Nucleotide Global Alignment

Description

Query:
TRCN0000466580
Subject:
XM_017317995.1
Aligned Length:
2338
Identities:
1991
Gaps:
50

Alignment

Query    1  ATGGAGGAGGACAAGCTCTTATCTGCAG-TGCCTGAGGAAGGCGA-TGCCACCC----GTGACCCCGGTCCAGA  68
            |||||.||.||.||||||..||.|| || |||...||||||| || |||.||||    | ||||.|||.|..||
Sbjct    1  ATGGATGAAGAGAAGCTCCCATGTG-AGCTGCACAAGGAAGG-GAGTGCTACCCAGGAG-GACCACGGCCTGGA  71

Query   69  GCCTGAAGAGGAGCCAGGGGTCCGGAATGGGA---TGGCCAGTGAGGGCCTGAACAGCAGCCTCTGCAGCCCAG  139
            |||.|||||||||||.|||.|||.||||||.|   ..|||||.||.|||||||.||||..|.||.||.||||||
Sbjct   72  GCCCGAAGAGGAGCCTGGGCTCCAGAATGGAACAGCAGCCAGCGAAGGCCTGAGCAGCCACATCAGCGGCCCAG  145

Query  140  GGCAC-GAGCGAAGGGGCACCCCAGCGGACACTGAGGAACCCACGA-AGGACCCAGATGTGGCCTTCCATGGCC  211
            |   | |.|.||||    |||..||.||..||...|||.||...|| ||| |||||||||||||.|.|.||   
Sbjct  146  G---CGGTGAGAAG----ACCTTAGAGGGTACCATGGAGCCTGTGAGAGG-CCCAGATGTGGCCCTGCCTG---  208

Query  212  TCAGCCTTGGCCTCTCTCTCACCAATGGCCTAGCCCTGGGGCCAGACTTGAACATTCTGGAAGATTCAGCGGAG  285
               |||||..|||||||.|.|||||||||||.||..||||.|.|||...|||||||.||||||||||....||.
Sbjct  209  ---GCCTTAACCTCTCTTTGACCAATGGCCTGGCTTTGGGACAAGATGGGAACATTTTGGAAGATTCCATAGAA  279

Query  286  TCCAGGCCCTGGAGGGCTGGCGTGCTGGCAGAGGGGGACAATGCTTCC--AGGAGCCTCTACCCAGATGCTGAG  357
            |..|.|.|||||||   ..|||..|..|||||||.|||..|||  |||  .||||.|.||..||||||||||.|
Sbjct  280  TTTAAGACCTGGAG---AAGCGGACCAGCAGAGGAGGAGGATG--TCCCTGGGAGTCCCTGTCCAGATGCTGGG  348

Query  358  GACCCTCAGCTGGGGTTGGATGGTCCCGGGGAGCCAGATGTGCGGGATGGCTTCAGCGCCACGTTTGAGAAGAT  431
            |||||||||||||||.|||||.||||.||.||.||||||||.||.|||||||||||.|||||.|||||||||||
Sbjct  349  GACCCTCAGCTGGGGCTGGATTGTCCTGGCGAACCAGATGTACGTGATGGCTTCAGTGCCACTTTTGAGAAGAT  422

Query  432  TCTGGAGTCAGAGCTGCTGCGGGGCACCCAGTACAGCAGCCTCGACTCCCTAGACGGGCTGAGCCTCACGGATG  505
            |||||||||.|||||.|||||||||||||||||.||||||||.|||||..||||.|.||||||.|||||.||.|
Sbjct  423  TCTGGAGTCGGAGCTACTGCGGGGCACCCAGTATAGCAGCCTGGACTCTTTAGATGTGCTGAGTCTCACTGACG  496

Query  506  AGAGCGACAGCTGCGTCAGCTTCGAGGCCCCCCTCACACCCCTCATCCAGCAGCGGGCCCGTGACAGCCCTGAG  579
            ||||.||||||||.||||||||||||||||||||.|||||.||||||||||||.||||.||.||.|||||.|||
Sbjct  497  AGAGTGACAGCTGTGTCAGCTTCGAGGCCCCCCTTACACCTCTCATCCAGCAGAGGGCTCGAGATAGCCCCGAG  570

