Annotation Summary for Cell Line: TT  

Cell line primary name: TT
Cell line aliases:
Gender: F
Site Primary: thyroid
Histology: carcinoma
Hist Subtype1: medullary_carcinoma
Notes:
Source: ATCC
Expression arrays: SILOS_p_NCLE_RNA9_HG-U133_Plus_2_B07_523626
SNP arrays: AWASH_p_NCLE_DNAAffy10_GenomeWideSNP_6_D09_542814
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in TT

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ADAM29 p.L691del 4 175898744 175898746 TT_THYROID 37 In_Frame_Del Del TTA - uc003iuc.2 ADAM29_uc003iud... Hybrid_Cap...
ADAMTS20 p.G1699V 12 43770356 43770356 TT_THYROID 37 Missense_Mutation SNP C A uc010skx.1 Hybrid_Cap... view
AKAP9 p.1335_1336insQ 7 91652178 91652179 TT_THYROID 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
AKAP9 p.I2804T 7 91712734 91712734 TT_THYROID 37 Missense_Mutation SNP T C uc003ulg.2 AKAP9_uc003ulf.... Hybrid_Cap... view
APC p.T2635P 5 112179194 112179194 TT_THYROID 37 Missense_Mutation SNP A C uc010jby.2 APC_uc011cvt.1_... Hybrid_Cap... view
ARHGEF12 p.A624V 11 120322248 120322248 TT_THYROID 37 Missense_Mutation SNP C T uc001pxl.1 ARHGEF12_uc009z... Hybrid_Cap... view
AURKC 19 57742494 57742507 TT_THYROID 37 5'UTR Del GGACG... - rs67926438;rs112039303;rs59094959 uc002qoe.2 AURKC_uc002qoc.... Hybrid_Cap...
AXL p.Q432P 19 41745608 41745608 TT_THYROID 37 Missense_Mutation SNP A C uc010ehj.2 CYP2F1_uc010xvw... Hybrid_Cap... view
BCR 22 23631813 23631814 TT_THYROID 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
BCR 22 23632777 23632778 TT_THYROID 37 Intron Ins - T uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
C15ORF2 p.G1113C 15 24924351 24924351 TT_THYROID 37 Missense_Mutation SNP G T uc001ywo.2 Hybrid_Cap... view
C17ORF37 17 37885640 37885641 TT_THYROID 37 3'UTR Ins - G rs75811535 uc002hsq.2 Hybrid_Cap...
CABC1 1 227171585 227171585 TT_THYROID 37 Intron Del T - uc001hqm.1 CABC1_uc001hqn.... Hybrid_Cap...
CHD1 p.P1684del 5 98192165 98192167 TT_THYROID 37 In_Frame_Del Del AGG - rs79267787;rs61749618 uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap...
CIITA p.D931V 16 11003017 11003017 TT_THYROID 37 Missense_Mutation SNP A T uc002daj.3 CIITA_uc002dai.... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 TT_THYROID 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN6 p.N957H 3 1444053 1444053 TT_THYROID 37 Missense_Mutation SNP A C uc003boz.2 CNTN6_uc011asj.... Hybrid_Cap... view
COL1A1 17 48262859 48262859 TT_THYROID 37 3'UTR SNP G A uc002iqm.2 Hybrid_Cap... view
COPS5 8 67963381 67963381 TT_THYROID 37 Intron SNP T G uc003xxe.2 COPS5_uc003xxd.... Hybrid_Cap... view
CXCL12 10 44873992 44873993 TT_THYROID 37 Intron Ins - CT rs117617571 uc001jbh.2 CXCL12_uc001jbf... Hybrid_Cap...
DNAH8 p.K2281fs 6 38841024 38841024 TT_THYROID 37 Frame_Shift_Del Del A - uc003ooe.1 Hybrid_Cap...
