Nucleotide Global Alignment

Description

Query:
TRCN0000468126
Subject:
XR_430193.3
Aligned Length:
5291
Identities:
1159
Gaps:
4130

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGAACACAGAGCAGCCTGGCAGTGTCCAAGCAACAAGCCTCCGCTCCTCCTTCCTGCACCCTGGGGCTCCTGAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACTCACATGAGAAGGAGGGCTGTCTGAGATTCGAGGGAAACAAGCTCTCAGGACTTCCGGTCGCCATGATGGCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTGGGCGGTAAACGCGGTTAGTGCAAGCATCTGGGCCATCTTCAATGGTAAAAAAGATACAGTAAAGACATAAA  222

Query    1  ---------------ATGGAAAAAAAGGAGTGTCCAGAAAAGAGTAGCAGCAGTGAGGAAGAGCTGCCGAGACG  59
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TACCACATTTGACAAATGGAAAAAAAGGAGTGTCCAGAAAAGAGTAGCAGCAGTGAGGAAGAGCTGCCGAGACG  296

Query   60  GGACAGTGGATCCAGTAGGAACATAGATGCATCCAAACTCATTAGACTACAAGGATCACGGAAACTGTTGGTTG  133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGACAGTGGATCCAGTAGGAACATAGATGCATCCAAACTCATTAGACTACAAGGATCACGGAAACTGTTGGTTG  370

Query  134  ACAATAGCATACGGGAACTGCAATACACAAAAACTGGAATTTTTTTTCAGGCTGAGGCCTGTGTGACAAATGAT  207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ACAATAGCATACGGGAACTGCAATACACAAAAACTGGAATTTTTTTTCAGGCTGAGGCCTGTGTGACAAATGAT  444

Query  208  ACGGTATACAGGGAGCTACCCTGTGTTTCTGAGACCCTCTGTGACATCTCACATTTTTTCCAAGAAGATGATGA  281
            ||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct  445  ACGGTATACAGGGAGCTACCCTGTGTTTCTGAGACCCTTTGTGACATCTCACATTTTTTCCAAGAAGATGATGA  518

Query  282  GACAGAGGCAGAGCCATTATTGTTCCGTGCTGTTCCTGAGTGTCAACTATCTGGGGGGGACATTCCCAGTGTAT  355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GACAGAGGCAGAGCCATTATTGTTCCGTGCTGTTCCTGAGTGTCAACTATCTGGGGGGGACATTCCCAGTGTAT  592

Query  356  CAGAAGAGCAGGAATCTTCAGAGGGACAAGATTCAGGAGACATTTGCTCAGAAGAGAATCAAATAGTTTCCTCT  429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CAGAAGAGCAGGAATCTTCAGAGGGACAAGATTCAGGAGACATTTGCTCAGAAGAGAATCAAATAGTTTCCTCT  666

Query  430  TATGCTTCTAAAGTCTGTTTTGAGATCGAAGAAGATTATAAAAATCGTCAGTTTCTGGGGCCTGAAGGAAATGT  503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TATGCTTCTAAAGTCTGTTTTGAGATCGAAGAAGATTATAAAAATCGTCAGTTTCTGGGGCCTGAAGGAAATGT  740

Query  504  GGATGTTGAGTTGATTGATAAGAGCACAAACAGATACAGCGTTTGGTTCCCCACTGCTGGCTGGTATCTGTGGT  577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GGATGTTGAGTTGATTGATAAGAGCACAAACAGATACAGCGTTTGGTTCCCCACTGCTGGCTGGTATCTGTGGT  814

Query  578  CAGCCACAGGCCTCGGCTTCCTGGTAAGGGATGAGGTCACAGTGACGATTGCGTTTGGTTCCTGGAGTCAGCAC  651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CAGCCACAGGCCTCGGCTTCCTGGTAAGGGATGAGGTCACAGTGACGATTGCGTTTGGTTCCTGGAGTCAGCAC  888

