Nucleotide Global Alignment

Description

Query:
TRCN0000466550
Subject:
NR_163909.1
Aligned Length:
2692
Identities:
1889
Gaps:
787

Alignment

Query    1  -ATGAGGCCCCGGAAAGCCTTCCTGCTCCTGCTGCTCTTGGGGCTGGTGCAGCTGCTGGCCGTGGCGGGTGCCG  73
             |..|||.|||.|                ||.|| ||.|    |.||||    |||  .|||||| |.|||...
Sbjct    1  GAGCAGGACCCAG----------------TGTTG-TCAT----CAGGTG----TGC--CCCGTGG-GAGTGGAC  46

Query   74  AGGG----------CCCGGACGAGGATTCTTCTAACAGAGAAAATGCCATTGAGGATGAAGAGGAGGAGGAGGA  137
            ||||          ||.|  |...||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   47  AGGGATTGAGGCAACCTG--CTCAGATTCTTCTAACAGAGAAAATGCCATTGAGGATGAAGAGGAGGAGGAGGA  118

Query  138  GGAAGATGATGATGAGGAAGAAGACGACTTGGAAGTTAAGGAAGAAAATGGAGTCTTGGTCCTAAATGATGCAA  211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  GGAAGATGATGATGAGGAAGAAGACGACTTGGAAGTTAAGGAAGAAAATGGAGTCTTGGTCCTAAATGATGCAA  192

Query  212  ACTTTGATAATTTTGTGGCTGACAAAGACACAGTGCTGCTGGAGTTTTATGCTCCATGGTGTGGACATTGCAAG  285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  193  ACTTTGATAATTTTGTGGCTGACAAAGACACAGTGCTGCTGGAGTTTTATGCTCCATGGTGTGGACATTGCAAG  266

Query  286  CAGTTTGCTCCGGAATATGAAAAAATTGCCAACATATTAAAGGATAAAGATCCTCCCATTCCTGTTGCCAAGAT  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  267  CAGTTTGCTCCGGAATATGAAAAAATTGCCAACATATTAAAGGATAAAGATCCTCCCATTCCTGTTGCCAAGAT  340

Query  360  CGATGCAACCTCAGCGTCTGTGCTGGCCAGCAGGTTTGATGTGAGTGGCTACCCCACCATCAAGATCCTTAAGA  433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  341  CGATGCAACCTCAGCGTCTGTGCTGGCCAGCAGGTTTGATGTGAGTGGCTACCCCACCATCAAGATCCTTAAGA  414

Query  434  AGGGGCAGGCTGTAGACTACGAGGGCTCCAGAACCCAGGAAGAAATTGTTGCCAAGGTCAGAGAAGTCTCCCAG  507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  AGGGGCAGGCTGTAGACTACGAGGGCTCCAGAACCCAGGAAGAAATTGTTGCCAAGGTCAGAGAAGTCTCCCAG  488

Query  508  CCCGACTGGACGCCTCCACCAGAAGTCACGCTTGTGTTGACCAAAGAGAACTTTGATGAAGTTGTGAATGATGC  581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  489  CCCGACTGGACGCCTCCACCAGAAGTCACGCTTGTGTTGACCAAAGAGAACTTTGATGAAGTTGTGAATGATGC  562

Query  582  AGATATCATTCTGGTGGAGTTTTATGCCCCATGGTGTGGACACTGCAAGAAACTTGCCCCCGAGTATGAGAAGG  655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  563  AGATATCATTCTGGTGGAGTTTTATGCCCCATGGTGTGGACACTGCAAGAAACTTGCCCCCGAGTATGAGAAGG  636

Query  656  CCGCCAAGGAGCTCAGCAAGCGTTCTCCTCCAATTCCCCTGGCAAAGGTCGACGCCACCGCAGAAACAGACCTG  729
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  637  CCGCCAAGGAGCTCAGCAAGCGTTCTCCTCCAATTCCCCTGGCAAAGGTCGACGCCACCGCAGAAACAGACCTG  710

Query  730  GCCAAGAGGTTTGATGTCTCTGGCTATCCCACCCTGAAAATTTTCCGCAAAGGAAGGCCTTATGACTACAACGG  803
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  711  GCCAAGAGGTTTGATGTCTCTGGCTATCCCACCCTGAAAATTTTCCGCAAAGGAAGGCCTTATGACTACAACGG  784

