Annotation Summary for Cell Line: VMRC-RCW  

Cell line primary name: VMRC-RCW
Cell line aliases:
Gender: M
Site Primary: kidney
Histology: carcinoma
Hist Subtype1: NS
Notes:
Source: RIKEN
Expression arrays: BUNDS_p_NCLE_RNA5_HG-U133_Plus_2_G12_419818
SNP arrays: FIEFS_p_NCLE_DNA_Affy5_GenomeWideSNP_6_D04_411028
Oncomap: yes
Hybrid Capture Sequencing: yes


Mutations in VMRC-RCW

GeneProtein
Change
ChrStartEnd SampleNCBI
Build
Variant
Classification
Variant TypeReference
Allele
Tumor
Allele 1
dbSNP IDAnnotation
Transcript
Other
Transcripts
Method View
Reads
Mutation
Assessor
AAK1 p.541_542QQ>Q 2 69741754 69741756 VMRCRCW_KIDNEY 37 In_Frame_Del Del TGT - rs55712143 uc002sfp.2 AAK1_uc010fdk.2... Hybrid_Cap...
ADAM17 2 9630245 9630245 VMRCRCW_KIDNEY 37 3'UTR Del T - uc002qzu.2 IAH1_uc010yiz.1... Hybrid_Cap...
ADAM28 8 24211994 24211997 VMRCRCW_KIDNEY 37 3'UTR Del CTAT - rs10610134 uc003xdy.2 ADAM28_uc011laa... Hybrid_Cap...
AKAP12 p.1531_1532insE 6 151674116 151674117 VMRCRCW_KIDNEY 37 In_Frame_Ins Ins - GAG rs34737819 uc011eep.1 AKAP12_uc003qoe... Hybrid_Cap...
AKAP9 p.E1364Q 7 91652265 91652265 VMRCRCW_KIDNEY 37 Missense_Mutation SNP G C uc003ulg.2 AKAP9_uc003ule.... Hybrid_Cap... view
ALPK2 p.1388_1389FF>F 18 56203253 56203255 VMRCRCW_KIDNEY 37 In_Frame_Del Del AAG - uc002lhj.3 ALPK2_uc002lhk.... Hybrid_Cap...
ALPK3 p.M1052I 15 85400519 85400519 VMRCRCW_KIDNEY 37 Missense_Mutation SNP G A uc002ble.2 Hybrid_Cap... view
ALS2 2 202587706 202587707 VMRCRCW_KIDNEY 37 Intron Ins - A rs3219165 uc002uyo.2 ALS2_uc002uyp.3... Hybrid_Cap...
ARFGEF1 8 68117066 68117066 VMRCRCW_KIDNEY 37 Intron Del C - uc003xxo.1 ARFGEF1_uc003xx... Hybrid_Cap...
BAP1 p.K580fs 3 52437305 52437305 VMRCRCW_KIDNEY 37 Frame_Shift_Del Del T - uc003ddx.2 BAP1_uc003ddw.2... Hybrid_Cap...
BCR 22 23631813 23631814 VMRCRCW_KIDNEY 37 Intron Ins - C rs66503844 uc002zww.2 BCR_uc002zwx.2_... Hybrid_Cap...
CABC1 1 227171585 227171585 VMRCRCW_KIDNEY 37 Intron Del T - uc001hqm.1 CABC1_uc001hqn.... Hybrid_Cap...
CEP110 p.L1321_splice 9 123912763 123912763 VMRCRCW_KIDNEY 37 Splice_Site_SNP SNP T G uc004bkx.1 CEP110_uc004bky... Hybrid_Cap... view
CLTCL1 p.V1201_splice 22 19189003 19189004 VMRCRCW_KIDNEY 37 Splice_Site_Ins Ins - C rs11386977 uc002zpb.2 CLTCL1_uc011agv... Hybrid_Cap...
