Nucleotide Global Alignment
Description
- Query:
- TRCN0000465309
- Subject:
- XM_006538374.1
- Aligned Length:
- 6012
- Identities:
- 1157
- Gaps:
- 4707
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGCTTGCTAGGGTCCGGCTCTGGGCACCGAAGGACCTTTCCCTCTCAGGATGGCCAGGGTGGCATTCCAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTGGAGCAAAGCGAACAGCTGTGACCTTCCTTTAAAAATGAAGAAAGAGGCAGAAAGCAGCCCTGCTCGTTTTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTATCCCCACCCCCACCCCCGGACACATCGTGCTGCCTGGACGGCGCTTGGCTGACCCTAGAGGGAGGAGCAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGGGTGCTGGGGCGGGGTCGCCCAGCCACCGGGCGGGGACTGCCCCACTCACGCGGAACGCCCCCAGCCAGGCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CACGCGCTCCCATTCAAAGCAGCAGGGCTGCAAGGCCGCTGCAGTGACGCGCCCACCCGGCCCTGTGCTGCGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCCAGCCTGGGGTCCGCAGTTATCGCTCCACAACTCCTCCAGGACCATGGCAAGGCTGGTGACGCGTAACCGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCCGGGTTCCTGGCTCGCCTCATCGGTGGCATCTGGTGCCTCCTCTGTGTCGCAGGACAGAGCTGCTCTGCTCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCAGAGGGATGTTCACTTGGCATTTCTGGCCTGCTGGCTGTCCTTCCCACACCCACCCACCACCACTGACCGAG 592
Query 1 ----------------------------------------------------------ATGGAATGCTG----C 12
|.|| |||| |
Sbjct 593 GAAGCAGAGTGGAAAATCAAAATCCAACCCTCAAAGAAGTATGTGGAGACCAAAGCCAAGGG---GCTGTTTTC 663
Query 13 CGTCGGGCAACTCCTGGCACACTGCT------------CCT-------------CTTTCTGGCTTTCCTG---- 57
|...|||.|..| ||||||.| ||| ||.||||.| |||.||
Sbjct 664 CTGAGGGAATTT------ACACTGATTCGAAGAGAGAGCCTTCATGAAGAGTTCCTGTCTGAC-TTCTTGAATA 730
Query 58 ---------CT-----CCTGAGTTCCAGGACCGCACGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGG 117
|| ||.||||||||||||.||||||||.|||||.|||||.||.|||||.||||||||||||
Sbjct 731 GTCACAAAACTGAAGACCCGAGTTCCAGGACTGCACGCTCAGAGGAAGACCGTGAAGGCCTCTGGGATGCCTGG 804
Query 118 GGCCCATGGAGTGAATGCTCACGCACCTGCGGGGGAGGGGCCTCCTACTCTCTGAGGCGCTGCCTGAGCAGCAA 191
|||||.|||||.||.||.||..|.|||||.||.||.||.||||||||.||.|||||.|||||||||||||||||
Sbjct 805 GGCCCTTGGAGCGAGTGTTCCAGAACCTGTGGTGGGGGTGCCTCCTATTCCCTGAGACGCTGCCTGAGCAGCAA 878
Query 192 GAGCTGTGAAGGAAGAAATATCCGATACAGAACATGCAGTAATGTGGACTGCCCACCAGAAGCAGGTGATTTCC 265
||||||||||||.||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GAGCTGTGAAGGGAGAAATATTCGATATAGAACATGCAGTAATGTGGACTGCCCACCAGAAGCAGGTGATTTCC 952
Query 266 GAGCTCAGCAATGCTCAGCTCATAATGATGTCAAGCACCATGGCCAGTTTTATGAATGGCTTCCTGTGTCTAAT 339
|||||||.||.||.||.||||||||.||.||||||.|||||||.|||.|||||||||||||||||||.||||||
Sbjct 953 GAGCTCAACAGTGTTCTGCTCATAACGACGTCAAGTACCATGGACAGCTTTATGAATGGCTTCCTGTATCTAAT 1026
Query 340 GACCCTGACAACCCATGTTCACTCAAGTGCCAAGCCAAAGGAACAACCCTGGTTGTTGAACTAGCACCTAAGGT 413
|||||.|||||.|||||.|||||||||||||||||.||||||||.|.|||||||||.|||||||||||.|||||