Query  804  CCCACGAGAAAAATATGGAATCGTTGATTACATGATCGAGCAGTCCGGGCCTCCCTCCAAGGAGATTCTGACCC  877
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  785  CCCACGAGAAAAATATGGAATCGTTGATTACATGATCGAGCAGTCCGGGCCTCCCTCCAAGGAGATTCTGACCC  858

Query  878  TGAAGCAGGTCCAGGAGTTCCTGAAGGATGGAGACGATGTCATCATCATCGGGGTCTTTAAGGGGGAGAGTGAC  951
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  859  TGAAGCAGGTCCAGGAGTTCCTGAAGGATGGAGACGATGTCATCATCATCGGGGTCTTTAAGGGGGAGAGTGAC  932

Query  952  CCAGCCTACCAGCAATACCAGGATGCCGCTAACAACCTGAGAGAAGATTACAAATTTCACCACACTTTCAGCAC  1025
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  933  CCAGCCTACCAGCAATACCAGGATGCCGCTAACAACCTGAGAGAAGATTACAAATTTCACCACACTTTCAGCAC  1006

Query 1026  AGAAATAGCAAAGTTCTTGAAAGTCTCCCAGGGGCAGTTGGTTGTAATGCAGCCTGAGAAATTCCAGTCCAAGT  1099
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007  AGAAATAGCAAAGTTCTTGAAAGTCTCCCAGGGGCAGTTGGTTGTAATGCAGCCTGAGAAATTCCAGTCCAAGT  1080

Query 1100  ATGAGCCCCGGAGCCACATGATGGACGTCCAGGGCTCCACCCAGGACTCGGCCATCAAGGACTTCGTGCTGAAG  1173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081  ATGAGCCCCGGAGCCACATGATGGACGTCCAGGGCTCCACCCAGGACTCGGCCATCAAGGACTTCGTGCTGAAG  1154

Query 1174  TACGCCCTGCCCCTGGTTGGCCACCGCAAGGTGTCAAACGATGCTAAGCGCTACACCAGGCGCCCCCTGGTGGT  1247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155  TACGCCCTGCCCCTGGTTGGCCACCGCAAGGTGTCAAACGATGCTAAGCGCTACACCAGGCGCCCCCTGGTGGT  1228

Query 1248  CGTCTACTACAGTGTGGACTTCAGCTTTGATTACAGAGCTGCAACTCAGTTTTGGCGGAGCAAAGTCCTAGAGG  1321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229  CGTCTACTACAGTGTGGACTTCAGCTTTGATTACAGAGCTGCAACTCAGTTTTGGCGGAGCAAAGTCCTAGAGG  1302

Query 1322  TGGCCAAGGACTTCCCTGAGTACACCTTTGCCATTGCGGACGAAGAGGACTATGCTGGGGAGGTGAAGGACCTG  1395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303  TGGCCAAGGACTTCCCTGAGTACACCTTTGCCATTGCGGACGAAGAGGACTATGCTGGGGAGGTGAAGGACCTG  1376

Query 1396  GGGCTCAGCGAGAGTGGGGAGGATGTCAATGCCGCCATCCTGGACGAGAGTGGGAAGAAGTTCGCCATGGAGCC  1469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377  GGGCTCAGCGAGAGTGGGGAGGATGTCAATGCCGCCATCCTGGACGAGAGTGGGAAGAAGTTCGCCATGGAGCC  1450

Query 1470  AGAGGAGTTTGACTCTGACACCCTCCGCGAGTTTGTCACTGCTTTCAAAAAAGGAAAACTGAAGCCAGTCATCA  1543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451  AGAGGAGTTTGACTCTGACACCCTCCGCGAGTTTGTCACTGCTTTCAAAAAAGGAAAACTGAAGCCAGTCATCA  1524

Query 1544  AATCCCAGCCAGTGCCCAAGAACAACAAGGGACCCGTCAAGGTCGTGGTGGGAAAGACCTTTGACTCCATTGTG  1617
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525  AATCCCAGCCAGTGCCCAAGAACAACAAGGGACCCGTCAAGGTCGTGGTGGGAAAGACCTTTGACTCCATTGTG  1598

