An Error Occurred:

javax.el.ELException: /templates/headerNav.xhtml @39,76 view="#{register.nextPage}": Error reading 'nextPage' on type edu.mit.broad.jsf.RegisterBean_$$_javassist_29

+ Stack Trace

javax.faces.FacesException: javax.el.ELException: /templates/headerNav.xhtml @39,76 view="#{register.nextPage}": Error reading 'nextPage' on type edu.mit.broad.jsf.RegisterBean_$$_javassist_29
	at org.jboss.seam.ui.component.html.HtmlLink.getView(HtmlLink.java:1224)
	at org.jboss.seam.ui.component.UISeamCommandBase.getUrl(UISeamCommandBase.java:42)
	at org.jboss.seam.ui.renderkit.LinkRendererBase.doEncodeBegin(LinkRendererBase.java:26)
	at org.jboss.seam.ui.util.cdk.RendererBase.encodeBegin(RendererBase.java:79)
	at javax.faces.component.UIComponentBase.encodeBegin(UIComponentBase.java:785)
	at javax.faces.component.UIComponent.encodeAll(UIComponent.java:884)
	at javax.faces.render.Renderer.encodeChildren(Renderer.java:137)
	at javax.faces.component.UIComponentBase.encodeChildren(UIComponentBase.java:809)
	at javax.faces.component.UIComponent.encodeAll(UIComponent.java:886)
	at javax.faces.component.UIComponent.encodeAll(UIComponent.java:892)
	at javax.faces.component.UIComponent.encodeAll(UIComponent.java:892)
	at com.sun.facelets.FaceletViewHandler.renderView(FaceletViewHandler.java:578)
	at org.ajax4jsf.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:100)
	at org.ajax4jsf.application.AjaxViewHandler.renderView(AjaxViewHandler.java:176)
	at com.sun.faces.lifecycle.RenderResponsePhase.execute(RenderResponsePhase.java:106)
	at com.sun.faces.lifecycle.LifecycleImpl.phase(LifecycleImpl.java:251)
	at com.sun.faces.lifecycle.LifecycleImpl.render(LifecycleImpl.java:144)
	at javax.faces.webapp.FacesServlet.service(FacesServlet.java:245)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:646)
	at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:436)
	at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:374)
	at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:302)
	at org.tuckey.web.filters.urlrewrite.RewrittenUrl.doRewrite(RewrittenUrl.java:176)
	at org.tuckey.web.filters.urlrewrite.UrlRewriteFilter.doFilter(UrlRewriteFilter.java:728)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:83)
	at org.jboss.seam.web.IdentityFilter.doFilter(IdentityFilter.java:40)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:69)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:73)
	at org.jboss.seam.web.ExceptionFilter.doFilter(ExceptionFilter.java:64)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:69)
	at org.jboss.seam.web.RedirectFilter.doFilter(RedirectFilter.java:45)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:69)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:73)
	at org.ajax4jsf.webapp.BaseXMLFilter.doXmlFilter(BaseXMLFilter.java:178)
	at org.ajax4jsf.webapp.BaseFilter.handleRequest(BaseFilter.java:290)
	at org.ajax4jsf.webapp.BaseFilter.processUploadsAndHandleRequest(BaseFilter.java:388)
	at org.ajax4jsf.webapp.BaseFilter.doFilter(BaseFilter.java:515)
	at org.jboss.seam.web.Ajax4jsfFilter.doFilter(Ajax4jsfFilter.java:56)
	at edu.mit.broad.components.Ajax4jsfFilter.doFilter(Ajax4jsfFilter.java:31)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:69)
	at edu.mit.broad.logging.LoggingFilter.doFilter(LoggingFilter.java:28)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:69)
	at org.jboss.seam.web.LoggingFilter.doFilter(LoggingFilter.java:58)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:69)
	at edu.mit.broad.jsf.servlet.DownloadFilter.doFilter(DownloadFilter.java:364)
	at org.jboss.seam.servlet.SeamFilter$FilterChainImpl.doFilter(SeamFilter.java:69)
	at org.jboss.seam.servlet.SeamFilter.doFilter(SeamFilter.java:158)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
	at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:555)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298)
	at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:852)
	at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:588)