CNTN5 p.A871P 11 100170119 100170119 VMRCRCW_KIDNEY 37 Missense_Mutation SNP G C uc001pga.2 CNTN5_uc001pfz.... Hybrid_Cap... view
CREB3L2 p.T100del 7 137612914 137612916 VMRCRCW_KIDNEY 37 In_Frame_Del Del TGG - uc003vtw.2 CREB3L2_uc003vt... Hybrid_Cap...
CSF1R 5 149433400 149433401 VMRCRCW_KIDNEY 37 3'UTR Ins - C rs66970099;rs78449650 uc003lrl.2 CSF1R_uc011dcd.... Hybrid_Cap...
CYP27B1 12 58156763 58156763 VMRCRCW_KIDNEY 37 3'UTR SNP T A uc001spz.1 CYP27B1_uc001sq... Hybrid_Cap... view
DAPK2 p.Y139H 15 64263660 64263660 VMRCRCW_KIDNEY 37 Missense_Mutation SNP A G uc002amr.2 DAPK2_uc010uim.... Hybrid_Cap... view
DGKB 7 14880917 14880917 VMRCRCW_KIDNEY 37 5'UTR SNP C T uc003ssz.2 DGKB_uc011jxt.1... Hybrid_Cap... view
DST p.S4818P 6 56354356 56354356 VMRCRCW_KIDNEY 37 Missense_Mutation SNP A G uc003pdf.2 DST_uc003pcz.3_... Hybrid_Cap... view
DYRK1A 21 38884966 38884967 VMRCRCW_KIDNEY 37 3'UTR Ins - T rs72430212 uc002ywk.2 DYRK1A_uc002ywi... Hybrid_Cap...
EDN1 6 12290729 12290729 VMRCRCW_KIDNEY 37 5'UTR Del A - uc003nae.3 EDN1_uc010jpb.2... Hybrid_Cap...
EIF4E 4 99808137 99808141 VMRCRCW_KIDNEY 37 Intron Del TTAAA - uc011ceb.1 EIF4E_uc011cea.... Hybrid_Cap...
ELK1 X 47500595 47500596 VMRCRCW_KIDNEY 37 Intron Ins - G uc004dik.3 ELK1_uc010nhv.2... Hybrid_Cap...
ELL 19 18632914 18632914 VMRCRCW_KIDNEY 37 5'UTR SNP A C uc002njh.2 ELL_uc010ebq.2_... Hybrid_Cap... view
EPHA6 3 97367230 97367231 VMRCRCW_KIDNEY 37 Intron Ins - A rs115253553 uc010how.1 EPHA6_uc003drs.... Hybrid_Cap...
ETV1 7 14028708 14028708 VMRCRCW_KIDNEY 37 5'UTR Del A - rs77190713 uc011jxq.1 ETV1_uc011jxn.1... Hybrid_Cap...
EXT1 8 118811807 118811807 VMRCRCW_KIDNEY 37 3'UTR Del T - uc003yok.1 Hybrid_Cap...
FAM118A 22 45736388 45736388 VMRCRCW_KIDNEY 37 3'UTR SNP C T uc003bfz.3 FAM118A_uc003bg... Hybrid_Cap... view
FANCC 9 97863893 97863893 VMRCRCW_KIDNEY 37 3'UTR SNP T C rs55687573 uc004avh.2 Hybrid_Cap... view
FGFR3 4 1809128 1809129 VMRCRCW_KIDNEY 37 3'UTR Del GT - uc003gdu.2 FGFR3_uc003gdr.... Hybrid_Cap...
FLI1 11 128638217 128638217 VMRCRCW_KIDNEY 37 Intron Del G - uc010sbu.1 FLI1_uc010sbt.1... Hybrid_Cap...
FN1 2 216244182 216244185 VMRCRCW_KIDNEY 37 Intron Del GTAC - uc002vfa.2 FN1_uc002vfb.2_... Hybrid_Cap...
GRIA3 X 122318386 122318387 VMRCRCW_KIDNEY 37 Splice_Site_Ins Ins - G rs66632982 uc004etq.3 GRIA3_uc004etr.... Hybrid_Cap...