Sbjct 1027 GACCCCGACAATCCATGCTCACTCAAGTGCCAAGCAAAAGGAACCAGCCTGGTTGTGGAACTAGCACCGAAGGT 1100
Query 414 CTTAGATGGTACGCGTTGCTATACAGAATCTTTGGATATGTGCATCAGTGGTTTATGCCAAATTGTTGGCTGCG 487
|||||||||||||||.||||||||||||||..||||||||||||||||.||..|||||||||||||||||||.|
Sbjct 1101 CTTAGATGGTACGCGATGCTATACAGAATCACTGGATATGTGCATCAGCGGCCTATGCCAAATTGTTGGCTGTG 1174
Query 488 ATCACCAGCTGGGAAGCACCGTCAAGGAAGATAACTGTGGGGTCTGCAACGGAGATGGGTCCACCTGCCGGCTG 561
|||||||||||||.|||||.|||||.||.|||||||||||.||.||||||||||||||.||.||.|||||||||
Sbjct 1175 ATCACCAGCTGGGGAGCACTGTCAAAGAGGATAACTGTGGAGTGTGCAACGGAGATGGCTCAACGTGCCGGCTG 1248
Query 562 GTCCGAGGGCAGTATAAATCCCAGCTCTCCGCAACCAAATCGGATGATACTGTGGTTGCAATTCCCTATGGAAG 635
||||||||||||||||||||.||||||||.||||..|||||||||||.||.|||||.||.|||||.||.||.||
Sbjct 1249 GTCCGAGGGCAGTATAAATCTCAGCTCTCTGCAAGTAAATCGGATGACACCGTGGTCGCCATTCCTTACGGCAG 1322
Query 636 TAGACATATTCGCCTTGTCTTAAAAGGTCCTGATCACTTATATCTGGAAACCAAAACCCTCCAGGGGACTAAAG 709
.|||||.||.|||||||||||||||||.||.|||||.||.||||||||.|||||.|||||||||||.|||||||
Sbjct 1323 CAGACACATCCGCCTTGTCTTAAAAGGGCCAGATCATTTGTATCTGGAGACCAAGACCCTCCAGGGAACTAAAG 1396
Query 710 GTGAAAACAGTCTCAGCTCCACAGGAACTTTCCTTGTGGACAATTCTAGTGTGGACTTCCAGAAATTTCCAGAC 783
|||||||.|||||.|||||.|||||.|.||||||||||||||||||||..|||||||||||||||.||||||||
Sbjct 1397 GTGAAAATAGTCTGAGCTCTACAGGCATTTTCCTTGTGGACAATTCTACAGTGGACTTCCAGAAACTTCCAGAC 1470
Query 784 AAAGAGATACTGAGAATGGCTGGACCACTCACAGCAGATTTCATTGTCAAGATTCGTAACTCGGGCTCCGCTGA 857
||||||||||||||.|||.||||.|||||.||||||||||||||..|||||||.|.|.|||.|||..|.||.||
Sbjct 1471 AAAGAGATACTGAGGATGACTGGGCCACTGACAGCAGATTTCATCATCAAGATCCATGACTTGGGACCTGCAGA 1544
Query 858 CAGTACAGTCCAGTTCATCTTCTATCAACCCATCATCCACCGATGGAGGGAGACGGATTTCTTTCCTTGCTCAG 931
|||.||.|||||||||||||||||.||.|||||||||||||||||||||||.||.||.||||||||||||||||
Sbjct 1545 CAGCACCGTCCAGTTCATCTTCTACCAGCCCATCATCCACCGATGGAGGGAAACAGACTTCTTTCCTTGCTCAG 1618
Query 932 CAACCTGTGGAGGAGGTTATCAGCTGACATCGGCTGAGTGCTACGATCTGAGGAGCAACCGTGTGGTTGCTGAC 1005
||||.|||||.|||||.||.||||||||.||.||.||||||||.|||||..||||.|||||||||||.||.|||
Sbjct 1619 CAACGTGTGGTGGAGGCTACCAGCTGACGTCTGCCGAGTGCTATGATCTACGGAGTAACCGTGTGGTGGCCGAC 1692
Query 1006 CAATACTGTCACTATTACCCAGAGAACATCAAACCCAAACCCAAGCTTCAGGAGTGCAACTTGGATCCTTGTCC 1079
||.|||||||||||.|||||.||||||.||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 CAGTACTGTCACTACTACCCCGAGAACGTCAAGCCCAAACCCAAGCTTCAGGAGTGCAACTTGGATCCTTGTCC 1766
Query 1080 AGCCA---------------------------------------------------GGTGGGAGGCCACCCCAT 1102
||||| ||||||||||||||||.|
Sbjct 1767 AGCCAGTGACGGATACAAGCAGATCATGCCTTATGACCTCTACCATCCCCTTCCTCGGTGGGAGGCCACCCCGT 1840
Query 1103 GGACCGCGTGCTCCTCCTCGTGTGGGGGGGGCATCCAGAGCCGGGCAGTTTCCTGTGTGGAGGAGGACATCCAG 1176
