Nucleotide Global Alignment

Description

Query:
TRCN0000468185
Subject:
XR_001743199.1
Aligned Length:
4232
Identities:
1011
Gaps:
3196

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGAGCCGGGGCTCTGCGCGAGCGAGGGACGACGGAAGGGACGGGCAGGTGTGGGCGCGGGGCCACGCAGCCCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACGGCGGGAGTCGCAGGTGCTGGGTGCATGGGCCAGTGAGGACGCACAGAGATCCCTCGCCGCGCGGAGGAGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCAGCGCGGGAGCCAGGCGCTGCCCCAAGACCCTGCCTGCGTCCGAGCGAGCGGAACCTCGCGCTTCGCCCGGG  222

Query    1  --------------------ATGGAAGAGGAGAAATATTTGCCTGAGCTGATGGCAGAGAAAGATAGCCTGGAT  54
                                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GACAATCCGAAGTCCGCGCTATGGAAGAGGAGAAATATTTGCCTGAGCTGATGGCAGAGAAAGATAGCCTGGAT  296

Query   55  CCATCTTTTGTGCATGCGTCGCGCCTTTTGGCAGAAGAAATTGAAAAGTTTCAAGGTTCTGATGGAAAAAAGGA  128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CCATCTTTTGTGCATGCGTCGCGCCTTTTGGCAGAAGAAATTGAAAAGTTTCAAGGTTCTGATGGAAAAAAGGA  370

Query  129  AGACGAAGAAAAGAAGTATCTTGATGTCATCAGCAACAAAAACATAAAGCTCTCAGAAAGAGTACTGATTCCTG  202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGACGAAGAAAAGAAGTATCTTGATGTCATCAGCAACAAAAACATAAAGCTCTCAGAAAGAGTACTGATTCCTG  444

Query  203  TCAAGCAGTATCCAAAGTTCAATTTTGTGGGGAAATTGCTTGGACCAAGAGGAAACTCCTTGAAGAGGCTACAG  276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCAAGCAGTATCCAAAGTTCAATTTTGTGGGGAAATTGCTTGGACCAAGAGGAAACTCCTTGAAGAGGCTACAG  518

Query  277  GAAGAAACAGGTGCTAAAATGTCTATCCTGGGCAAAGGATCAATGAGAGATAAAGCTAAGGAAGAAGAACTAAG  350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GAAGAAACAGGTGCTAAAATGTCTATCCTGGGCAAAGGATCAATGAGAGATAAAGCTAAGGAAGAAGAACTAAG  592

Query  351  GAAGAGTGGGGAAGCCAAATATGCCCACTTGAGTGATGAGCTTCATGTATTAATTGAAGTGTTTGCTCCACCTG  424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GAAGAGTGGGGAAGCCAAATATGCCCACTTGAGTGATGAGCTTCATGTATTAATTGAAGTGTTTGCTCCACCTG  666

Query  425  GGGAAGCTTATTCACGTATGAGTCATGCATTGGAAGAGATTAAAAAATTCCTGGTTCCTGACTACAATGATGAA  498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGGAAGCTTATTCACGTATGAGTCATGCATTGGAAGAGATTAAAAAATTCCTGGTTCCTGACTACAATGATGAA  740

Query  499  ATTCGTCAGGAACAACTACGTGAATTATCTTACTTAAATGGCTCAGAGGACTCTGGTCGTGGCAGAGGTATTAG  572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ATTCGTCAGGAACAACTACGTGAATTATCTTACTTAAATGGCTCAGAGGACTCTGGTCGTGGCAGAGGTATTAG  814

Query  573  AGGCAGAGGGATCAGAATAGCTCCCACAGCTCCTTCAAGGGGCCGTGGGGGTGCCATTCCTCCTCCCCCACCAC  646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGGCAGAGGGATCAGAATAGCTCCCACAGCTCCTTCAAGGGGCCGTGGGGGTGCCATTCCTCCTCCCCCACCAC  888

Query  647  CTGGACGAGGTGTTCTCACCCCTCGGGGAAGCACTGTAACCCGTGGAGCGCTTCCAGTGCCACCTGTAGCAAGA  720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTGGACGAGGTGTTCTCACCCCTCGGGGAAGCACTGTAACCCGTGGAGCGCTTCCAGTGCCACCTGTAGCAAGA  962

Query  721  GGTGTCCCTACCCCTCGAGCCCGGGGGGCACCAACAGTGCCAGGATACAGGGCACCTCCTCCTCCAGCCCATGA  794
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGTGTCCCTACCCCTCGAGCCCGGGGGGCACCAACAGTGCCAGGATACAGGGCACCTCCTCCTCCAGCCCATGA  1036

Query  795  AGCTTATGAAGAATAT----------------------------------------------------------  810
            ||||||||||||||||                                                          
Sbjct 1037  AGCTTATGAAGAATATCCATCATTACCACTTTCCTTGTTTTTTGATACGGTGGCAAAATCTCACCAGCATTGTG  1110

Query  811  --------------------------------------------------------------------------  810
                                                                                      
Sbjct 1111  ATAACGAAGTACCACAAACTGGTTCAACCAGACTTAACCCAGGACGAAGCTTTTTTTACTGGCATGGAGGTGGG  1184

Query  811  --------------------------------------------GGTTATGATGATGGCTACGGGGGTGAATAT  840
                                                        ||||||||||||||||||||||||||||||
Sbjct 1185  AGTGGGACTGAGTTGTTCATCAGGATTCTGAACAATAATAAGAGGGTTATGATGATGGCTACGGGGGTGAATAT  1258