GUCY2C 12 14827464 14827466 VMRCRCW_KIDNEY 37 Intron Del ATC - rs72525754;rs3083879 uc001rcd.2 GUCY2C_uc009zhz... Hybrid_Cap...
IGF1R 15 99192755 99192763 VMRCRCW_KIDNEY 37 5'UTR Del TTTTT... - uc002bul.2 IGF1R_uc010urq.... Hybrid_Cap...
IL1RN p.R29Q 2 113885278 113885278 VMRCRCW_KIDNEY 37 Missense_Mutation SNP G A uc002tiz.2 IL1RN_uc002tix.... Hybrid_Cap... view
ILK 11 6630029 6630029 VMRCRCW_KIDNEY 37 Intron Del C - uc001mee.2 ILK_uc001mef.2_... Hybrid_Cap...
INHBA 7 41729111 41729112 VMRCRCW_KIDNEY 37 3'UTR Ins - T rs116913029 uc003thq.2 INHBA_uc003thr.... Hybrid_Cap...
INHBA 7 41740067 41740068 VMRCRCW_KIDNEY 37 5'UTR Ins - T rs116230303 uc003thq.2 LOC285954_uc003... Hybrid_Cap...
ITPR2 p.R470_splice 12 26834804 26834805 VMRCRCW_KIDNEY 37 Splice_Site_Ins Ins - ACTC rs66696203;rs59199365 uc001rhg.2 Hybrid_Cap...
KLK7 19 51480672 51480675 VMRCRCW_KIDNEY 37 3'UTR Del GGTT - uc002puo.2 KLK7_uc002pup.2... Hybrid_Cap...
LCP1 p.136_137insN 13 46730655 46730656 VMRCRCW_KIDNEY 37 In_Frame_Ins Ins - ATT uc001vaz.3 LCP1_uc001vba.3... Hybrid_Cap...
MAML3 p.Q767_splice 4 140651585 140651587 VMRCRCW_KIDNEY 37 Splice_Site_Del Del CTG - uc003ihz.1 MGST2_uc010ioi.... Hybrid_Cap...
MAP3K1 p.T949del 5 56177849 56177851 VMRCRCW_KIDNEY 37 In_Frame_Del Del CAA - uc003jqw.3 Hybrid_Cap...
MAP3K14 p.R218_splice 17 43364293 43364294 VMRCRCW_KIDNEY 37 Splice_Site_Ins Ins - G rs66766023 uc002iiw.1 MAP3K14_uc010da... Hybrid_Cap...
MAP3K5 p.988_989insD 6 136913666 136913667 VMRCRCW_KIDNEY 37 In_Frame_Ins Ins - GTC uc003qhc.2 MAP3K5_uc011edj... Hybrid_Cap...
MAST2 p.S1225T 1 46499610 46499610 VMRCRCW_KIDNEY 37 Missense_Mutation SNP G C uc001cov.2 MAST2_uc001cow.... Hybrid_Cap... view
MFSD4 p.W224* 1 205550031 205550031 VMRCRCW_KIDNEY 37 Nonsense_Mutation SNP G A uc001hcv.3 MFSD4_uc010prk.... Hybrid_Cap... view
MKRN3 15 23810843 23810843 VMRCRCW_KIDNEY 37 5'UTR SNP C T uc001ywh.3 MKRN3_uc001ywi.... Hybrid_Cap... view
MLH1 3 37092174 37092176 VMRCRCW_KIDNEY 37 3'UTR Del TTC - uc003cgl.2 MLH1_uc011aye.1... Hybrid_Cap...
MMP1 p.I191fs 11 102667447 102667447 VMRCRCW_KIDNEY 37 Frame_Shift_Del Del A - uc001phi.2 MMP1_uc010ruv.1... Hybrid_Cap...