Query  580  CCAGGGGCTGGGTTGGGCATTGGGGACATGGCGTTTGAGGGGGACATGGGGGCGGCTGGTG---GTGATGGGGA  650
            .|.|||||||||.||||||.|||||||||||.|..|||.|||||..|||||||..||||||   ||||||||||
Sbjct  571  GCCGGGGCTGGGCTGGGCAATGGGGACATGGGGCCTGAAGGGGATCTGGGGGCAACTGGTGGTTGTGATGGGGA  644

Query  651  GCTGGGCAGCCCCCTGCGGCGCTCCATCTCCAGCAGCCGCTCTGAGAATGTCCTGAGCCGCCTGTCTCTCATGG  724
            .||.|||||.||||||.||||.||||||||.|||||||||||.|||||||||.||||||.|||||||||||...
Sbjct  645  ACTAGGCAGTCCCCTGAGGCGGTCCATCTCTAGCAGCCGCTCAGAGAATGTCTTGAGCCACCTGTCTCTCACCT  718

Query  725  CCATGCCCAATGGATTCCATGAAGATGGCCCTCAGGGCCCAGGGGGGGATGAGGATGATGATGAGGAGGACACG  798
            |..||||||||||.||||||||||||||.|||..||||.|.||.|||   ||.|||||.||.||.|||||||||
Sbjct  719  CGGTGCCCAATGGGTTCCATGAAGATGGGCCTGGGGGCTCGGGAGGG---GACGATGAGGACGATGAGGACACG  789

Query  799  GACAAGTTGCTGAACTCAGCCAGTGACCCCAGCCTGAAGGATGGCCTGTCAGACTCAGACTCTGAGCTCAGCAG  872
            |||||||||||||||||.|||||||||.|||||||.||||||||||||||.|||||.|||||.|||||.|||||
Sbjct  790  GACAAGTTGCTGAACTCTGCCAGTGACACCAGCCTTAAGGATGGCCTGTCGGACTCGGACTCGGAGCTGAGCAG  863

Query  873  CTCGGAGGGGTTGGAGCCTGGTAGTGCAGACCCTCTGGCCAACGGGTGCCAGGGGGTCAGTGAAGCTGCTCATC  946
            |||.||||||.||||||||||.||..||||.||.||||||||||||||||||||||||||.|||||.||||...
Sbjct  864  CTCTGAGGGGCTGGAGCCTGGCAGCACAGATCCACTGGCCAACGGGTGCCAGGGGGTCAGCGAAGCCGCTCGCA  937

Query  947  GGCTGGCACGCCGTCTCTACCACCTCGAGGGCTTCCAGCGCTGTGATGTGGCCCGGCAGCTGGGCAAGAACAAC  1020
            |||||||.||.||.||||||||.||.||.||.|||||||||||||||||.||.||||||||||||||||||||.
Sbjct  938  GGCTGGCCCGACGGCTCTACCATCTTGAAGGTTTCCAGCGCTGTGATGTAGCTCGGCAGCTGGGCAAGAACAAT  1011

Query 1021  GAGTTTAGCAGGCTGGTGGCCGGGGAGTACCTCAGTTTCTTCGACTTCTCGGGCTTGACTCTGGACGGAGCACT  1094
            |||||.|||||||||||.||.|||||||||||||||||||||||||||||.|||.|.|||.|||||.|||||||
Sbjct 1012  GAGTTCAGCAGGCTGGTTGCTGGGGAGTACCTCAGTTTCTTCGACTTCTCAGGCCTCACTTTGGACAGAGCACT  1085

