Nucleotide Global Alignment
Description
- Query:
- TRCN0000465309
- Subject:
- XM_006538376.1
- Aligned Length:
- 5961
- Identities:
- 1157
- Gaps:
- 4656
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGCTTGCTAGGGTCCGGCTCTGGGCACCGAAGGACCTTTCCCTCTCAGGATGGCCAGGGTGGCATTCCAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTGGAGCAAAGCGAACAGCTGTGACCTTCCTTTAAAAATGAAGAAAGAGGCAGAAAGCAGCCCTGCTCGTTTTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTATCCCCACCCCCACCCCCGGACACATCGTGCTGCCTGGACGGCGCTTGGCTGACCCTAGAGGGAGGAGCAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGGGTGCTGGGGCGGGGTCGCCCAGCCACCGGGCGGGGACTGCCCCACTCACGCGGAACGCCCCCAGCCAGGCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CACGCGCTCCCATTCAAAGCAGCAGGGCTGCAAGGCCGCTGCAGTGACGCGCCCACCCGGCCCTGTGCTGCGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCCAGCCTGGGGTCCGCAGTTATCGCTCCACAACTCCTCCAGGACCATGGCAAGGCTGGTGACGCGTAACCGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCCGGGTTCCTGGCTCGCCTCATCGGTGGCATCTGGTGCCTCCTCTGTGTCGCAGGACAGAGCTGCTCTGCTCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCAGAGGGATGTTCACTTGGCATTTCTGGCCTGCTGGCTGTCCTTCCCACACCCACCCACCACCACTGACCGAG 592
Query 1 ----------------------------------------------------------ATGGAATGCTG----C 12
|.|| |||| |
Sbjct 593 GAAGCAGAGTGGAAAATCAAAATCCAACCCTCAAAGAAGTATGTGGAGACCAAAGCCAAGGG---GCTGTTTTC 663
Query 13 CGTCGGGCAACTCCTGGCACACTGCT------------CCT-------------CTTTCTGGCTTTCCTG---- 57
|...|||.|..| ||||||.| ||| ||.||||.| |||.||
Sbjct 664 CTGAGGGAATTT------ACACTGATTCGAAGAGAGAGCCTTCATGAAGAGTTCCTGTCTGAC-TTCTTGAATA 730
Query 58 ---------CT-----CCTGAGTTCCAGGACCGCACGCTCCGAGGAGGACCGGGACGGCCTATGGGATGCCTGG 117
|| ||.||||||||||||.||||||||.|||||.|||||.||.|||||.||||||||||||
Sbjct 731 GTCACAAAACTGAAGACCCGAGTTCCAGGACTGCACGCTCAGAGGAAGACCGTGAAGGCCTCTGGGATGCCTGG 804
Query 118 GGCCCATGGAGTGAATGCTCACGCACCTGCGGGGGAGGGGCCTCCTACTCTCTGAGGCGCTGCCTGAGCAGCAA 191
|||||.|||||.||.||.||..|.|||||.||.||.||.||||||||.||.|||||.|||||||||||||||||
Sbjct 805 GGCCCTTGGAGCGAGTGTTCCAGAACCTGTGGTGGGGGTGCCTCCTATTCCCTGAGACGCTGCCTGAGCAGCAA 878
Query 192 GAGCTGTGAAGGAAGAAATATCCGATACAGAACATGCAGTAATGTGGACTGCCCACCAGAAGCAGGTGATTTCC 265
||||||||||||.||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GAGCTGTGAAGGGAGAAATATTCGATATAGAACATGCAGTAATGTGGACTGCCCACCAGAAGCAGGTGATTTCC 952
Query 266 GAGCTCAGCAATGCTCAGCTCATAATGATGTCAAGCACCATGGCCAGTTTTATGAATGGCTTCCTGTGTCTAAT 339
|||||||.||.||.||.||||||||.||.||||||.|||||||.|||.|||||||||||||||||||.||||||
Sbjct 953 GAGCTCAACAGTGTTCTGCTCATAACGACGTCAAGTACCATGGACAGCTTTATGAATGGCTTCCTGTATCTAAT 1026
Query 340 GACCCTGACAACCCATGTTCACTCAAGTGCCAAGCCAAAGGAACAACCCTGGTTGTTGAACTAGCACCTAAGGT 413
