Nucleotide Global Alignment

Description

Query:
TRCN0000465921
Subject:
XR_429445.2
Aligned Length:
1873
Identities:
1000
Gaps:
873

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATAAATGAATGAATGATGAATAAGAAAGACGGTGAGCCTGAGGCTTGCTTGTGTAGCCTGGCCTAAGGGGCAAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGAAGGCGTGGCCTGTCCTGGCCTCTGAGAGTGGGATGGTTGGTGCTGTACCTCAGGGGACAGGGCGGGGCGGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGGAGGCGGGGCCAGGCCTGGTCTCTGATAACGGGATGGGTGGTGCTGGACCTCGGGCGGGGCCGGGCCTCGTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCGGGAGGAGGCAGGGCAGGGCCTCTGGGACGGGGCTGGACGGCTTGTTGACGGAAACGAGCCCTTGACGCTGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCCCGGAAGTGGAGCGGCTGTCGCAGTGCGGCTCCGGCAGTGGCAGCGGAGGCCTGTGTTTGCGGCCTTCGGC  370

Query    1  -----------ATGGCGAGCGCAACTGCACCTGCAGCCGCAGTCCCCACCCTGGCTTCGCCTTTGGAGCAGCTC  63
                       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AAGCGACTGAGATGGCGAGCGCAACTGCACCTGCAGCCGCAGTCCCCACCCTGGCTTCGCCTTTGGAGCAGCTC  444

Query   64  CGGCACTTGGCGGAGGAGCTGCGGTTGCTCCTGCCTCGAGTGCGGGTCGGCGAAGCCCAGGAGACCACCGAGGA  137
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CGGCACTTGGCGGAGGAGCTGCGGTTGCTCCTGCCTCGAGTGCGGGTCGGCGAAGCCCAGGAGACCACCGAGGA  518

Query  138  GTTTAATCGAGAGATGTTCTGGAGAAGACTCAATGAGGCAGCTGTGACTGTGTCAAGGGAAGCCACGACTCTGA  211
            ||||||||||||||||||||||||||||||||                                          
Sbjct  519  GTTTAATCGAGAGATGTTCTGGAGAAGACTCA------------------------------------------  550

Query  212  CCATAGTCTTCTCTCAGCTTCCACTGCCGTCTCCACAGGAAACCCAGAAGTTCTGTGAACAAGTCCATGCTGCC  285
                                                  ||||||||||||||||||||||||||||||||||||
Sbjct  551  --------------------------------------GAAACCCAGAAGTTCTGTGAACAAGTCCATGCTGCC  586

Query  286  ATCAAGGCATTTATTGCAGTGTACTATTTGCTTCCAAAGGATCAGGGGATCACCCTGAGAAAGCTGGTACGGGG  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  587  ATCAAGGCATTTATTGCAGTGTACTATTTGCTTCCAAAGGATCAGGGGATCACCCTGAGAAAGCTGGTACGGGG  660

Query  360  CGCCACCCTGGACATCGTGGATGGCATGGCTCAGCTCATGGAAGTACTTTCCGTCACTCCAACTCAGAGCCCTG  433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  CGCCACCCTGGACATCGTGGATGGCATGGCTCAGCTCATGGAAGTACTTTCCGTCACTCCAACTCAGAGCCCTG  734

Query  434  AGAACAATGACCTTATTTCCTACAACAGTGTCTGGGTTGCGTGCCAGCAGATGCCTCAGATACCAAGAGATAAC  507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735  AGAACAATGACCTTATTTCCTACAACAGTGTCTGGGTTGCGTGCCAGCAGATGCCTCAGATACCAAGAGATAAC  808

Query  508  AAAGCTGCAGCTCTTTTGATGCTGACCAAGAATGTGGATTTTGTGAAGGATGCACATGAAGAAATGGAGCAGGC  581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809  AAAGCTGCAGCTCTTTTGATGCTGACCAAGAATGTGGATTTTGTGAAGGATGCACATGAAGAAATGGAGCAGGC  882