	at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:396)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:619)
Caused by: javax.el.ELException: /templates/headerNav.xhtml @39,76 view="#{register.nextPage}": Error reading 'nextPage' on type edu.mit.broad.jsf.RegisterBean_$$_javassist_29
	at com.sun.facelets.el.TagValueExpression.getValue(TagValueExpression.java:76)
	at org.jboss.seam.ui.component.html.HtmlLink.getView(HtmlLink.java:1222)
	... 65 more
Caused by: org.jboss.seam.InstantiationException: Could not instantiate Seam component: loaderConfigHome
	at org.jboss.seam.Component.newInstance(Component.java:2106)
	at org.jboss.seam.Component.getInstance(Component.java:1988)
	at org.jboss.seam.Component.getInstance(Component.java:1950)
	at org.jboss.seam.Component.getInstance(Component.java:1944)
	at org.jboss.seam.Component.getInstanceInAllNamespaces(Component.java:2311)
	at org.jboss.seam.Component.getValueToInject(Component.java:2263)
	at org.jboss.seam.Component.injectAttributes(Component.java:1703)
	at org.jboss.seam.Component.inject(Component.java:1521)
	at org.jboss.seam.core.BijectionInterceptor.aroundInvoke(BijectionInterceptor.java:61)
	at org.jboss.seam.intercept.SeamInvocationContext.proceed(SeamInvocationContext.java:68)
	at org.jboss.seam.core.ConversationInterceptor.aroundInvoke(ConversationInterceptor.java:65)
	at org.jboss.seam.intercept.SeamInvocationContext.proceed(SeamInvocationContext.java:68)
	at org.jboss.seam.core.MethodContextInterceptor.aroundInvoke(MethodContextInterceptor.java:44)
	at org.jboss.seam.intercept.SeamInvocationContext.proceed(SeamInvocationContext.java:68)
	at org.jboss.seam.intercept.RootInterceptor.invoke(RootInterceptor.java:107)
	at org.jboss.seam.intercept.JavaBeanInterceptor.interceptInvocation(JavaBeanInterceptor.java:185)
	at org.jboss.seam.intercept.JavaBeanInterceptor.invoke(JavaBeanInterceptor.java:103)
	at edu.mit.broad.jsf.UiBean_$$_javassist_31.getContextUrl(UiBean_$$_javassist_31.java)
	at edu.mit.broad.jsf.TermsOfAccessBean.isTermsOfAccessPresent(TermsOfAccessBean.java:140)
	at edu.mit.broad.jsf.TermsOfAccessBean.isTermsOfAccessRequired(TermsOfAccessBean.java:129)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.jboss.seam.util.Reflections.invoke(Reflections.java:22)
	at org.jboss.seam.intercept.RootInvocationContext.proceed(RootInvocationContext.java:31)
	at org.jboss.seam.intercept.SeamInvocationContext.proceed(SeamInvocationContext.java:56)
	at org.jboss.seam.transaction.RollbackInterceptor.aroundInvoke(RollbackInterceptor.java:28)
	at org.jboss.seam.intercept.SeamInvocationContext.proceed(SeamInvocationContext.java:68)
	at org.jboss.seam.core.BijectionInterceptor.aroundInvoke(BijectionInterceptor.java:77)
	at org.jboss.seam.intercept.SeamInvocationContext.proceed(SeamInvocationContext.java:68)
	at org.jboss.seam.core.MethodContextInterceptor.aroundInvoke(MethodContextInterceptor.java:44)
	at org.jboss.seam.intercept.SeamInvocationContext.proceed(SeamInvocationContext.java:68)
	at org.jboss.seam.core.SynchronizationInterceptor.aroundInvoke(SynchronizationInterceptor.java:32)
	at org.jboss.seam.intercept.SeamInvocationContext.proceed(SeamInvocationContext.java:68)
	at org.jboss.seam.intercept.RootInterceptor.invoke(RootInterceptor.java:107)
	at org.jboss.seam.intercept.JavaBeanInterceptor.interceptInvocation(JavaBeanInterceptor.java:185)
	at org.jboss.seam.intercept.JavaBeanInterceptor.invoke(JavaBeanInterceptor.java:103)
	at edu.mit.broad.jsf.TermsOfAccessBean_$$_javassist_27.isTermsOfAccessRequired(TermsOfAccessBean_$$_javassist_27.java)
	at edu.mit.broad.jsf.RegisterBean.getNextPage(RegisterBean.java:106)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.jboss.seam.util.Reflections.invoke(Reflections.java:22)
	at org.jboss.seam.intercept.RootInvocationContext.proceed(RootInvocationContext.java:31)
	at org.jboss.seam.intercept.SeamInvocationContext.proceed(SeamInvocationContext.java:56)
	at org.jboss.seam.transaction.RollbackInterceptor.aroundInvoke(RollbackInterceptor.java:28)