MSH3 p.PPA66del 5 79950742 79950750 VMRCRCW_KIDNEY 37 In_Frame_Del Del CCCCC... - rs60484572;rs1047489 uc003kgz.2 DHFR_uc011ctl.1... Hybrid_Cap...
MYO18B p.D1448N 22 26286750 26286750 VMRCRCW_KIDNEY 37 Missense_Mutation SNP G A uc003abz.1 MYO18B_uc003aca... Hybrid_Cap... view
NCAM1 11 112832307 112832308 VMRCRCW_KIDNEY 37 5'UTR Ins - A rs117108942 uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCAM1 11 112832340 112832340 VMRCRCW_KIDNEY 37 5'UTR Del C - uc009yyq.1 NCAM1_uc001pno.... Hybrid_Cap...
NCOA3 p.Q1276del 20 46279864 46279866 VMRCRCW_KIDNEY 37 In_Frame_Del Del CAA - rs1132443;rs28529067 uc002xtk.2 NCOA3_uc010ght.... Hybrid_Cap...
NEK3 p.K313_splice 13 52718050 52718051 VMRCRCW_KIDNEY 37 Splice_Site_Ins Ins - T rs72514762 uc001vgh.2 NEK3_uc001vgg.2... Hybrid_Cap...
NOTCH4 6 32170465 32170465 VMRCRCW_KIDNEY 37 Intron Del G - uc003obb.2 NOTCH4_uc003oba... Hybrid_Cap...
NPM1 5 170837734 170837734 VMRCRCW_KIDNEY 37 3'UTR Del T - uc011dex.1 NPM1_uc003mbi.2... Hybrid_Cap...
NPR1 1 153665919 153665920 VMRCRCW_KIDNEY 37 3'UTR Ins - C rs66682713 uc001fcs.3 NPR1_uc010pdz.1... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881820 50881821 VMRCRCW_KIDNEY 37 In_Frame_Ins Ins - AAC rs66783852;rs112359270 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
NR1H2 p.176_177insQ 19 50881822 50881823 VMRCRCW_KIDNEY 37 In_Frame_Ins Ins - CAG rs61751954;rs1052533 uc010enw.2 NR1H2_uc002prv.... Hybrid_Cap...
PAX3 2 223158653 223158653 VMRCRCW_KIDNEY 37 Intron Del T - rs112753212 uc002vmt.1 PAX3_uc002vmy.1... Hybrid_Cap...
PDE4DIP p.Q1665fs 1 144873963 144873963 VMRCRCW_KIDNEY 37 Frame_Shift_Del Del T - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PDE4DIP p.V486fs 1 144917828 144917828 VMRCRCW_KIDNEY 37 Frame_Shift_Del Del A - uc001elw.3 NBPF10_uc009wir... Hybrid_Cap...
PGR 11 100933598 100933599 VMRCRCW_KIDNEY 37 Intron Ins - AATGA rs35148438 uc001pgh.2 PGR_uc001pgg.2_... Hybrid_Cap...
PIK3C2G p.K1128fs 12 18691148 18691148 VMRCRCW_KIDNEY 37 Frame_Shift_Del Del A - uc010sib.1 PIK3C2G_uc001rd... Hybrid_Cap...
PIK3CD p.P682L 1 9781836 9781836 VMRCRCW_KIDNEY 37 Missense_Mutation SNP C T uc001aqe.3 PIK3CD_uc001aqb... Hybrid_Cap... view
PRKDC p.L1244fs 8 48805816 48805817 VMRCRCW_KIDNEY 37 Frame_Shift_Ins Ins - G rs67588121 uc003xqi.2 PRKDC_uc003xqj.... Hybrid_Cap...