Query  582  TGTGGAAGAATGTGACCCTTACTCTGGCCTCTTGAATGATACTGAGGAGAACAACTCTGACAACCACAATCATG  655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  883  TGTGGAAGAATGTGACCCTTACTCTGGCCTCTTGAATGATACTGAGGAGAACAACTCTGACAACCACAATCATG  956

Query  656  AGGATGATGTGTTGGGGTTTCCCAGCAATCAGGACTTGTATTGGTCAGAGGACGATCAAGAGCTCATAATCCCA  729
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  957  AGGATGATGTGTTGGGGTTTCCCAGCAATCAGGACTTGTATTGGTCAGAGGACGATCAAGAGCTCATAATCCCA  1030

Query  730  TGCCTTGCGCTGGTGAGAGCATCCAAAGCCTGCCTGAAGAAAATTCGGATGTTAGTGGCAGAGAATGGGAAGAA  803
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031  TGCCTTGCGCTGGTGAGAGCATCCAAAGCCTGCCTGAAGAAAATTCGGATGTTAGTGGCAGAGAATGGGAAGAA  1104

Query  804  GGATCAGGTGGCACAGCTGGATGACATTGTGGATATTTCTGATGAAATCAGCCCTAGTGTGGATGATTTGGCTC  877
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105  GGATCAGGTGGCACAGCTGGATGACATTGTGGATATTTCTGATGAAATCAGCCCTAGTGTGGATGATTTGGCTC  1178

Query  878  TGAGCATATATCCACCTATGTGTCACCTGACCGTGCGAATCAAT------------------------------  921
            ||||||||||||||||||||||||||||||||||||||||||||                              
Sbjct 1179  TGAGCATATATCCACCTATGTGTCACCTGACCGTGCGAATCAATGAACCTTAGTCATTTCTGCTTTATATTTTG  1252

Query  922  ---------------------------TCTGCGAAACTTGTATCTGTTTTAAAGAAGGCACTTGAAATTACAAA  968
                                       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253  AGCTATCAGCATTTGGGACCAATTCAGTCTGCGAAACTTGTATCTGTTTTAAAGAAGGCACTTGAAATTACAAA  1326

Query  969  AGCAAGTCATGTGACCCCTCAGCCAGAAGATAGTTGGATCCCTTTACTTATTAATGCCATTGATCATTGCATGA  1042
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327  AGCAAGTCATGTGACCCCTCAGCCAGAAGATAGTTGGATCCCTTTACTTATTAATGCCATTGATCATTGCATGA  1400

Query 1043  ATAGAATCAAGGAGCTCACTCAGAGTGAACTTGAATTA------------------------------------  1080
            ||||||||||||||||||||||||||||||||||||||                                    
Sbjct 1401  ATAGAATCAAGGAGCTCACTCAGAGTGAACTTGAATTATGACTTTTCAGGCTCATTTGTACTCTCTTCCCCTCT  1474

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1475  CATCGTCATGGTCAGGCTCTGATACCTGCTTTTAAAATGGAGCTAGAATGCTTGCTGGATTGAAAGGGAGTGCC  1548

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1549  TATCTATATTTAGCAAGAGACACTATTACCAAAGATTGTTGGTTAGGCCAGATTGACACCTATTTATAAACCAT  1622

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1623  ATGCGTATATTTTTCTGTGCTATATATGAAAAATAATTGCATGATTTCTCATTCCTGAGTCATTTCTCAGAGAT  1696

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1697  TCCTAGGAAAGCTGCCTTATTCTCTTTTTGCAGTAAAGTATGTTGTTTTCATTGTAAAGATGTTGATGGTCTCA  1770

Query 1081  -----------------------  1080
                                   
Sbjct 1771  ATAAAATGCTAACTTGCCAGTGA  1793

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.