Annotation Summary for Cell Line: VCaP  

Cell line primary name: VCaP
Cell line aliases:
Gender: M
Site Primary: prostate
Histology: carcinoma
Hist Subtype1: adenocarcinoma
Notes:
Source: ATCC
Expression arrays: METIS_p_NCLE_RNA1_Human_U133_Plus_2.0_B06_240884
SNP arrays: ARLES_p_NCLE_DNAAffy2_S_GenomeWideSNP_6_F07_256134
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in VCaP

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
ACACA 17 35766564 35766564 VCAP_PROSTATE 37 5'UTR Del A - uc002hno.2 ACACA_uc002hnn.... Hybrid_Cap...
ADAM17 2 9630245 9630245 VCAP_PROSTATE 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 VCAP_PROSTATE 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
ADAM29 p.L691del 4 175898744 175898746 VCAP_PROSTATE 37 In_Frame_Del Del TTA - uc003iuc.2 ADAM29_uc003iud... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 VCAP_PROSTATE 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.1335_1336insQ 7 91652178 91652179 VCAP_PROSTATE 37 In_Frame_Ins Ins - AAC rs34756483 uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap...
ALPK2 p.EDTST1006del 18 56204388 56204402 VCAP_PROSTATE 37 In_Frame_Del Del CAGTT... - rs60644017;rs117623369 uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
ALPK3 p.S250_splice 15 85366559 85366559 VCAP_PROSTATE 37 Splice_Site_SNP SNP A G uc002ble.2 Hybrid_Cap... view
BCL7A 12 122497185 122497185 VCAP_PROSTATE 37 3'UTR SNP A G uc001ubo.2 BCL7A_uc001ubp.... Hybrid_Cap... view
C6ORF97 p.Q285E 6 151894387 151894387 VCAP_PROSTATE 37 Missense_Mutation SNP C G uc003qol.2 Hybrid_Cap... view
CHD1 p.P1684del 5 98192165 98192167 VCAP_PROSTATE 37 In_Frame_Del Del AGG - rs79267787;rs61749618 uc003knf.2 CHD1_uc010jbn.2... Hybrid_Cap...
CLTCL1 p.V1201_splice 22 19189003 19189004 VCAP_PROSTATE 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CREB3L2 p.T100del 7 137612914 137612916 VCAP_PROSTATE 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CSNK1G3 p.L247F 5 122923827 122923827 VCAP_PROSTATE 37 Missense_Mutation SNP C T uc003ktl.2 CSNK1G3_uc003kt... Hybrid_Cap... view
DRD2 11 113285014 113285014 VCAP_PROSTATE 37 Intron SNP C A uc001pnz.2 DRD2_uc010rwv.1... Hybrid_Cap... view
EP300 22 41574970 41574972 VCAP_PROSTATE 37 3'UTR Del GTA - rs76489032 uc003azl.3 Hybrid_Cap...
EPHA6 p.R268C 3 96706525 96706525 VCAP_PROSTATE 37 Missense_Mutation SNP C T uc010how.1 EPHA6_uc003drp.... Hybrid_Cap... view
EPHA6 3 97367230 97367231 VCAP_PROSTATE 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
ETV1 7 14028708 14028708 VCAP_PROSTATE 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
FGFR1OP 6 167453519 167453520 VCAP_PROSTATE 37 3'UTR Ins - T rs115519488 uc003qvj.2 CCR6_uc003qvl.2... Hybrid_Cap...
FGFR3 4 1809128 1809129 VCAP_PROSTATE 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 VCAP_PROSTATE 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FN1 2 216244182 216244185 VCAP_PROSTATE 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
FZD1 p.93_94insP 7 90894459 90894460 VCAP_PROSTATE 37 In_Frame_Ins Ins - CCG uc003ula.2 Hybrid_Cap...
GPC3 X 132888208 132888208 VCAP_PROSTATE 37 Intron Del A - uc010nrn.1 GPC3_uc004exd.1... Hybrid_Cap...
GPR112 p.D2657del X 135474445 135474447 VCAP_PROSTATE 37 In_Frame_Del Del GAT - rs3030295 uc004ezu.1 GPR112_uc010nsb... Hybrid_Cap...
GRIA3 X 122318386 122318387 VCAP_PROSTATE 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 VCAP_PROSTATE 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
HNF1A 12 121434630 121434631 VCAP_PROSTATE 37 Intron Ins - TCATTCAT rs75100977 uc010szn.1 HNF1A_uc001tze.... Hybrid_Cap...
HSPA1B 6 31797747 31797747 VCAP_PROSTATE 37 3'UTR SNP C T uc003nxk.2 Hybrid_Cap... view
ILK 11 6630029 6630029 VCAP_PROSTATE 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
LIF 22 30639563 30639563 VCAP_PROSTATE 37 3'UTR SNP C A uc003agz.2 LIF_uc011aks.1_... Hybrid_Cap... view
MAML3 p.Q767_splice 4 140651585 140651587 VCAP_PROSTATE 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 VCAP_PROSTATE 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 VCAP_PROSTATE 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP4K4 p.Q402R 2 102460745 102460745 VCAP_PROSTATE 37 Missense_Mutation SNP A G uc002tbc.2 MAP4K4_uc002tbd... Hybrid_Cap... view
MAPKAPK3 3 50685575 50685575 VCAP_PROSTATE 37 3'UTR Del A - rs76026164 uc003day.1 MAPKAPK3_uc003d... Hybrid_Cap...