Query  652  CTGGCCCTGGACCTGCAGCACCATGAACAGTGGCTGGTGGGCGGCCCCTTGTTTGATGTCACTGCAGAGCCAGA  725
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTGGCCCTGGACCTGCAGCACCATGAACAGTGGCTGGTGGGCGGCCCCTTGTTTGATGTCACTGCAGAGCCAGA  962

Query  726  GGAGGCTGTCGCCGAAATCCACCTCCCCCACTCCATCTCCCTCCAAGCAGGTGAGGTGGACGTCTCCTGGTTTC  799
            ||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGAGGCTGTCGCCGAAATCCACCTCCCCCACTTCATCTCCCTCCAAGCAGGTGAGGTGGACGTCTCCTGGTTTC  1036

Query  800  TCGTTGCCCATTTTAAGAATGAAGGGATGGTCCTGGAGCATCCAGCCCGGGTGGAGCCTTTCTATGCTGTCCTG  873
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TCGTTGCCCATTTTAAGAATGAAGGGATGGTCCTGGAGCATCCAGCCCGGGTGGAGCCTTTCTATGCTGTCCTG  1110

Query  874  GAAAGCCCCAGCTTCTCTCTGATGGGCATCCTGCTGCGGATCGCCAGTGGGACTCGCCTCTCCATCCCCATCAC  947
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GAAAGCCCCAGCTTCTCTCTGATGGGCATCCTGCTGCGGATCGCCAGTGGGACTCGCCTCTCCATCCCCATCAC  1184

Query  948  TTCCAACACATTGATCTATTATCACCCCCACCCCGAAGATATTAAGTTCCACTTGTACCTTGTCCCCAGCGACG  1021
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TTCCAACACATTGATCTATTATCACCCCCACCCCGAAGATATTAAGTTCCACTTGTACCTTGTCCCCAGCGACG  1258

Query 1022  CCTTGCTAACAAA-------------------------------------------------------------  1034
            |||||||||||||                                                             
Sbjct 1259  CCTTGCTAACAAAGACACTATTTTAGAGGCTGAGGATACATCAGTGAACAAAAGAGGCAAAAACATGACAACCA  1332

Query 1035  --------------------------------------------------------------------------  1034
                                                                                      
Sbjct 1333  AAGATATTACATGGAATGCTATAGGAAAAATATATGTGCATATGATAAGAACTATAACAAATAAAGAAGGTTAA  1406

Query 1035  ---------------GGCGATAGATGATGAGGAAGATCGCTTCCATGGTGTGCGCCTGCAGACTTCGCCCCCAA  1093
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GAAAATTAATCCAGTGGCGATAGATGATGAGGAAGATCGCTTCCATGGTGTGCGCCTGCAGACTTCGCCCCCAA  1480

Query 1094  TGGAACCCCTGAACTTTGGTTCCAGTTATATTGTGTCTAATTCTGCTAACCTGAAAGTAATGCCCAAG------  1161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct 1481  TGGAACCCCTGAACTTTGGTTCCAGTTATATTGTGTCTAATTCTGCTAACCTGAAAGTAATGCCCAAGGAGTTG  1554

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 1555  AAATTGTCCTACAGGAGCCCTGGAGAAATTCAGCACTTCTCAAAATTCTATGCTGGGCAGATGAAGGAACCCAT  1628

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 1629  TCAACTTGAGATTACTGAAAAAAGACATGGGACTTTGGTGTGGGATACTGAGGTGAAGCCAGTGGATCTCCAGC  1702

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 1703  TTGTAGCTGCATCAGCCCCTCCTCCTTTCTCAGGTGCAGCCTTTGTGAAGGAGAACCACCGGCAACTCCAAGCC  1776

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 1777  AGGATGGGGGACCTGAAAGGGGTGCTCGATGATCTCCAAGACAATGAGGTTCTTACTGAGAATGAGAAGGAGCT  1850

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 1851  GGTGGAGCAGGAAAAGACACGGCAGAGCAAGAATGAGGCCTTGCTGAGCATGGTGGAGAAGAAAGGGGACCTGG  1924

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 1925  CCCTGGACGTGCTCTTCAGAAGCATTAGTGAAAGGGACCCTTACCTCGTGTCCTATCTTAGACAGCAGAATTTG  1998