|||||.|||||.|||||.|||||||||||||||||.||||||||.|.|||||||||.|||||||||||.|||||
Sbjct 1027 GACCCCGACAATCCATGCTCACTCAAGTGCCAAGCAAAAGGAACCAGCCTGGTTGTGGAACTAGCACCGAAGGT 1100
Query 414 CTTAGATGGTACGCGTTGCTATACAGAATCTTTGGATATGTGCATCAGTGGTTTATGCCAAATTGTTGGCTGCG 487
|||||||||||||||.||||||||||||||..||||||||||||||||.||..|||||||||||||||||||.|
Sbjct 1101 CTTAGATGGTACGCGATGCTATACAGAATCACTGGATATGTGCATCAGCGGCCTATGCCAAATTGTTGGCTGTG 1174
Query 488 ATCACCAGCTGGGAAGCACCGTCAAGGAAGATAACTGTGGGGTCTGCAACGGAGATGGGTCCACCTGCCGGCTG 561
|||||||||||||.|||||.|||||.||.|||||||||||.||.||||||||||||||.||.||.|||||||||
Sbjct 1175 ATCACCAGCTGGGGAGCACTGTCAAAGAGGATAACTGTGGAGTGTGCAACGGAGATGGCTCAACGTGCCGGCTG 1248
Query 562 GTCCGAGGGCAGTATAAATCCCAGCTCTCCGCAACCAAATCGGATGATACTGTGGTTGCAATTCCCTATGGAAG 635
||||||||||||||||||||.||||||||.||||..|||||||||||.||.|||||.||.|||||.||.||.||
Sbjct 1249 GTCCGAGGGCAGTATAAATCTCAGCTCTCTGCAAGTAAATCGGATGACACCGTGGTCGCCATTCCTTACGGCAG 1322
Query 636 TAGACATATTCGCCTTGTCTTAAAAGGTCCTGATCACTTATATCTGGAAACCAAAACCCTCCAGGGGACTAAAG 709
.|||||.||.|||||||||||||||||.||.|||||.||.||||||||.|||||.|||||||||||.|||||||
Sbjct 1323 CAGACACATCCGCCTTGTCTTAAAAGGGCCAGATCATTTGTATCTGGAGACCAAGACCCTCCAGGGAACTAAAG 1396
Query 710 GTGAAAACAGTCTCAGCTCCACAGGAACTTTCCTTGTGGACAATTCTAGTGTGGACTTCCAGAAATTTCCAGAC 783
|||||||.|||||.|||||.|||||.|.||||||||||||||||||||..|||||||||||||||.||||||||
Sbjct 1397 GTGAAAATAGTCTGAGCTCTACAGGCATTTTCCTTGTGGACAATTCTACAGTGGACTTCCAGAAACTTCCAGAC 1470
Query 784 AAAGAGATACTGAGAATGGCTGGACCACTCACAGCAGATTTCATTGTCAAGATTCGTAACTCGGGCTCCGCTGA 857
||||||||||||||.|||.||||.|||||.||||||||||||||..|||||||.|.|.|||.|||..|.||.||
Sbjct 1471 AAAGAGATACTGAGGATGACTGGGCCACTGACAGCAGATTTCATCATCAAGATCCATGACTTGGGACCTGCAGA 1544
Query 858 CAGTACAGTCCAGTTCATCTTCTATCAACCCATCATCCACCGATGGAGGGAGACGGATTTCTTTCCTTGCTCAG 931
|||.||.|||||||||||||||||.||.|||||||||||||||||||||||.||.||.||||||||||||||||
Sbjct 1545 CAGCACCGTCCAGTTCATCTTCTACCAGCCCATCATCCACCGATGGAGGGAAACAGACTTCTTTCCTTGCTCAG 1618
Query 932 CAACCTGTGGAGGAGGTTATCAGCTGACATCGGCTGAGTGCTACGATCTGAGGAGCAACCGTGTGGTTGCTGAC 1005
||||.|||||.|||||.||.||||||||.||.||.||||||||.|||||..||||.|||||||||||.||.|||
Sbjct 1619 CAACGTGTGGTGGAGGCTACCAGCTGACGTCTGCCGAGTGCTATGATCTACGGAGTAACCGTGTGGTGGCCGAC 1692
Query 1006 CAATACTGTCACTATTACCCAGAGAACATCAAACCCAAACCCAAGCTTCAGGAGTGCAACTTGGATCCTTGTCC 1079
||.|||||||||||.|||||.||||||.||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 CAGTACTGTCACTACTACCCCGAGAACGTCAAGCCCAAACCCAAGCTTCAGGAGTGCAACTTGGATCCTTGTCC 1766
Query 1080 AGCCAGGTGGGAGGCCACCCCATGGACCGCGTGCTCCTCCTCGTGTGGGGGGGGCATCCAGAGCCGGGCAGTTT 1153
|||||||||||||||||||||.||||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 1767 AGCCAGGTGGGAGGCCACCCCGTGGACCGCGTGCTCCTCCTCATGTGGGGGGGGCATCCAGAGCCGGGCAGTTT 1840