|||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 GGACCGCGTGCTCCTCCTCATGTGGGGGGGGCATCCAGAGCCGGGCAGTTTCCTGTGTGGAGGAGGACATCCAG 1914
Query 1177 GGGCATGTCACTTCAGTGGAAGAGTGGAAATGCATGTACACCCCTAAGATGCCCATCGCGCAGCCCTGCAACAT 1250
||||||||||||||||||||||||||||||||||||||||||||.||||||||..|||.|||||||||||||||
Sbjct 1915 GGGCATGTCACTTCAGTGGAAGAGTGGAAATGCATGTACACCCCAAAGATGCCAGTCGTGCAGCCCTGCAACAT 1988
Query 1251 TTTTGACTGCCCTAAATGGCTGGCACAGGAGTGGTCTCCG------GT-AACTGT-------GCCT-------- 1302
|||||||||||||||||||||||||||||||||||||||| || |.|||| ||||
Sbjct 1989 TTTTGACTGCCCTAAATGGCTGGCACAGGAGTGGTCTCCGTGCACAGTGACCTGTGGCCAGGGCCTCAGATACC 2062
Query 1303 ---TCTTTCTTTGTTCAT-------------------------------------------------------- 1317
|..|.||.|| |||
Sbjct 2063 GCGTGGTACTCTG--CATTGACCACCGAGGAATGCACACAGGAGGCTGCAGTGCTAAAACAAAGCCCCACATAA 2134
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2135 AAGAAGAATGCATCATTCCCACACCGTGCTACAAGCCCAGAGAGAAACTTCCAATAGAGGCCAAGCTGCCATGG 2208
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2209 TTCAAGCAAGCCCAGGAGCTAGAGGAAGGAGCTGCAGTGTCTGAAGAGCCTTCGTTCATCCCAGAAGCTTGGTC 2282
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2283 GGCCTGTACTGTCACCTGTGGCGTGGGGACACAGGTGCGAATAATAAGATGCCAGGTGCTCCTGCCTTTCTCTC 2356
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2357 AGTCTGTGGCTGACCTGCCTGCGGATGAATGCGAAGGGCCTAAGCCAGCATCGCAACGTGCCTGTTATGCGGGA 2430
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2431 CCGTGCAACGGGGAAACTCCGGAATTTAACCCGGATAACGGAGACGGACTCTTGGGTGGCCTGCAGGACCTGGA 2504
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2505 CGAGCTGTATGACTGGGAATATGAGGGCTTCACCAAGTGCTCTGAGTCATGTGGAGGAGGTGTCCAGGAGGCTG 2578
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2579 TGGTAAGCTGCCTGAACAAACAGACCCGGGAACTCGCTGATGAGAACCTGTGTGTGACCAGCCGACGGCCCCCG 2652
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2653 CAGCTCCTGAAATCCTGTAACTTGGATCCCTGCCCAGCAAGGTGGGAAATTGGCAAGTGGAGCCCATGTAGCCT 2726
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2727 CACCTGTGGGGTTGGCCTGCAGACCAGAGATGTTGTCTGTTCCCACCTACTCTCCAGAGAGATGAACGAGGTGG 2800
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2801 TTGTCCTGGCCGATGAGCTGTGCCATCACCCCAAACCCAGCACAGTGCAAGCCTGCAACCGTTTCAATTGCCCC 2874
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2875 CCAGCCTGGTACCCTGCACAGTGGCAGCTGTGTTCCAGGACCTGTGGAGGAGGGATTCAGAAACGTGATGTTCT 2948
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2949 CTGCAAGCAGCGTATGGCTGACGGCAGCTTCCTGGAGCTTCCAGAGACCTTCTGTTCTGCCTCCAAACCAACCT 3022
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3023 CCCACCAAGGGTGCAAGAAAGATGACTGCCCCAGTGAGTGGCTTCTCTCAGAGTGGTCAGAGTGCTCTGTGAGC 3096