	at org.jboss.seam.intercept.SeamInvocationContext.proceed(SeamInvocationContext.java:68)
	at org.jboss.seam.core.BijectionInterceptor.aroundInvoke(BijectionInterceptor.java:77)
	at org.jboss.seam.intercept.SeamInvocationContext.proceed(SeamInvocationContext.java:68)
	at org.jboss.seam.core.ConversationInterceptor.aroundInvoke(ConversationInterceptor.java:65)
	at org.jboss.seam.intercept.SeamInvocationContext.proceed(SeamInvocationContext.java:68)
	at org.jboss.seam.core.MethodContextInterceptor.aroundInvoke(MethodContextInterceptor.java:44)
	at org.jboss.seam.intercept.SeamInvocationContext.proceed(SeamInvocationContext.java:68)
	at org.jboss.seam.core.SynchronizationInterceptor.aroundInvoke(SynchronizationInterceptor.java:32)
	at org.jboss.seam.intercept.SeamInvocationContext.proceed(SeamInvocationContext.java:68)
	at org.jboss.seam.intercept.RootInterceptor.invoke(RootInterceptor.java:107)
	at org.jboss.seam.intercept.JavaBeanInterceptor.interceptInvocation(JavaBeanInterceptor.java:185)
	at org.jboss.seam.intercept.JavaBeanInterceptor.invoke(JavaBeanInterceptor.java:103)
	at edu.mit.broad.jsf.RegisterBean_$$_javassist_29.getNextPage(RegisterBean_$$_javassist_29.java)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at javax.el.BeanELResolver.getValue(BeanELResolver.java:62)
	at javax.el.CompositeELResolver.getValue(CompositeELResolver.java:54)
	at com.sun.faces.el.FacesCompositeELResolver.getValue(FacesCompositeELResolver.java:64)
	at org.jboss.el.parser.AstPropertySuffix.getValue(AstPropertySuffix.java:53)
	at org.jboss.el.parser.AstValue.getValue(AstValue.java:67)
	at org.jboss.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:186)
	at com.sun.facelets.el.TagValueExpression.getValue(TagValueExpression.java:71)
	... 66 more
Caused by: java.lang.NullPointerException
	at javassist.util.proxy.RuntimeSupport$DefaultMethodHandler.invoke(RuntimeSupport.java:37)
	at edu.mit.broad.datamodel.LoaderConfigHome_$$_javassist_32.setEntityClass(LoaderConfigHome_$$_javassist_32.java)
	at edu.mit.broad.datamodel.PortalEntityHomeBase.<init>(PortalEntityHomeBase.java:59)
	at edu.mit.broad.datamodel.LoaderConfigHome.<init>(LoaderConfigHome.java:30)
	at edu.mit.broad.datamodel.LoaderConfigHome_$$_javassist_32.<init>(LoaderConfigHome_$$_javassist_32.java)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
	at java.lang.Class.newInstance0(Class.java:355)
	at java.lang.Class.newInstance(Class.java:308)
	at org.jboss.seam.Component.wrap(Component.java:1471)
	at org.jboss.seam.Component.instantiateJavaBean(Component.java:1409)
	at org.jboss.seam.Component.instantiate(Component.java:1326)
	at org.jboss.seam.Component.newInstance(Component.java:2084)
	... 137 more

+ Component Tree

<AjaxViewRoot id="_viewRoot" immediate="false" locale="en_US" renderKitId="HTML_BASIC" renderRegionOnly="false" rendered="true" selfRendered="false" submitted="false" transient="false" viewId="/pages/data/mutationTagcloud.xhtml">
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd" >
<html xmlns="http://www.w3.org/1999/xhtml">
<head profile="http://www.w3.org/2005/10/profile"> <meta http-equiv="X-UA-Compatible" content="IE=EmulateIE8"/> <meta name="robots" content="noindex, nofollow, noarchive, nosnippet"/> <meta http-equiv="Content-Type" content="text/html; charset=utf-8"/> <title>
<HtmlOutputText escape="true" id="j_id3" rendered="true" transient="false" value="Broad-Novartis Cancer Cell Line Encyclopedia"/>
</title>
<Stylesheet filtered="false" id="j_id5" inline="false" path="/brandable/css/jquery.dataTables.css" rendered="true" transient="false"/>
<Stylesheet filtered="false" id="j_id6" inline="false" path="/brandable/css/jquery-ui.css" rendered="true" transient="false"/>
<Stylesheet filtered="false" id="j_id7" inline="false" path="/brandable/css/portal_style.css" rendered="true" transient="false"/>
<Stylesheet filtered="false" id="j_id8" inline="false" path="/brandable/css/portal_custom.css" rendered="true" transient="false"/>