Query 1154 CCTGTGTGGAGGAGGACATCCAGGGGCATGTCACTTCAGTGGAAGAGTGGAAATGCATGTACACCCCTAAGATG 1227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 1841 CCTGTGTGGAGGAGGACATCCAGGGGCATGTCACTTCAGTGGAAGAGTGGAAATGCATGTACACCCCAAAGATG 1914
Query 1228 CCCATCGCGCAGCCCTGCAACATTTTTGACTGCCCTAAATGGCTGGCACAGGAGTGGTCTCCG------GT-AA 1294
||..|||.||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |.
Sbjct 1915 CCAGTCGTGCAGCCCTGCAACATTTTTGACTGCCCTAAATGGCTGGCACAGGAGTGGTCTCCGTGCACAGTGAC 1988
Query 1295 CTGT-------GCCT-----------TCTTTCTTTGTTCAT--------------------------------- 1317
|||| |||| |..|.||.|| |||
Sbjct 1989 CTGTGGCCAGGGCCTCAGATACCGCGTGGTACTCTG--CATTGACCACCGAGGAATGCACACAGGAGGCTGCAG 2060
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2061 TGCTAAAACAAAGCCCCACATAAAAGAAGAATGCATCATTCCCACACCGTGCTACAAGCCCAGAGAGAAACTTC 2134
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2135 CAATAGAGGCCAAGCTGCCATGGTTCAAGCAAGCCCAGGAGCTAGAGGAAGGAGCTGCAGTGTCTGAAGAGCCT 2208
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2209 TCGTTCATCCCAGAAGCTTGGTCGGCCTGTACTGTCACCTGTGGCGTGGGGACACAGGTGCGAATAATAAGATG 2282
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2283 CCAGGTGCTCCTGCCTTTCTCTCAGTCTGTGGCTGACCTGCCTGCGGATGAATGCGAAGGGCCTAAGCCAGCAT 2356
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2357 CGCAACGTGCCTGTTATGCGGGACCGTGCAACGGGGAAACTCCGGAATTTAACCCGGATAACGGAGACGGACTC 2430
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2431 TTGGGTGGCCTGCAGGACCTGGACGAGCTGTATGACTGGGAATATGAGGGCTTCACCAAGTGCTCTGAGTCATG 2504
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2505 TGGAGGAGGTGTCCAGGAGGCTGTGGTAAGCTGCCTGAACAAACAGACCCGGGAACTCGCTGATGAGAACCTGT 2578
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2579 GTGTGACCAGCCGACGGCCCCCGCAGCTCCTGAAATCCTGTAACTTGGATCCCTGCCCAGCAAGGTGGGAAATT 2652
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2653 GGCAAGTGGAGCCCATGTAGCCTCACCTGTGGGGTTGGCCTGCAGACCAGAGATGTTGTCTGTTCCCACCTACT 2726
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2727 CTCCAGAGAGATGAACGAGGTGGTTGTCCTGGCCGATGAGCTGTGCCATCACCCCAAACCCAGCACAGTGCAAG 2800
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2801 CCTGCAACCGTTTCAATTGCCCCCCAGCCTGGTACCCTGCACAGTGGCAGCTGTGTTCCAGGACCTGTGGAGGA 2874
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2875 GGGATTCAGAAACGTGATGTTCTCTGCAAGCAGCGTATGGCTGACGGCAGCTTCCTGGAGCTTCCAGAGACCTT 2948
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2949 CTGTTCTGCCTCCAAACCAACCTCCCACCAAGGGTGCAAGAAAGATGACTGCCCCAGTGAGTGGCTTCTCTCAG 3022
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3023 AGTGGTCAGAGTGCTCTGTGAGCTGTGGGGAGGGCACCCAGACTCGAAGTGCCATTTGCCAGAGGGTGCTGAAA 3096