DNAH8 p.R3380_splice 6 38890963 38890963 TT_THYROID 37 Splice_Site_SNP SNP T C uc003ooe.1 Hybrid_Cap... view
DNAH8 6 38952246 38952247 TT_THYROID 37 Intron Ins - CA rs34819199 uc003ooe.1 DNAH8_uc003oog.... Hybrid_Cap...
ECM1 p.P46P 1 150482153 150482153 TT_THYROID 37 Silent SNP C T uc001euu.2 ECM1_uc010pce.1... Hybrid_Cap... view
EDN1 6 12296385 12296385 TT_THYROID 37 3'UTR SNP G T uc003nae.3 EDN1_uc003nad.2... Hybrid_Cap... view
EP300 22 41574970 41574972 TT_THYROID 37 3'UTR Del GTA - rs76489032 uc003azl.3 Hybrid_Cap...
EPHA1 p.R88H 7 143098586 143098586 TT_THYROID 37 Missense_Mutation SNP C T uc003wcz.2 Hybrid_Cap... view
EPHA2 p.D596E 1 16460052 16460052 TT_THYROID 37 Missense_Mutation SNP G C uc001aya.1 Hybrid_Cap... view
EPHA6 3 97367230 97367231 TT_THYROID 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
ERCC3 2 128047671 128047675 TT_THYROID 37 Intron Del TTCTC - uc002toh.1 ERCC3_uc002toe.... Hybrid_Cap...
ERG p.N366K 21 39755688 39755688 TT_THYROID 37 Missense_Mutation SNP G T uc010gnw.2 ERG_uc002yxa.2_... Hybrid_Cap... view
ETV1 7 14028708 14028708 TT_THYROID 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 TT_THYROID 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 TT_THYROID 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 TT_THYROID 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FLNC p.G947fs 7 128483879 128483880 TT_THYROID 37 Frame_Shift_Ins Ins - G uc003vnz.3 FLNC_uc003voa.3... Hybrid_Cap...
FN1 2 216244182 216244185 TT_THYROID 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GCK p.T6T 7 44198702 44198702 TT_THYROID 37 Silent SNP T C uc003tkk.1 GCK_uc003tkj.1_... Hybrid_Cap... view
GLI2 p.V595I 2 121742146 121742146 TT_THYROID 37 Missense_Mutation SNP G A uc010flp.2 GLI2_uc002tmq.1... Hybrid_Cap... view
GRIA3 X 122318386 122318387 TT_THYROID 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
HECW1 p.E729Q 7 43484956 43484956 TT_THYROID 37 Missense_Mutation SNP G C uc003tid.1 HECW1_uc011kbi.... Hybrid_Cap... view
HIP1 p.T660M 7 75183810 75183810 TT_THYROID 37 Missense_Mutation SNP G A uc003uds.1 HIP1_uc011kfz.1... Hybrid_Cap... view
HNF1A 12 121434630 121434631 TT_THYROID 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
IL6ST p.P224L 5 55259322 55259322 TT_THYROID 37 Missense_Mutation SNP G A uc003jqq.2 IL6ST_uc010iwb.... Hybrid_Cap... view
ILK 11 6630029 6630029 TT_THYROID 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 TT_THYROID 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480672 51480675 TT_THYROID 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LGR5 p.R144P 12 71946855 71946855 TT_THYROID 37 Missense_Mutation SNP G C uc001swl.2 LGR5_uc001swm.2... Hybrid_Cap... view
LRP1 p.A2179V 12 57579386 57579386 TT_THYROID 37 Missense_Mutation SNP C T uc001snd.2 Hybrid_Cap... view
MAML2 p.604_607QQQQ>Q 11 95825375 95825383 TT_THYROID 37 In_Frame_Del Del TGCTG... - rs113349418 uc001pfw.1 Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 TT_THYROID 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 TT_THYROID 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP4K3 2 39477749 39477751 TT_THYROID 37 3'UTR Del ACA - uc002rro.2 MAP4K3_uc002rrp... Hybrid_Cap...