<Stylesheet filtered="false" id="j_id9" inline="false" path="/brandable/css/component.css" rendered="true" transient="false"/>
<Stylesheet filtered="false" id="j_id10" inline="false" path="/brandable/css/component_custom.css" rendered="true" transient="false"/>
<link rel="shortcut icon" href="#{facesContext.externalContext.requestContextPath}/brandable/images/favicon.ico" type="image/ico"/> <link rel="icon" href="#{facesContext.externalContext.requestContextPath}/brandable/images/favicon.ico" type="image/png"/> <script src="#{facesContext.externalContext.requestContextPath}/js/prototypeLoader.js" type="text/javascript" charset="utf-8"/> <script type="text/javascript" charset="utf-8">loadPrototype("#{facesContext.externalContext.requestContextPath}/js/prototype.js");</script>
<script src="#{facesContext.externalContext.requestContextPath}/js/utilities.js" type="text/javascript" charset="utf-8"/>
</head>
<body> <div id="BG">
<div id="Header" style="margin-top: 0px;">
<HtmlLink action=" disabled="false" id="HeaderLeft" immediate="false" includePageParams="true" propagation="none" rendered="true" transient="false" view="/pages/home.xhtml">
<div id="HeaderLeftText"> <b>
<HtmlOutputText escape="false" id="j_id17" rendered="false" transient="false" value="Broad-Novartis Cancer Cell Line Encyclopedia"/>
</b> </div>
</HtmlLink>
<div id="HeaderRight">
<HtmlDiv id="logIn" rendered="true" transient="false">
<HtmlForm enctype="application/x-www-form-urlencoded" id="j_id20" prependId="true" rendered="true" submitted="false" transient="false">
<table cellpadding="3" cellspacing="0" border="0"> <tr> <td align="right" style="white-space:nowrap;">
<HtmlOutputLabel escape="true" id="j_id22" rendered="true" transient="false" value="Username "/>
<HtmlInputText disabled="false" id="j_id23" immediate="false" label="Username" localValueSet="false" maxlength="25" readonly="false" rendered="true" required="true" size="8" style="font-family:Arial;" styleClass="logIn" transient="false" valid="true"/>
<br/>
<HtmlOutputLabel escape="true" id="j_id25" rendered="true" transient="false" value="Password "/>
<HtmlInputSecret disabled="false" id="j_id26" immediate="false" label="Password" localValueSet="false" maxlength="25" readonly="false" redisplay="false" rendered="true" required="true" size="8" style="font-family:Arial;" styleClass="logIn" transient="false" valid="true"/>
</td> <td>
<HtmlCommandButton action="#{identity.login}" actionExpression="#{identity.login}" disabled="false" id="j_id28" image="/brandable/images/sign_in.gif" immediate="false" readonly="false" rendered="true" transient="false" type="submit"/>
<br/>
<HtmlLink action="/pages/forgotPassword.xhtml" actionExpression="/pages/forgotPassword.xhtml" disabled="false" id="forgotButton" immediate="false" includePageParams="true" propagation="none" rendered="true" style="line-height:12px;font-size: 11px;" transient="false">
Forgot<br/>Password?
</HtmlLink>
</td> </tr> <tr> <td colspan="2" class="regInfo">
<HtmlLink action=" disabled="false" id="j_id32" immediate="false" includePageParams="true" propagation="default" rendered="true" style="font-size: 11px;" transient="false" value="Register" view="/pages-toa/termsOfAccess.xhtml"/>
   
<HtmlLink action=" disabled="false" id="j_id34" immediate="false" includePageParams="true" propagation="default" rendered="true" style="font-size: 11px;" transient="false" value="Why Register?" view="/pages/whyregister.xhtml"/>
<a href="#"/></td> </tr> </table>
</HtmlForm>
</HtmlDiv>
<HtmlDiv id="logOut" rendered="false" transient="false">
<div id="userName">
<HtmlOutputText escape="true" id="j_id37" rendered="true" transient="false"/>
</div> <div id="signOut">
<HtmlLink action="#{identity.logout}" actionExpression="#{identity.logout}" disabled="false" id="j_id39" immediate="false" includePageParams="true" propagation="none" rendered="true" transient="false"/>
</div>
<HtmlAjaxRegion id="pollingRegion" immediate="false" renderRegionOnly="false" rendered="true" selfRendered="false" submitted="false" transient="false">