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3097 ACTGGGGTCTCCACTGTTGTCAATTCTACTTTGTGCCCTCCCCTGCCCTTCTCTTCCTCCATCAGACCCTGTAT 3170
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3171 GCTGGCAACCTGTGCAAGGCCTGGAAGGCCTTCCACCAAGCACAGTCCTCACATCGCAGCTGCACGAAACATAT 3244
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3245 ACATCCAGACCCGCAGGCAGAGGAAGCTGCACTTCGTTGTGGGAGGATTTGCTTACCTGCTTCCCAAGACTACC 3318
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3319 GTGGTGCTCCGGTGTCCCACACGCAGATTCCGCAAGCCCCTCATCACGTGGGAAAAGGACGGCCAGCACAGCAT 3392
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3393 CAGCTCGGCTCATGTCACCGTAGCCCCTTTTGGCTACCTGAAGATCCATCGCCTCAAGCCCTCAGATGCGGGCA 3466
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3467 TCTACACCTGTTCTGCGGGGCCCGCCCGGGAGCAGTTTGTGATTAAGCTCATTGGAGGCAACCGCAAGCTCGTG 3540
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3541 GCCAGGCCCCTGAGCCTTTGGAGTGAGGAAGAGGAGGCCCTGCAGGTGAGGAAGACCAATCCAAAAGAAGCCTT 3614
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3615 GCAAACCCACAAACACCAAAATGGCATCTTCTCCAACGGCAGCAAAGCTGAGAAGCGCGGCCTCACTGCAGATC 3688
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3689 CTGGGAACCGCTATGATGACATTGTGTCTAGGCTGTTGGAGCAGGGCGGCTGGCCAGGAGAGCTCCTGGCCTCG 3762
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3763 TGGGAGGTGCAGGACTCTGCAGAAAGGAACGCATCCTCAGAAGAGGATCCCAATGCTGAACAGGCCCTCCTGCA 3836
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3837 TCTCCCCTTCACCATGGTGGCCGAGCAGAAGCGTCTGGATGACATCCTCAGGAACCTGTCCCAGCAGCCAGAGG 3910
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3911 AGCTACGGGACCTCTACAGCAAGCACCTGGTGGCCCAGCTGGCCCAGGACATCTTCCGAAGCCACCTGGAGAAC 3984
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3985 CAGGATCTGCTTCCTAAGCCCTCTGAGCAGAGGTTTCCTCCCATGGCCGTCCCAGCTCACAAACATGTCTCTGG 4058
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4059 CTTCAGCAGCTCCCTAAGGAGCTCATCTGGAGAGGCTGGAGGTGGCTCCCGTAGGCCTCATCGCAAGCCCGCCA 4132
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4133 TCTTGCGGAAGATCTCAGCGGCACAGCAACTCTCAGCCTCGGAGGTAGTCACCCACCTGGGGCAGACTGTGGCT 4206
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4207 CTAGCCAGTGGGACCCTGAGTGTGCTTCTGCACTGTGAGGCGGTAGGCAACCCAAGGCCCACCATCCACTGGAC 4280
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4281 CAGGAACGGAGAAGCAGTTCAATTCAGTGACAGGATTCTTCTACAGCCAGATGATTCCTTACAGATCTTGGCAC 4354
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4355 CAGTGGAAGCTGATGTGGGTTTCTATACTTGCAATGCCACAAATGCCTTGGGATATGACTCTGTCTCCATTGCT 4428
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4429 GTCACATTAGCAGGAAAGCCACTAGTGAAGACATCCCGAATGACTGTGCTCAACACAGAGAAGCCTACAGTCAC 4502
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4503 AGTGGATATCGGTGGCACCGTCAGAACCGTCCGAGGAGTGAATGTGACAATTAACTGCCAAGTGGCAGGTGTAC 4576