MAPK14 6 36076345 36076354 TT_THYROID 37 3'UTR Del GTGTG... - rs80147786 uc003olp.2 MAPK14_uc003olq... Hybrid_Cap...
MLH1 3 37092174 37092176 TT_THYROID 37 3'UTR Del TTC - uc003cgl.2 MLH1_uc011aye.1... Hybrid_Cap...
MSH3 p.PPA66del 5 79950742 79950750 TT_THYROID 37 In_Frame_Del Del CCCCC... - rs60484572;rs1047489 uc003kgz.2 DHFR_uc011ctl.1... Hybrid_Cap...
MYLK p.E1430_splice 3 123368043 123368044 TT_THYROID 37 Splice_Site_Ins Ins - G rs41431347 uc003ego.2 MYLK_uc010hrr.2... Hybrid_Cap...
NCAM1 11 112832340 112832340 TT_THYROID 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.Q1276del 20 46279837 46279839 TT_THYROID 37 In_Frame_Del Del CAG - rs2664555 uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NOV 8 120428700 120428700 TT_THYROID 37 5'UTR SNP G A uc003yoq.2 Hybrid_Cap... view
NPR1 1 153665919 153665920 TT_THYROID 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 TT_THYROID 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
PAX3 2 223158653 223158653 TT_THYROID 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PRDM16 p.C157C 1 3301748 3301748 TT_THYROID 37 Silent SNP C T uc001akf.2 PRDM16_uc001akc... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 TT_THYROID 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 TT_THYROID 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RET p.C634W 10 43609950 43609950 TT_THYROID 37 Missense_Mutation SNP C G rs77709286 uc001jal.2 RET_uc001jak.1_... Hybrid_Cap... view
RPN1 p.R494H 3 128341167 128341167 TT_THYROID 37 Missense_Mutation SNP C T uc003ekr.1 RPN1_uc011bkq.1... Hybrid_Cap... view
SCARA5 8 27729243 27729243 TT_THYROID 37 3'UTR SNP C A uc003xgj.2 SCARA5_uc010luz... Hybrid_Cap... view
SHC1 p.S572S 1 154936318 154936318 TT_THYROID 37 Silent SNP G A uc001ffw.2 PYGO2_uc001fft.... Hybrid_Cap... view
STK25 2 242435659 242435662 TT_THYROID 37 Intron Del AAGG - rs3215138;rs75497042 uc002wbm.2 STK25_uc002wbk.... Hybrid_Cap...
STK31 7 23872024 23872025 TT_THYROID 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TGFB2 1 218519928 218519929 TT_THYROID 37 5'UTR Ins - AAAC uc001hln.2 TGFB2_uc001hll.... Hybrid_Cap...
TP53BP1 p.D1353N 15 43714096 43714096 TT_THYROID 37 Missense_Mutation SNP C T uc001zrr.3 TP53BP1_uc010ud... Hybrid_Cap... view
TPM3 1 154144660 154144660 TT_THYROID 37 Intron SNP C T uc001fec.1 TPM3_uc001fdx.1... Hybrid_Cap... view
TRIM33 1 114940215 114940216 TT_THYROID 37 3'UTR Ins - G rs68133208 uc001eew.2 TRIM33_uc010owr... Hybrid_Cap...
TRIP13 5 908644 908644 TT_THYROID 37 Intron SNP A G uc003jbr.2 TRIP13_uc010ite... Hybrid_Cap... view
VEGFA p.Y346N 6 43748542 43748542 TT_THYROID 37 Missense_Mutation SNP T A uc003owh.2 VEGFA_uc003owd.... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 TT_THYROID 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
VRK1 p.N234S 14 97321685 97321685 TT_THYROID 37 Missense_Mutation SNP A G uc001yft.2 Hybrid_Cap... view
WNK4 p.P819L 17 40946895 40946895 TT_THYROID 37 Missense_Mutation SNP C T uc002ibj.2 WNK4_uc010wgx.1... Hybrid_Cap... view