<HtmlForm enctype="application/x-www-form-urlencoded" id="j_id41" prependId="true" rendered="true" submitted="false" transient="false">
<AjaxPoll ajaxSingle="false" bypassUpdates="false" enabled="false" eventsQueue="myShelfPoll" id="poll" ignoreDupResponses="true" immediate="true" interval="4000" limitToList="false" rendered="true" requestDelay="-2147483648" submitted="false" timeout="-2147483648" transient="false"/>
</HtmlForm>
</HtmlAjaxRegion>
<HtmlDiv id="myShelfDataWrap" rendered="true" transient="false">
<div id="myShelfData">
<HtmlLink action="/pages/myShelf.xhtml" actionExpression="/pages/myShelf.xhtml" disabled="false" id="myShelfDataLink" immediate="false" includePageParams="true" propagation="begin" rendered="true" styleClass="myShelfData" transient="false"/>
<div id="#{(activeAnalysesForUserOnUserShelf.size()>0) ? 'myShelfStatusRun' : 'myShelfStatusComplete'}"> <div id="myShelfStatus1">#{(activeAnalysesForUserOnUserShelf.size()>0) ? activeAnalysesForUserOnUserShelf.size() : '  '}</div> <div id="myShelfStatus2">#{(analysesForUserOnUserShelf.size()>0) ? analysesForUserOnUserShelf.size() : '  '}</div> </div> </div>
</HtmlDiv>
</HtmlDiv>
</div> </div> <div id="Navigation"> <div id="History"> <div id="HistoryText"> </div> </div> <div id="spacer"> </div>
<div id="SubMenuContainer"> <div id="DataSubMenu" onmouseover="changeText("data","BROWSE▼"); showdiv("DataSubMenu"); hidediv("HelpSubMenu")" onmouseout="changeText("data","BROWSE▲"); hidediv("DataSubMenu")"> <div>
<HtmlLink action=" disabled="false" id="download" immediate="false" includePageParams="true" propagation="begin" rendered="true" styleClass="SubCell" transient="false" value="DATA" view="/pages/data/browseData.xhtml"/>
</div> <div>
<HtmlPanelGroup id="j_id47" rendered="false" transient="false">
<HtmlLink action=" disabled="false" id="projects" immediate="false" includePageParams="true" propagation="none" rendered="true" styleClass="SubCell" transient="false" value="PROJECTS" view="/pages/projects/browseProjects.xhtml"/>
</HtmlPanelGroup>
</div> <div>
<HtmlLink action="#{browseSamplesBean.checkSkipFirstStep()}" actionExpression="#{browseSamplesBean.checkSkipFirstStep()}" disabled="false" id="samples" immediate="false" includePageParams="true" propagation="begin" rendered="true" styleClass="SubCell" transient="false" value="CELL LINES" view="/pages/data/browseSamples.xhtml"/>
</div> <div>
<HtmlLink action=" disabled="false" id="j_id50" immediate="false" includePageParams="true" propagation="default" rendered="true" styleClass="SubCell" transient="false" value="MUTATIONS" view="/pages/data/mutationTagcloud.xhtml"/>
</div> <div>
<HtmlPanelGroup id="j_id52" rendered="false" transient="false">
<HtmlLink action=" disabled="false" id="videos" immediate="false" includePageParams="true" propagation="begin" rendered="true" styleClass="SubCell" transient="false" value="VIDEOS" view="/pages/videos/browseVideos.xhtml"/>
</HtmlPanelGroup>
</div> <div>
<HtmlLink action=" disabled="false" id="tcgaData" immediate="false" includePageParams="true" propagation="begin" rendered="false" styleClass="SubCell" transient="false" value="TCGA DATA" view="/pages/tap/browseTcgaData.xhtml"/>
</div> </div>
<HtmlOutputText escape="true" id="j_id55" rendered="true" transient="false">
<div id="SubMenuSpacer" onmouseover="changeText("help","HELP▼"); showdiv("SubMenuSpacer"); hidediv("DataSubMenu")" onmouseout="changeText("help","HELP▲"); hidediv("SubMenuSpacer")"> <div id="analyses">
<HtmlLink action=" disabled="false" id="j_id57" immediate="false" includePageParams="true" propagation="default" rendered="true" styleClass="SubCell" transient="false" view="/pages/data/browseAnalyses.xhtml">
<UIParameter id="j_id58" name="linkDetail" rendered="true" transient="false" value="index.html"/>
docs
</HtmlLink>
</div> </div>
</HtmlOutputText>
<div id="HelpSubMenu" onmouseover="changeText("help","HELP▼"); showdiv("HelpSubMenu"); hidediv("DataSubMenu")" onmouseout="changeText("help","HELP▲"); hidediv("HelpSubMenu")"> <div id="current">