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4577 CTGAAGCTGAAGTCACCTGGTTCAGAAATAAAAGCAAATTGGGCTCCTCCCACCACCTGCATGAGGGCTCCTCC 4650
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4651 CACCACCTGCATGAGGGCTCCTTGCTGCTCACAGATGTGTCCTTCTCTGATCAAGGCCTGTATTCCTGCAGGGC 4724
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4725 AGCCAATCTACACGGAGAACAGACAGAGAGCACGCAGCTCCTGATTCTAGATCCCCCGCAAGTCCCCACACAGT 4798
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4799 TGGAAGACATCAGGGCCTTGCTCTTAGCCACTGGACCGAACCTTCCTTCGGTGCTTATGTCCCCTCTGGGAACA 4872
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4873 CAGCTGGTCCTGGATCCTGGGAATTCCGCTCTCCTTGGCTGCCCCATCAAAGGTCACCCCACCCCCAATATCAC 4946
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4947 CTGGTTCCAAAATGGCCAGCCAATTGCCACTGCCCCGGGGCTGACCCACCACATCTGGGGAGCTGGACAGATCC 5020
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5021 TACGAGTTGCAAATCTCAGTGGAGGACCTCAAGGGGAGTTCAGCTGCCTGGCTCAGAATGAAGCAGGGACCCTC 5094
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5095 CTGCAGAAAGCCTCTTTGGTGATCCAAGATTACTGGTGGTCTGTGGATAGACTGGCAACCTGCTCCGCATCTTG 5168
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5169 TGGTAATAGAGGCATTCATCAGCCGCGACTCAGGTGTTTACTGAACACCACGGAAGTTGACCCTGAGCACTGTA 5242
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5243 CAGGAAAGCCTCGGCCCGCCGTGCAGCCTGTTGCCTGCAACCGGAGAGACTGTCCTTCTCGATGGATGGTGACG 5316
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5317 TCCTGGTCCGCCTGTACCCGGAGTTGCGGTGGAGGTGTACAAACCCGAAGGGTGACCTGTCAGAAGTTGAAAGC 5390
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5391 TTCTGGTATTTCTACCCCGGTGTCCAATGACATGTGCAGTCAACTGGCCAAACGGCCTGTGGACACCCAGGCCT 5464
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5465 GCAACCAGCAGCTCTGTGTGGAATGGGCCTTCTCCAGCTGGGGCCAGTGCAATGGGCCTTGCATAGGCCCTCGC 5538
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5539 CTTGCTGTGCAGCACAGGCAGGTCTTCTGCCAGACCCGGGATGGCATCACCTTACCATCAGAGCAGTGCAGTGC 5612
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5613 CCTCCCCAGGCCCGTGAGCACCCAAAACTGCTGGTCAGAGGCCTGCAGTGTACACTGGAGAGTCAGCCTCTGGA 5686
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5687 CCCTATGCACGGCAACCTGTGGCAACTATGGCTTCCAGTCCCGGCGGGTGGAGTGTGTTCACGTGCGCACCAAC 5760
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5761 AAGGCTGTGCCCGAGCACCTGTGTTCCTGGGGGCCCCGGCCCGCCAACTGGCAACGCTGCAACGTCACTCCATG 5834
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5835 TGAAAACAGTACGTTCCAATCCCAAAGAACATTCTGCAAATTCCCTACAGGCCATCGGGTACAGAGGGCAATCC 5908
Query 1318 ----------------------------------------- 1317
Sbjct 5909 CTGGGACTGAGCCTGAACACAGGGCACTGGATCAAGTTCCC 5949