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3097 TGTGGGGAGGGCACCCAGACTCGAAGTGCCATTTGCCAGAGGGTGCTGAAAACTGGGGTCTCCACTGTTGTCAA 3170
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3171 TTCTACTTTGTGCCCTCCCCTGCCCTTCTCTTCCTCCATCAGACCCTGTATGCTGGCAACCTGTGCAAGGCCTG 3244
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3245 GAAGGCCTTCCACCAAGCACAGTCCTCACATCGCAGCTGCACGAAACATATACATCCAGACCCGCAGGCAGAGG 3318
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3319 AAGCTGCACTTCGTTGTGGGAGGATTTGCTTACCTGCTTCCCAAGACTACCGTGGTGCTCCGGTGTCCCACACG 3392
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3393 CAGATTCCGCAAGCCCCTCATCACGTGGGAAAAGGACGGCCAGCACAGCATCAGCTCGGCTCATGTCACCGTAG 3466
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3467 CCCCTTTTGGCTACCTGAAGATCCATCGCCTCAAGCCCTCAGATGCGGGCATCTACACCTGTTCTGCGGGGCCC 3540
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3541 GCCCGGGAGCAGTTTGTGATTAAGCTCATTGGAGGCAACCGCAAGCTCGTGGCCAGGCCCCTGAGCCTTTGGAG 3614
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3615 TGAGGAAGAGGAGGCCCTGCAGGTGAGGAAGACCAATCCAAAAGAAGCCTTGCAAACCCACAAACACCAAAATG 3688
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3689 GCATCTTCTCCAACGGCAGCAAAGCTGAGAAGCGCGGCCTCACTGCAGATCCTGGGAACCGCTATGATGACATT 3762
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3763 GTGTCTAGGCTGTTGGAGCAGGGCGGCTGGCCAGGAGAGCTCCTGGCCTCGTGGGAGGTGCAGGACTCTGCAGA 3836
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3837 AAGGAACGCATCCTCAGAAGAGGATCCCAATGCTGAACAGGCCCTCCTGCATCTCCCCTTCACCATGGTGGCCG 3910
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3911 AGCAGAAGCGTCTGGATGACATCCTCAGGAACCTGTCCCAGCAGCCAGAGGAGCTACGGGACCTCTACAGCAAG 3984
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3985 CACCTGGTGGCCCAGCTGGCCCAGGACATCTTCCGAAGCCACCTGGAGAACCAGGATCTGCTTCCTAAGCCCTC 4058
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4059 TGAGCAGAGGTTTCCTCCCATGGCCGTCCCAGCTCACAAACATGTCTCTGGCTTCAGCAGCTCCCTAAGGAGCT 4132
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4133 CATCTGGAGAGGCTGGAGGTGGCTCCCGTAGGCCTCATCGCAAGCCCGCCATCTTGCGGAAGATCTCAGCGGCA 4206
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4207 CAGCAACTCTCAGCCTCGGAGGTAGTCACCCACCTGGGGCAGACTGTGGCTCTAGCCAGTGGGACCCTGAGTGT 4280
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4281 GCTTCTGCACTGTGAGGCGGTAGGCAACCCAAGGCCCACCATCCACTGGACCAGGAACGGAGAAGCAGTTCAAT 4354
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4355 TCAGTGACAGGATTCTTCTACAGCCAGATGATTCCTTACAGATCTTGGCACCAGTGGAAGCTGATGTGGGTTTC 4428
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4429 TATACTTGCAATGCCACAAATGCCTTGGGATATGACTCTGTCTCCATTGCTGTCACATTAGCAGGAAAGCCACT 4502
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4503 AGTGAAGACATCCCGAATGACTGTGCTCAACACAGAGAAGCCTACAGTCACAGTGGATATCGGTGGCACCGTCA 4576