<HtmlLink action="#{serverBean.resetDocumentationURL}" actionExpression="#{serverBean.resetDocumentationURL}" disabled="false" id="j_id62" immediate="false" includePageParams="true" propagation="default" rendered="true" styleClass="SubCell" transient="false" view="/pages/support/documents.xhtml">
<UIParameter id="j_id63" name="linkDetail" rendered="true" transient="false" value="index.html"/>
DOCUMENTS
</HtmlLink>
</div> <div id="current">
<HtmlLink action=" disabled="false" id="j_id66" immediate="false" includePageParams="true" propagation="default" rendered="true" styleClass="SubCell" transient="false" value="CONTACT US" view="/pages/support/esupport.xhtml"/>
</div> </div> </div> <div id="MainMenuContainer"> <div class="MainMenu">
<HtmlLink action=" disabled="false" id="home" immediate="false" includePageParams="true" propagation="none" rendered="true" styleClass="MainCell" transient="false" value="HOME" view="/pages/home.xhtml"/>
</div>
<ComponentRef id="j_id69" rendered="true" transient="false">
<div id="dataDiv" class="MainMenu" onmouseover="changeText("data","BROWSE▼"); showdiv("DataSubMenu"); hidediv("HelpSubMenu")" onmouseout="changeText("data","BROWSE▲"); hidediv("DataSubMenu")"><a href="#" id="data" class="#{(uiBean.tabOn('browseData')) or (uiBean.tabOn('browseSamples')) ?'MainCellOn':'MainCell'}">BROWSE▲</a></div>
</ComponentRef>
<div class="MainMenu">
<HtmlLink action=" disabled="false" id="analyses" immediate="false" includePageParams="true" propagation="none" rendered="true" styleClass="MainCell" transient="false" value="ANALYSIS TOOLS" view="/pages/data/browseAnalyses.xhtml"/>
</div> <div id="helpDiv" class="MainMenu" onmouseover="changeText("help","HELP▼"); showdiv("HelpSubMenu"); hidediv("DataSubMenu")" onmouseout="changeText("help","HELP▲"); hidediv("HelpSubMenu")"><a href="#" id="help" class="#{uiBean.tabOn('support')?'MainCellOn':'MainCell'}">HELP▲</a></div> <div class="MainMenu">
<HtmlLink action=" disabled="false" id="resources" immediate="false" includePageParams="true" propagation="none" rendered="false" styleClass="MainCell" transient="false" value="RESOURCES" view="/pages/resources.xhtml"/>
</div> <div class="MainMenu">
<HtmlLink action=" disabled="false" id="about" immediate="false" includePageParams="true" propagation="none" rendered="true" styleClass="MainCell" transient="false" value="ABOUT" view="/pages/about.xhtml"/>
</div> <div class="MainMenu">
<HtmlPanelGroup id="j_id75" rendered="false" transient="false">
<HtmlLink action=" disabled="false" id="curator" immediate="false" includePageParams="true" propagation="none" rendered="true" styleClass="MainCell" transient="false" value="CURATOR" view="/pages/curator/home.xhtml"/>
</HtmlPanelGroup>
</div> <div class="MainMenu">
<HtmlPanelGroup id="j_id77" rendered="false" transient="false">
<HtmlLink action=" disabled="false" id="admin" immediate="false" includePageParams="true" propagation="none" rendered="true" styleClass="MainCell" transient="false" value="ADMIN" view="/pages/admin/home.xhtml"/>
</HtmlPanelGroup>
</div> </div>
<div id="SimpleSearch">
<HtmlForm enctype="application/x-www-form-urlencoded" id="j_id80" prependId="true" rendered="true" submitted="false" transient="false">
<HtmlOutputText escape="true" id="j_id81" rendered="true" transient="false">
<HtmlCommandButton action="#{searchAction.search}" actionExpression="#{searchAction.search}" disabled="false" id="j_id82" image="/brandable/images/searchBtn.gif" immediate="false" readonly="false" rendered="true" transient="false" type="submit"/>
<HtmlInputText disabled="false" id="searchText" immediate="false" localValueSet="false" maxlength="-2147483648" readonly="false" rendered="true" required="false" size="-2147483648" transient="false" valid="true"/>
</HtmlOutputText>
</HtmlForm>
</div> </div>
<HtmlDiv id="j_id84" rendered="true" style="padding-left:15px;" styleClass="Warning" transient="false">
 Sorry. Only registered users have full access to the data or functions on this page.