Query 1095  CAGAACATTCTTGAAGGCCTTCCCGCTGATGGGGGAGACACAAGAGCGTGAGCGGGTCCTCACACACTTCTCCC  1168
            ||||||.|||.|||||||||||||||||||||||||||||||.||.||.||.||.|||||.||.||||||||.|
Sbjct 1086  CAGAACCTTCCTGAAGGCCTTCCCGCTGATGGGGGAGACACAGGAACGAGAACGAGTCCTTACCCACTTCTCTC  1159

Query 1169  GCCGGTACTGCCAGTGCAACCCTGATGACAGCACTTCGGAAGATGGGATCCACACGCTCACCTGTGCCCTGATG  1242
            ||||||||||||||||.|||||.||.||||||||.||.||||||||||||||||||||||||||.|||||||||
Sbjct 1160  GCCGGTACTGCCAGTGTAACCCAGACGACAGCACATCAGAAGATGGGATCCACACGCTCACCTGCGCCCTGATG  1233

Query 1243  CTGCTCAACACGGACCTGCACGGCCAC---AACATTGGCAAAAAGATGTCCTGTCAGCAATTCATTGCCAACTT  1313
            |||||||||||.||||||||.||.|||   |||||||||||.|||||||||||.||||||||||||||||||||
Sbjct 1234  CTGCTCAACACAGACCTGCATGGACACGTGAACATTGGCAAGAAGATGTCCTGCCAGCAATTCATTGCCAACTT  1307

Query 1314  GGACCAGCTGAATGATGGCCAAGACTTTGCCAAAGACCTGCTGAAGACCCTTTACAACTCCATCAAGAATGAAA  1387
            ||||||||||||.||||||||||||||||||||||||||..|||||||.||||||||||||||||||||.||||
Sbjct 1308  GGACCAGCTGAACGATGGCCAAGACTTTGCCAAAGACCTTTTGAAGACACTTTACAACTCCATCAAGAACGAAA  1381

Query 1388  AGCTGGAATGGGCCATTGATGAGGATGAGCTGAGGAAATCCCTGTCTGAGCTGGTGGATGACAAGTTCGGGACA  1461
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.
Sbjct 1382  AGCTGGAATGGGCCATTGATGAGGATGAGCTGAGGAAATCCCTGTCTGAGCTGGTGGATGACAAGTTTGGGACG  1455

Query 1462  GGCACGAAGAAGGTGACGCGAATCCTGGATGGTGGCAACCCCTTCCTGGATGTCCCACAGGCGCTCAGTGCCAC  1535
            |||||.|||||||||||.||.|||.|||||||||||||.||.||||||||||||||.|||||.||||..||.||
Sbjct 1456  GGCACAAAGAAGGTGACTCGGATCTTGGATGGTGGCAATCCATTCCTGGATGTCCCGCAGGCTCTCAACGCTAC  1529

Query 1536  CACCTACAAGCACGGCGTCCTGACCCGGAAGACTCACGCTGACATGGATGGCAAGAGGACGCCCCGTGGGAGGC  1609
            ||||||||||||.|||||.|||||||||||||||||.||.||||||||||||||||||||.|||||||||||||
Sbjct 1530  CACCTACAAGCATGGCGTGCTGACCCGGAAGACTCATGCGGACATGGATGGCAAGAGGACACCCCGTGGGAGGC  1603

Query 1610  GTGGCTGGAAGAAATTCTACGCAGTGCTCAAAGGGACCATCCTGTACCTGCAGAAGGATGAGTACAGGCCTGAC  1683
            |||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 1604  GTGGCTGGAAGAAATTCTATGCAGTGCTCAAAGGGACCATCCTGTACCTGCAGAAGGATGAGTACAGGCTTGAC  1677

Query 1684  AAAGCTCTATCGGAGGGTGACCTGAAGAACGCCATTCGCGTGCATCACGCTCTGGCCACCAGGGCCTCTGACTA  1757
            ||.|||||.||.|||||.|||||||||||.|||||.||.|||||.||||||||||||||||||||.||||||||
Sbjct 1678  AAGGCTCTGTCTGAGGGGGACCTGAAGAATGCCATCCGTGTGCACCACGCTCTGGCCACCAGGGCTTCTGACTA  1751