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4577 GAACCGTCCGAGGAGTGAATGTGACAATTAACTGCCAAGTGGCAGGTGTACCTGAAGCTGAAGTCACCTGGTTC 4650
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4651 AGAAATAAAAGCAAATTGGGCTCCTCCCACCACCTGCATGAGGGCTCCTCCCACCACCTGCATGAGGGCTCCTT 4724
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4725 GCTGCTCACAGATGTGTCCTTCTCTGATCAAGGCCTGTATTCCTGCAGGGCAGCCAATCTACACGGAGAACAGA 4798
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4799 CAGAGAGCACGCAGCTCCTGATTCTAGATCCCCCGCAAGTCCCCACACAGTTGGAAGACATCAGGGCCTTGCTC 4872
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4873 TTAGCCACTGGACCGAACCTTCCTTCGGTGCTTATGTCCCCTCTGGGAACACAGCTGGTCCTGGATCCTGGGAA 4946
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4947 TTCCGCTCTCCTTGGCTGCCCCATCAAAGGTCACCCCACCCCCAATATCACCTGGTTCCAAAATGGCCAGCCAA 5020
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5021 TTGCCACTGCCCCGGGGCTGACCCACCACATCTGGGGAGCTGGACAGATCCTACGAGTTGCAAATCTCAGTGGA 5094
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5095 GGACCTCAAGGGGAGTTCAGCTGCCTGGCTCAGAATGAAGCAGGGACCCTCCTGCAGAAAGCCTCTTTGGTGAT 5168
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5169 CCAAGATTACTGGTGGTCTGTGGATAGACTGGCAACCTGCTCCGCATCTTGTGGTAATAGAGGCATTCATCAGC 5242
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5243 CGCGACTCAGGTGTTTACTGAACACCACGGAAGTTGACCCTGAGCACTGTACAGGAAAGCCTCGGCCCGCCGTG 5316
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5317 CAGCCTGTTGCCTGCAACCGGAGAGACTGTCCTTCTCGATGGATGGTGACGTCCTGGTCCGCCTGTACCCGGAG 5390
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5391 TTGCGGTGGAGGTGTACAAACCCGAAGGGTGACCTGTCAGAAGTTGAAAGCTTCTGGTATTTCTACCCCGGTGT 5464
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5465 CCAATGACATGTGCAGTCAACTGGCCAAACGGCCTGTGGACACCCAGGCCTGCAACCAGCAGCTCTGTGTGGAA 5538
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5539 TGGGCCTTCTCCAGCTGGGGCCAGTGCAATGGGCCTTGCATAGGCCCTCGCCTTGCTGTGCAGCACAGGCAGGT 5612
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5613 CTTCTGCCAGACCCGGGATGGCATCACCTTACCATCAGAGCAGTGCAGTGCCCTCCCCAGGCCCGTGAGCACCC 5686
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5687 AAAACTGCTGGTCAGAGGCCTGCAGTGTACACTGGAGAGTCAGCCTCTGGACCCTATGCACGGCAACCTGTGGC 5760
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5761 AACTATGGCTTCCAGTCCCGGCGGGTGGAGTGTGTTCACGTGCGCACCAACAAGGCTGTGCCCGAGCACCTGTG 5834
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5835 TTCCTGGGGGCCCCGGCCCGCCAACTGGCAACGCTGCAACGTCACTCCATGTGAAAACAGTACGTTCCAATCCC 5908
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5909 AAAGAACATTCTGCAAATTCCCTACAGGCCATCGGGTACAGAGGGCAATCCCTGGGACTGAGCCTGAACACAGG 5982
Query 1318 ------------------ 1317
Sbjct 5983 GCACTGGATCAAGTTCCC 6000