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 1999  TAAAATGAGTCAGTTAGGTAGTCTGGAAGAGAGAATCCAGCGTTCTCATTGGAAATGGATAAACAGAAATGTGA  2072

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 2073  TCATTGATTTCAGTGTTCAAGACAGAAGAAGACTGGGTAACATCTATCACACAGGCTTTCAGGACAGACTTGTA  2146

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 2147  ACCTGGCATGTACCTATTGACTGTATCCTCATGCATTTTCCTCAAGAATGTCTGAAGAAGGTAGTAATATTCCT  2220

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 2221  TTTAAATTTTTTCCAACCATTGCTTGATATATCACTATTTTATCCATTGACATGATTCTTGAAGACCCAGGATA  2294

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 2295  AAGGACATCCGGATAGGTGTGTTTATGAAGGATGGGGCCTGGAAAGGCAACTTTTCCTGATTAATGTGAAAAAT  2368

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 2369  AATTCCTATGGACACTCCGTTTGAAGTATCACCTTCTCATAACTAAAAGCAGAAAAGCTAACAAAAGCTTCTCA  2442

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 2443  GCTGAGGACACTCAAGGCATACATGATGACAGTCTTTTTTTTTTTTGTATGTTAGGACTTTAACACTTTATCTA  2516

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 2517  TGGCTACTGTTATTAGAACAATGTAAATGTATTTGCTGAAAGAGAGCACAAAAATGGGAGAAAATGCAAACATG  2590

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 2591  AGCAGAAAATATTTTCCCACTGGTGTGTAGCCTGCTACAAGGAGTTGTTGGGTTAAATGTTCATGGTCAACTCC  2664

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 2665  AAGGAATACTGAGATGAAATGTGGTAAATCAACTCCACAGAACCACCAAAAAGAAAATGAGGGTAATTCAGCTT  2738

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 2739  ATTCTGAGACAGACATTCCTGGCAATGTACCATACAAAAAATAAGCCAACTCTGACATTTGGATTCTACCATAG  2812

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 2813  ACTCTGTCATTTTGTAGCCATTTCAGCTGTCTTTTGATTAATGTTTTCGTGGCACACATATTTCCATCCTTTTA  2886

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 2887  TGTTTAATCTGTTTAAAACAAGTTCCTAGTAGACACCATCTGGTTGAGTCAGTTTTTTTTATGGTGTATTTTGA  2960

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 2961  ACCCATTCTGATAGTCTCTTTTAACTGGAAGATTTCAATTACTTACGTTAATGTAATTATTAATATGTTAGGAT  3034

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 3035  TTATCCTCAGTCAGCCAGTTTGTTATGTCTTTTCTATTCTACTGTTATCACATTTGTACCACTTAAAGTGGAAT  3108

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 3109  CTAGGCACTTTATCACCATTTAGATCCTATTACCTTTTCTCATCTAGGATATAGTTATCTTCTACATAATCTTT  3182

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 3183  CTGTATCTTAAAACCCATCAATAAATTATTATATATTTTCTACTTTTAATCACTCAGAAGATTTAAAAAACTCA  3256

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 3257  TGAGAAGAGTAATCTGTTATGTTTTTCCAGATATTTACCATTTCTGTTGCTCTTCCTTCATTATTTTCCAAATT  3330

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 3331  TCGTTCTGCAAATTTCCACTTCCTCTGATAGACGTTTTTTAGTTCTTTTAGAGTGGTTCTGATAGGTACAGATT  3404

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 3405  CTCTTATTTTTTGCTTCCTCTGAGGACATCTTTTTCTCACCTTCATTCTCAGTGATGTTTTTTGCTTGTAGTAT  3478

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 3479  TTTTAGTTGACATTGTTTTCTGTTCAGCAGTTTCCTTTTAGCTTCCGTATTTCCTGATGAGAAATCTGCAGTCA  3552

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 3553  TTCAAATTGTTGTTTCCCTGTATGTAGTGTGTCATTTTTCTGTCAGATTTCAAGGTATTTATCTTTAGTTTTTA  3626