Query 1758  CAGCAAGAAGTCCAACGTGCTGAAGCTTAAGACAGCCGACTGGAGGGTATTCCTCTTCCAGGCACCGAGCAAGG  1831
            |||.|||||||||||||||||.|||||.||||||||.|||||||||||.|||||||||||||||||||||||||
Sbjct 1752  CAGTAAGAAGTCCAACGTGCTCAAGCTGAAGACAGCAGACTGGAGGGTGTTCCTCTTCCAGGCACCGAGCAAGG  1825

Query 1832  AAGAAATGCTGTCCTGGATCCTCAGGATCAACCTGGTGGCAGCCATCTTCTCTGCCCCGGCCTTCCCAGCCGCT  1905
            ||||.|||.|||||||||||||.|||||||||||.||.||.|||||||||||.||.||.|||||||||||.||.
Sbjct 1826  AAGAGATGTTGTCCTGGATCCTGAGGATCAACCTAGTAGCCGCCATCTTCTCAGCACCAGCCTTCCCAGCAGCC  1899

Query 1906  GTCAGCTCCATGAAGAAGTTCTGTCGGCCCCTGCTGCCCTCCTGCACCACCCGCCTCTGCCAGGAGGAGCAACT  1979
            ||||||||||||||||||||.|||||.|||||||||||||||||.||||||||||||||||||||||||||.||
Sbjct 1900  GTCAGCTCCATGAAGAAGTTTTGTCGACCCCTGCTGCCCTCCTGTACCACCCGCCTCTGCCAGGAGGAGCAGCT  1973

Query 1980  GCGGTCTCATGAGAATAAGTTGAGGCAGCTGACTGCGGAGCTGGCCGAACACAGGTGTCACCCAGTCGAGAGGG  2053
            ||||||||||||||||||||||||||||.|||||||.||||||||.||.|||||||||||||||.|.|||||.|
Sbjct 1974  GCGGTCTCATGAGAATAAGTTGAGGCAGGTGACTGCAGAGCTGGCTGAGCACAGGTGTCACCCACTGGAGAGAG  2047

Query 2054  GCATCAAGTCCAAGGAGGCCGAGGAGTACCGGTTGAAGGAGCACTATCTCACCTTCGAGAAAAGCCGTTATGAG  2127
            ||.|||||||.|||||.||.||.||||||||..|||||||.||||||||||||||.||||||||||||||||||
Sbjct 2048  GCCTCAAGTCTAAGGAAGCAGAAGAGTACCGTCTGAAGGAACACTATCTCACCTTTGAGAAAAGCCGTTATGAG  2121

Query 2128  ACCTATATCCACCTCCTGGCTATGAAAATCAAAGTGGGCTCAGATGATCTGGAGCGGATTGAGGCCCGGCTGGC  2201
            ||||||||.|||||||||||..|||||||||||||||||||||||||.|||||||||||||||||.||||||||
Sbjct 2122  ACCTATATTCACCTCCTGGCCGTGAAAATCAAAGTGGGCTCAGATGACCTGGAGCGGATTGAGGCACGGCTGGC  2195

Query 2202  CACTCTGGAAGGGGATGACCCTTCTCTCCGGAAGACACATTCAAGCCCTGCCCTCAGCCAGGGCCA------TG  2269
            .|||.|.||||||||||||||..||||||||||.|||||.||||||||.||||||||||.||||||      ||
Sbjct 2196  TACTATAGAAGGGGATGACCCAGCTCTCCGGAAAACACACTCAAGCCCCGCCCTCAGCCTGGGCCACGGGCCTG  2269

Query 2270  TGACTGGCAGCAAAACCACAAAGGATGCCACTGGGCCTGATACT  2313
            ||||||||||||||.|||||||||||.||.|||...||||||||
Sbjct 2270  TGACTGGCAGCAAAGCCACAAAGGATACCTCTGCATCTGATACT  2313

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.