<HtmlLink action=" disabled="false" id="j_id86" immediate="false" includePageParams="true" propagation="default" rendered="true" transient="false" value="Terms of Access" view="/pages-toa/termsOfAccess.xhtml"/>
  
<HtmlLink action=" disabled="false" id="j_id88" immediate="false" includePageParams="true" propagation="default" rendered="true" transient="false" value="Register" view="/pages/register.xhtml"/>
</HtmlDiv>
<HtmlDiv id="globalMessages" rendered="true" transient="false">
<HtmlMessages errorStyle="font-weight:bold; color:#880000;" globalOnly="true" id="j_id89" layout="table" rendered="true" showDetail="false" showSummary="true" styleClass="Warning" tooltip="false" transient="false"/>
</HtmlDiv>
<div id="Content"> <div id="ContentTop"> <table width="100%" border="0" cellpadding="0" cellspacing="0"> <tr> <td width="40px" class="ContentTopLeft"/> <td class="ContentTopCenter">
<table width="100%" border="0" cellpadding="0" cellspacing="0"> <tr> <td class="ContentTopLeft"/> <td class="ContentTopCenter"> <h1>Most Frequently Mutated Genes</h1> <div id="pageInfoHidden"> <h4><a href="#" class="info"><b onclick="togglePageInfo("pageInfoShown","pageInfoHidden", "inline")">PAGE INFO▲</b></a></h4> </div> <div id="pageInfoShown" style="display: none;"> <h4><a href="#" class="info"><b onclick="togglePageInfo("pageInfoHidden","pageInfoShown", "inline")">PAGE INFO▼</b></a></h4> <p>
<HtmlOutputText escape="false" id="j_id92" rendered="true" styleClass="pageInfo" transient="false" value="The tag cloud shows the most significantly mutated genes loaded in the portal. The more isignificantly mutated a gene is, the larger its text is represented. The colors indicate the most common type of mutation with the color codes shown at the bottom of the cloud. Click on any gene name to see a detailed report on the exact mutations that were recorded. To view mutation details"/>
</p> </div>
<HtmlForm enctype="application/x-www-form-urlencoded" id="j_id94" prependId="true" rendered="true" submitted="false" transient="false">
<p>Search for other genes:  
<HtmlInputText disabled="false" id="j_id96" immediate="false" localValueSet="false" maxlength="-2147483648" readonly="false" rendered="true" required="false" size="-2147483648" transient="false" valid="true"/>
<HtmlCommandButton action="#{searchAction.searchGenesOnly}" actionExpression="#{searchAction.searchGenesOnly}" disabled="false" id="j_id97" immediate="false" readonly="false" rendered="true" transient="false" type="submit" value="search"/>
</p>
</HtmlForm>
</td> <td class="ContentTopRight"/> </tr> </table>
</td> <td width="40px" class="ContentTopRight"/> </tr> </table> </div> <div id="ContentMiddle"> <table width="100%" border="0" cellpadding="0" cellspacing="0"> <tr> <td width="16px" style="width: 16px !important;" class="ContentMiddleLeft">
<HtmlGraphicImage height="0px" id="j_id101" ismap="false" rendered="true" style="border-style:none;" transient="false" url="/brandable/images/contentBottomCenter.gif" value="/brandable/images/contentBottomCenter.gif" width="16px"/>
</td> <td bgcolor="#fff">
<HtmlForm enctype="application/x-www-form-urlencoded" id="mutationCloudForm" prependId="true" rendered="true" submitted="false" transient="false">
<table width="100%" border="0" cellpadding="0" cellspacing="0"> <tr> <td class="ContentMiddleLeft"/> <td class="ContentMiddleCenter"> <p/> <p id="noindent">
<HtmlAjaxRepeat componentState="org.ajax4jsf.component.SequenceDataAdaptor$1@68f414" first="0" id="j_id104" rendered="true" rowIndex="0" rows="0" transient="false" var="feature">
<div class="tagcloudItem">
<HtmlCommandLink action="#{mutationTagcloud.viewMutationDetail}" actionExpression="#{mutationTagcloud.viewMutationDetail}" disabled="false" id="j_id106" immediate="false" rendered="false" styleClass="" title="View mutation details page" transient="false">
<UIParameter id="j_id107" name="geneSymbol" rendered="true" transient="false"/>
</HtmlCommandLink>
<HtmlCommandLink action="#{mutationTagcloud.viewMutationDetail}" actionExpression="#{mutationTagcloud.viewMutationDetail}" disabled="false" id="j_id108" immediate="false" rendered="false" style="" title="View mutation details page" transient="false">