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 3627  GCCATTTCATTATGTTGGGGATGAGTTTCCTTGTTTTATTCCCTTTGGAATTTGCTCCAATTCATAAATTTGCA  3700

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 3701  GTTTTATGTCTTTTACCAAACTTAGAGGTTTTCAGCCTAATTTCTAAAAATACTTTTTATTAGCCTGATTTTCA  3774

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 3775  TCTTTATAGGAAATAGTTTAAGTGATGACAAGTTCCAATAGCTTATATGCCCAGAAGGCCTTCAAAATAAGAAT  3848

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 3849  TTTGAAAGAATACAGAAAACAAACTTTTATATCCTTCTCATGTCTTCTACTGTAAAATTCATATGCTTTGCTAC  3922

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 3923  TCTAAACCTAGTTTGAAATCAACAGTCTTGAGAATAGATGAAAATTTTGATGAATAGTGGAATTCTTTTAAATG  3996

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 3997  GAAACCTCTTACATGTGATTTTCCTTGCCATCTAGAAATAAACCATAGTATTTATGTTGAATCAATCAATATTA  4070

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 4071  TATTTTGTTTTTTTCCTCCTCTTCTGAGACTCTTATTGTGGAAATGTTAGACTTTTATGTTTTCCTAAATGTCC  4144

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 4145  CTGATATTCTACTTATTTAGAACATCTTTTCATTTTTTCCATTATTCTGATTGGGTAATTTTAATTTGTCTATT  4218

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 4219  TTCAAATTTGCTGGAGTGTTCACCTGTTGTTATCTGTGTCGTCCCACTGAGTGCATTCACCACCTTTTAAATTT  4292

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 4293  TGGTCACTGTATGTATCAGTTCTAAAATTTCCATTTTGTTCTCTATATTTTAAATTTCTTGCCTTATATTCTAT  4366

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 4367  TTTCCTGCAAATGTGTCAGCATTTGCTTGTTTGAGCTTTTTTTTTTTCAAGACAGGGTCTCAACTCTGTTACCC  4440

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 4441  AGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTGCAACCTCTGCCTCCTGGTTCAAGCGATTATTGTGCCTCA  4514

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 4515  GCCTCCAGAGTAGCTGGGATTACAGGCATGCACCACCACAGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACA  4588

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 4589  GAGTTTTGCTATGTTGGCCAGGCTGGTTTTGAACTCCTGGCCTCAAGTGATCCACCCACCTCAGCCTCCCAAAG  4662

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 4663  TGCTGGGATTACAGGCCACTACACCTGGCACATTTGAGTATTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAG  4736

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 4737  TCTCGCTCTGTCATCTAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAGCCTCTGTCTCCCGGGCTCAA  4810

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 4811  GCGATTCTCTTGCCTCAGCCTCCTGAGTAGCTAGGACTACAGGTGCATGCCAACACGCCCGGCTAATTTTTTTT  4884

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 4885  TAAAAATATTTTTAGTAGAGACAGGGTTTCACCATTTTGGCCAGGATGGTCTTGATCTCCTGACCTCATGATCC  4958

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 4959  ACCCGCCTCGGCCTTCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCTGGCCTCATTTGAGTATTTTTA  5032

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 5033  TAATGTCTCTTTTAAAGTCTTTGTCAGATAATTTCACTGTACATGTTATTCAGTGTTTGGTGTCCACTGAGTTG  5106

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 5107  TCATTTGCCAGACAAGTGGAGATTTTTGCAGCTCATCCTTGTATTCTCAGTAGTTCCGATATGTACCCTCGAAA  5180

Query 1162  --------------------------------------------------------------------------  1161
                                                                                      
Sbjct 5181  TGTGAATGTTATCTTATGAGACTCTGTTTTATTTGTATCCAACAGAAGATGTTTATTATTTATTTGGCTTTCTG  5254

Query 1162  -------------------------------------  1161
                                                 
Sbjct 5255  TGAACTGAGGTCTTAATATCAGCTCATTTTAAAAGTC  5291

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