PRKG2 p.F280V 4 82090827 82090827 VMRCRCW_KIDNEY 37 Missense_Mutation SNP A C uc003hmh.2 PRKG2_uc011cch.... Hybrid_Cap... view
PTPN22 p.P615L 1 114377582 114377582 VMRCRCW_KIDNEY 37 Missense_Mutation SNP G A uc001eds.2 PTPN22_uc009wgq... Hybrid_Cap... view
RANBP17 p.R662W 5 170610380 170610380 VMRCRCW_KIDNEY 37 Missense_Mutation SNP A T uc003mba.2 RANBP17_uc003mb... Hybrid_Cap... view
RBPJ 4 26431822 26431822 VMRCRCW_KIDNEY 37 Intron Del A - rs76214390 uc003grx.1 RBPJ_uc003gry.1... Hybrid_Cap...
RECQL4 p.R766fs 8 145738768 145738768 VMRCRCW_KIDNEY 37 Frame_Shift_Del Del G - uc003zdj.2 Hybrid_Cap...
RICTOR p.L974V 5 38952505 38952505 VMRCRCW_KIDNEY 37 Missense_Mutation SNP G C uc003jlo.2 RICTOR_uc003jlp... Hybrid_Cap... view
RIF1 p.E1143G 2 152319462 152319462 VMRCRCW_KIDNEY 37 Missense_Mutation SNP A G uc002txm.2 RIF1_uc002txl.2... Hybrid_Cap... view
SNX19 p.L632F 11 130780185 130780185 VMRCRCW_KIDNEY 37 Missense_Mutation SNP G A uc001qgk.3 SNX19_uc009zcw.... Hybrid_Cap... view
SP140 p.E426A 2 231134283 231134283 VMRCRCW_KIDNEY 37 Missense_Mutation SNP A C uc002vql.2 SP140_uc010zma.... Hybrid_Cap... view
STK10 p.R648W 5 171509377 171509377 VMRCRCW_KIDNEY 37 Missense_Mutation SNP G A uc003mbo.1 Hybrid_Cap... view
STK25 2 242435659 242435662 VMRCRCW_KIDNEY 37 Intron Del AAGG - rs3215138;rs75497042 uc002wbm.2 STK25_uc002wbk.... Hybrid_Cap...
STK31 7 23872024 23872025 VMRCRCW_KIDNEY 37 3'UTR Ins - TTTG rs66787534 uc003sws.3 STK31_uc003swt.... Hybrid_Cap...
TG p.A507T 8 133899136 133899136 VMRCRCW_KIDNEY 37 Missense_Mutation SNP G A uc003ytw.2 Hybrid_Cap... view
TGFBR2 p.A204fs 3 30713211 30713211 VMRCRCW_KIDNEY 37 Frame_Shift_Del Del C - uc003cen.2 TGFBR2_uc003ceo... Hybrid_Cap...
TLK1 2 171850178 171850179 VMRCRCW_KIDNEY 37 3'UTR Ins - AA rs71008739 uc002ugo.2 TLK1_uc002ugn.2... Hybrid_Cap...
TNRC6B p.Q1328del 22 40697177 40697179 VMRCRCW_KIDNEY 37 In_Frame_Del Del GCA - rs114291931 uc011aor.1 TNRC6B_uc003aym... Hybrid_Cap...
TP63 3 189507518 189507519 VMRCRCW_KIDNEY 37 Intron Ins - AGAG rs62702062;rs79714037 uc003fry.2 TP63_uc003frx.2... Hybrid_Cap...
TPO p.P70A 2 1437238 1437238 VMRCRCW_KIDNEY 37 Missense_Mutation SNP C G rs17855780 uc002qww.2 TPO_uc010ewj.2_... Hybrid_Cap... view
TTN p.D12499N 2 179486352 179486352 VMRCRCW_KIDNEY 37 Missense_Mutation SNP C T uc010zfg.1 TTN_uc010zfh.1_... Hybrid_Cap... view
VEGFC p.S419_splice 4 177605082 177605084 VMRCRCW_KIDNEY 37 Splice_Site_Del Del TCA - uc003ius.1 Hybrid_Cap...
VHL p.E160fs 3 10191487 10191488 VMRCRCW_KIDNEY 37 Frame_Shift_Del Del GC - rs5030818 uc003bvc.2 VHL_uc003bvd.2_... Hybrid_Cap...