc001xys.2 RPS6KA5_uc010tw... Hybrid_Cap...
SEPT9 17 75494787 75494788 TT2609C02_THYRO... 37 3'UTR Ins - C rs5822173 uc002jts.3 SEPT9_uc010wtk.... Hybrid_Cap...
TAF15 p.Y177C 17 34151127 34151127 TT2609C02_THYRO... 37 Missense_Mutation SNP A G uc002hkd.2 TAF15_uc010ctw.... Hybrid_Cap... view
TEC 4 48139307 48139310 TT2609C02_THYRO... 37 3'UTR Del TTAT - rs79098351 uc003gxz.2 Hybrid_Cap...
TNRC6B p.Q1328del 22 40697177 40697179 TT2609C02_THYRO... 37 In_Frame_Del Del GCA - rs114291931 uc011aor.1 TNRC6B_uc003aym... Hybrid_Cap...
TP53 p.R273C 17 7577121 7577121 TT2609C02_THYRO... 37 Missense_Mutation SNP G A uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TRPM6 9 77391012 77391012 TT2609C02_THYRO... 37 Intron SNP A G uc004ajl.1 TRPM6_uc004ajk.... Hybrid_Cap... view
TRPS1 p.M1247I 8 116426395 116426395 TT2609C02_THYRO... 37 Missense_Mutation SNP C G uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap... view
TTN p.M31575T 2 179398914 179398914 TT2609C02_THYRO... 37 Missense_Mutation SNP A G uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.R28504C 2 179413139 179413139 TT2609C02_THYRO... 37 Missense_Mutation SNP G A uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
TTN p.L13947V 2 179477993 179477993 TT2609C02_THYRO... 37 Missense_Mutation SNP G C uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 TT2609C02_THYRO... 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
WAS p.I207M X 48545231 48545231 TT2609C02_THYRO... 37 Missense_Mutation SNP C G uc004dkm.3 Hybrid_Cap... view
ZNF608 p.T758A 5 123983805 123983805 TT2609C02_THYRO... 37 Missense_Mutation SNP T C uc003ktq.1 ZNF608_uc003ktr... Hybrid_Cap... view