<UIParameter id="j_id109" name="geneSymbol" rendered="true" transient="false"/>
</HtmlCommandLink>
<HtmlCommandLink disabled="false" id="j_id110" immediate="false" onclick="displayLoginRequired();" rendered="true" styleClass=" " title="View mutation details page" transient="false"/>
</div>   
</HtmlAjaxRepeat>
</p> </td> </tr> </table>
</HtmlForm>
<br/><br/> <p>
<HtmlOutputText escape="true" id="j_id114" rendered="false" transient="false">
<b>Predominant mutation type color key:</b>  
<HtmlAjaxRepeat componentState="org.ajax4jsf.component.SequenceDataAdaptor$1@351bbd33" first="0" id="j_id116" rendered="true" rowIndex="0" rows="0" transient="false" var="category">
<HtmlOutputText escape="true" id="j_id117" rendered="true" styleClass="" transient="false"/>
 
</HtmlAjaxRepeat>
</HtmlOutputText>
<HtmlOutputText escape="false" id="j_id119" rendered="true" transient="false" value="Purple color represents putative tumor suppressor genes and green represents putative oncogenes, based on the ratios of damaging mutations versus potentially activating mutations."/>
</p>
</td> <td width="16px" style="width: 16px !important;" class="ContentMiddleRight">
<HtmlGraphicImage height="0px" id="j_id122" ismap="false" rendered="true" style="border-style:none;" transient="false" url="/brandable/images/contentBottomCenter.gif" value="/brandable/images/contentBottomCenter.gif" width="0px"/>
</td> </tr> </table> </div> <div id="ContentBottom"> <table width="100%" border="0" cellpadding="0" cellspacing="0"> <tr> <td width="40px" height="62px" class="ContentBottomLeft"/> <td class="ContentBottomCenter">
<HtmlGraphicImage height="0px" id="j_id124" ismap="false" rendered="true" style="border-style:none;" transient="false" url="/brandable/images/contentBottomCenter.gif" value="/brandable/images/contentBottomCenter.gif" width="0px"/>
</td> <td width="40px" height="62px" class="ContentBottomRight"> </td> </tr> </table> </div> </div> <div id="Footer"> <center><br/>
<HtmlOutputText escape="false" id="j_id126" rendered="true" transient="false" value="©2013 The Broad Institute"/>
</center> </div> </div> </body>
</html>
</AjaxViewRoot>

+ Scoped Variables

Request Parameters
NameValue
cid56461
Request Attributes
NameValue
ajaxContextorg.ajax4jsf.context.AjaxContextImpl@2799057e
browseTcgaDataBeanedu.mit.broad.jsf.tap.BrowseTcgaDataBean@2f37a781
documentationManageredu.mit.broad.util.DocumentationManager@6ed61e5e
geneAnalysisActionedu.mit.broad.jsf.GeneAnalysisAction@2fd92e7e
loggingContextEventListeneredu.mit.broad.logging.LoggingContextEventListener@5b7b6abc
loginBeanedu.mit.broad.jsf.LoginBean@39c8b90
msgcom.sun.facelets.tag.jsf.core.LoadBundleHandler$ResourceBundleMap@1a8e9cca
pageInfoBeanedu.mit.broad.jsf.PageInfoBean@8d79f65
serverBeanedu.mit.broad.jsf.admin.ServerBean@421a46c
uiBeanedu.mit.broad.jsf.UiBean@3cb1b092
Session Attributes
NameValue
breadcrumbsedu.mit.broad.seam.BreadCrumbBean@35bf605f
registeredu.mit.broad.jsf.RegisterBean@2750188a
termsOfAccessBeanedu.mit.broad.jsf.TermsOfAccessBean@5db14df5
Application Attributes
NameValue
brandcclp
dataSetParsingServiceedu.mit.broad.parsing.DataSetParsingService@7a5f00a
downloadFilteredu.mit.broad.jsf.servlet.DownloadFilter@4e11488a
envedu.mit.broad.config.PortalEnvironment@1f063183
filePropertiesManageredu.mit.broad.util.FilePropertiesManager@119a25ed
fileSystemUtiledu.mit.broad.util.FileSystemUtil@52420ad
footeredu.mit.broad.datamodel.admin.ProjectInfoItem@aa14407
fundingedu.mit.broad.datamodel.admin.ProjectInfoItem@666f4c91
loggingFilteredu.mit.broad.logging.LoggingFilter@27b513b7
messageProvideredu.mit.broad.jsf.MessageProvider@793b06c8
portalBuildedu.mit.broad.config.PortalBuildProperties@5f2cb0a9
portalDatabaseorg.jboss.seam.persistence.EntityManagerFactory@2e379b9
projectInfoItemedu.mit.broad.datamodel.admin.ProjectInfoItem@16238a64
propertiesManageredu.mit.broad.util.PropertiesManager@1e26cd72
rssFeedReaderActionedu.mit.broad.jsf.RssFeedReaderAction@5a60ab84
uiHelperedu.mit.broad.seam.SeamUIHelper@11ea3496
Apr 24, 2017 5:01:10 PM - Generated by Facelets