MLLT4 6 168312238 168312238 VCAP_PROSTATE 37 Intron SNP G C uc003qwd.2 MLLT4_uc003qwb.... Hybrid_Cap... view
MSH3 p.PPA66del 5 79950742 79950750 VCAP_PROSTATE 37 In_Frame_Del Del CCCCC... - rs60484572;rs1047489 uc003kgz.2 DHFR_uc011ctl.1... Hybrid_Cap...
MSH6 p.T1085fs 2 48030639 48030640 VCAP_PROSTATE 37 Frame_Shift_Ins Ins - C rs63750431 uc002rwd.3 MSH6_uc010fbj.2... Hybrid_Cap...
NCAM1 11 112832307 112832308 VCAP_PROSTATE 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 VCAP_PROSTATE 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NEDD8 14 24686217 24686217 VCAP_PROSTATE 37 3'UTR SNP A T uc001wnn.2 TM9SF1_uc010tob... Hybrid_Cap... view
NEK3 p.K313_splice 13 52718050 52718051 VCAP_PROSTATE 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NPAT p.S726del 11 108043536 108043538 VCAP_PROSTATE 37 In_Frame_Del Del AGA - uc001pjz.3 NPAT_uc010rvv.1... Hybrid_Cap...
NPR1 1 153665919 153665920 VCAP_PROSTATE 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 VCAP_PROSTATE 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
OBSCN p.T7621I 1 228563784 228563784 VCAP_PROSTATE 37 Missense_Mutation SNP C T uc009xez.1 OBSCN_uc001hsr.... Hybrid_Cap... view
PAX3 2 223158653 223158653 VCAP_PROSTATE 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PGGT1B 5 114548071 114548072 VCAP_PROSTATE 37 3'UTR Ins - C uc003kqw.3 PGGT1B_uc003kqx... Hybrid_Cap...
PRKDC p.L1244fs 8 48805816 48805817 VCAP_PROSTATE 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
RAB15 14 65415196 65415196 VCAP_PROSTATE 37 3'UTR SNP G A uc001xhz.2 FNTB_uc010tsl.1... Hybrid_Cap... view
RAPGEF2 4 160189200 160189201 VCAP_PROSTATE 37 5'UTR Ins - T rs72011511 uc003iqg.3 Hybrid_Cap...
RBPJ 4 26431822 26431822 VCAP_PROSTATE 37 Intron Del A - rs76214390 uc003grx.1 RBPJ_uc003gry.1... Hybrid_Cap...
RGL4 p.R83Q 22 24034590 24034590 VCAP_PROSTATE 37 Missense_Mutation SNP G A uc002zxn.2 LOC91316_uc002z... Hybrid_Cap... view
RICTOR p.G407A 5 38966822 38966822 VCAP_PROSTATE 37 Missense_Mutation SNP C G uc003jlo.2 RICTOR_uc003jlp... Hybrid_Cap... view
RPS6KL1 14 75373626 75373627 VCAP_PROSTATE 37 3'UTR Ins - TGAT uc001xqx.1 RPS6KL1_uc001xq... Hybrid_Cap...
STAR 8 38008463 38008463 VCAP_PROSTATE 37 5'UTR SNP G A uc003xkv.1 STAR_uc010lwc.1... Hybrid_Cap... view
TCF21 6 134210497 134210498 VCAP_PROSTATE 37 5'UTR Ins - TCTC rs35199378 uc003qei.3 TCF21_uc003qej.... Hybrid_Cap...
THBS3 p.L13L 1 155177629 155177629 VCAP_PROSTATE 37 Silent SNP G A uc001fix.2 RAG1AP1_uc010pe... Hybrid_Cap... view
TP53 p.R248W 17 7577539 7577539 VCAP_PROSTATE 37 Missense_Mutation SNP G A uc002gim.2 TP53_uc002gig.1... Hybrid_Cap... view
TP63 3 189507518 189507519 VCAP_PROSTATE 37 Intron Ins - AG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TRPS1 8 116635872 116635873 VCAP_PROSTATE 37 5'UTR Ins - A rs76893349 uc003yny.2 TRPS1_uc011lhy.... Hybrid_Cap...
TSSK4 p.L19R 14 24675185 24675185 VCAP_PROSTATE 37 Missense_Mutation SNP T G uc001wnh.2 TM9SF1_uc010tob... Hybrid_Cap... view
TTN 2 179391639 179391640 VCAP_PROSTATE 37 3'UTR Ins - T rs36037175 uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap...
VEGFC p.S419_splice 4 177605082 177605084 VCAP_PROSTATE 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
WNK4 17 40945874 40945875 VCAP_PROSTATE 37 Intron Ins - T uc002ibj.2 WNK4_uc010wgx.1... Hybrid_Cap...
YAP1 p.A347S 11 102094359 102094359 VCAP_PROSTATE 37 Missense_Mutation SNP G T uc001pgt.2 YAP1_uc001pgs.2... Hybrid_Cap... view