Query 1618  ATGGACCCCAAGAAGGACGTCCTCATCGAGTTCTACGCGCCATGGTGCGGGCACTGCAAGCAGCTAGAGCCCGT  1691
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599  ATGGACCCCAAGAAGGACGTCCTCATCGAGTTCTACGCGCCATGGTGCGGGCACTGCAAGCAGCTAGAGCCCGT  1672

Query 1692  GTACAACAGCCTGGCCAAGAAGTACAAGGGCCAAAAGGGCCTGGTCATCGCCAAGATGGACGCCACTGCCAACG  1765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673  GTACAACAGCCTGGCCAAGAAGTACAAGGGCCAAAAGGGCCTGGTCATCGCCAAGATGGACGCCACTGCCAACG  1746

Query 1766  ACGTCCCCAGCGACCGCTATAAGGTGGAGGGCTTCCCCACCATCTACTTCGCCCCCAGTGGGGACAAAAAGAAC  1839
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747  ACGTCCCCAGCGACCGCTATAAGGTGGAGGGCTTCCCCACCATCTACTTCGCCCCCAGTGGGGACAAAAAGAAC  1820

Query 1840  CCAGTTAAATTTGAGGGTGGAGACAGAGATCTGGAGCATTTGAGCAAGTTTATAGAAGAACATGCCACAAAACT  1913
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821  CCAGTTAAATTTGAGGGTGGAGACAGAGATCTGGAGCATTTGAGCAAGTTTATAGAAGAACATGCCACAAAACT  1894

Query 1914  GAGCAGGACCAAGGAAGAGCTT----------------------------------------------------  1935
            ||||||||||||||||||||||                                                    
Sbjct 1895  GAGCAGGACCAAGGAAGAGCTTTGAAGGCCTGAGGTCTGCGGAAGGTGGGAGGAGGCAGACGCCCTGCGTGGCC  1968

Query 1936  --------------------------------------------------------------------------  1935
                                                                                      
Sbjct 1969  CATGGTCGGGGCGTCCACGCCGAGGCCGGCAACAAACGACAGTATCTCGGATTCCTTTTTTTTTTTTTTTAATT  2042

Query 1936  --------------------------------------------------------------------------  1935
                                                                                      
Sbjct 2043  TTTTATACTTTGGTGTTTCACTTCATGCTCTGAATACTGAATAACCATGAATGACTGAATAGTTTAGTCCAGAT  2116

Query 1936  --------------------------------------------------------------------------  1935
                                                                                      
Sbjct 2117  TTTTACAGAGGATACATCTATTTTTATCATTATTTGGGGTTTGAAAAATTTTTTTTTACACCTTCTAATTTCTT  2190

Query 1936  --------------------------------------------------------------------------  1935
                                                                                      
Sbjct 2191  TATTTCTCAAAGCAGATAATTCTTCTGTGTGAAAATGTTTTCTTTTTTTAATTTAAGGTTTAAAATTCCTTTTC  2264

Query 1936  --------------------------------------------------------------------------  1935
                                                                                      
Sbjct 2265  CAAATCATGTTGATTTTGCTCTTTGCTTTTTCGTTGTCTGAGAAATTGTTGGCGTAGATTTGGCTTCTGGTATG  2338

Query 1936  --------------------------------------------------------------------------  1935
                                                                                      
Sbjct 2339  TGTTTCTGATTGCTTCCTGTTGAGCACAAAGTGAGAGCTGCCACTGAGCAGCCCTGCCAGGGGTGCTGTTTCAG  2412

Query 1936  --------------------------------------------------------------------------  1935
                                                                                      
Sbjct 2413  GCTGGGCATCGCCAGGCGGCCTCCCTGCAAACCAAGGGCTGGGGGCAAAGGGGCATGATCCAGGGTCCCCCAGG  2486

Query 1936  --------------------------------------------------------------------------  1935
                                                                                      
Sbjct 2487  GTGGGCTCAGCTCCAGGGAGAGGCCACCCACGTGGCAGCCCCACCTCTTGAGAGCCCCCAGTGCCGGAGCAGAA  2560

Query 1936  --------------------------------------------------------------------------  1935
                                                                                      
Sbjct 2561  AGGACCCTGGACCCAGAGGCAGATACTGCGGGGTGGTAGAAAAGGTAGAGTAGGCTGTGGCAATGGAATAAAAC  2634

Query 1936  ----------------------------  1935
                                        
Sbjct 2635  ACGATTAAAAACGTTAAGAACTGCGTTA  2662

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.