Query  841  GATGACCAGACCTATGAGACTTATGATAACAGCTACGCGACCCAAACACAAAG-------------TGTG---C  898
            |||||||||||||||||||||||||||||||||||.|||||||||||||||||             ||||   .
Sbjct 1259  GATGACCAGACCTATGAGACTTATGATAACAGCTATGCGACCCAAACACAAAGAACTTACAGAGTTTGTGGTCA  1332

Query  899  CTGAATAC-TATGACTACGG---TCATGG-AGTAAG-TGAGGATGCCTAT-GACAGC----TAC----------  951
            .||||..| ||.||  |.||   |.|||| |  ||| |||.||.|   || ||||||    |||          
Sbjct 1333  ATGAAGGCTTAGGA--ATGGACCTGATGGCA--AAGATGAAGAAG---ATAGACAGCCAAATACTAGATCATCA  1399

Query  952  --------GC-----ACC-----AGAAG---AATGGGCCACAA-------------------------------  973
                    ||     |||     |||||   ||||.| |||||                               
Sbjct 1400  CTTTGAATGCCTTCTACCAACTGAGAAGGTAAATGTG-CACAAGCCCAGGATGAGGAGATTATTCTTAAACGGG  1472

Query  974  ---------------------CCAGCT--------------------CTAGCTT------GAAGGCACCA----  996
                                 |||.||                    |||.|||      ||.|||| ||    
Sbjct 1473  AAAGGATCTTAATTTACACTCCCATCTCTGCACACATCCCATGTGTCCTAACTTAGTCACGAGGGCA-CATCTA  1545

Query  997  -CCGCAAAGGT----CAGCCAG-----AGGG-GGATAC------AGGGAACACCC-------------------  1034
             |.|.||.|||    ||.|.||     |||| |.||.|      ||.|  ||.||                   
Sbjct 1546  GCTGAAAGGGTGGCACATCTAGCTGAAAGGGTGTATTCACTATTAGTG--CAGCCATTTGTCCAAGTAAACATT  1617

Query 1035  ---CTATGGTAGATAT----------------------------------------------------------  1047
               ||||||.|||.||                                                          
Sbjct 1618  TATCTATGGAAGAAATGAGAAGTTATATTTTAATAATCTAAGGTATAGACTGTGGCAGAGTCCATTTTGATTAT  1691

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 1692  TATACATCATTTTCCATTATCTTCCATTATTTTACAAATATCTAGTATGCTCTGTTCTCCCTTGTTTAGAGTTC  1765

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 1766  TGAAAGTTAAAATTCCCTCTTGCTGTGTATGTATCACTTATGATAGACAATAACTGTGCTTCTTTATCATATTC  1839

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 1840  TCTCCCACTACTGTTCTTTTTCTGTCTCTTATCTTAAGCAATTAAAATAAAAAGTGAGAAACATATTAATACCA  1913

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 1914  CTTGATGCTGTTATAGTGCTACATAGCACACTTTGGGGAACATGATCGGGGCTTACTCATAGAAAATGTATTGA  1987

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 1988  TGATGACAAGGGAAGGAGAAGCTTCCCTTAATGCCAGCATTTTCCTCTATGCTGCTATAAGTGGGACTGCTGCT  2061

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 2062  TGTTAAATTATTTTCTCATGAAGTCCACCTCTTAATCATTTAAGGAATCAATTTAACAACTCTCAGGAATTTGC  2135

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 2136  TACCCCTATATGAGGACTCTGAGTTGGGTTGCATCATTTTTATCATGTCAAGTATGTGAAAGAAGAGATACACA  2209

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 2210  TCCAGATTCCAGCCAATGCCATTAGCCTTCTACAATCTCAAGTCATTCGAAGGATGAAGAGAACACATTACCAT  2283

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 2284  AATTTTTTAGACAGTTTGAATGTAAACATGTTGGGCAGTGAGGGCTGAGCTAGGCAATCATTTTTTCGGCTTCT  2357

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 2358  TTACACTTATGTTGAAGTTTATGCATTATAAATTGCCTCCAAGGAAGATAAGGATGACCAAAGTTCTCTCTGCC  2431

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 2432  CCTCTTTTTATCTCTGATATATAGACTTTTCTTTTCTTTTTCTGCTTCTCTTGCTTTACTATCAATAAAATCAA  2505

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 2506  AAGTACTTAAAATAATGAGACCTATGGAATTGCTTTGTGGGATAATAATAACCACATTCAGAGAACATCTAATT  2579

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 2580  TTAGGCCCTTCTGTCGTTCCTTCCATCCTAACCCTTTGGCATCTATCCCCTACCCTCAGCCCTTATATGATTTG  2653

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 2654  GTTTTTGATATTCAGCCATTGTCTTGATACACTTTTATATAGTTAAAATGAATTACTGACCTTGAGGTAACTTA  2727

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 2728  TAAATTAAGAATTATATAGGGGGGCAATGCTTGACATCTAACTTTAAACCAAGAAGTGTATTTGAAGGAAAATA  2801

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 2802  TAATGTATCATCAATATTTATAGATCCCTCAGTAAGATTAAAAATACATGAATTAGCCCAATAATAATTAAATT  2875

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 2876  AAATTAAATTTCTCTTTTGCATGTTATTTTTTTAAATTGTGACGTGGTTTTATTAGGCTACTCAATTAAATGGT  2949

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 2950  GTCTGGGCTTCCTATGAGTAATTTATTCTATTGTCCTATAAATATTCATTGAGCAGCTCTTATGTGCCAAACTT  3023

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 3024  TGTTCTAGAAAATCTGCTTGGAACAACGACAGCAAATGAATAAATGAAATAAATGAGAGACCAATTTTCTATAA  3097

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 3098  CAAGAAGTTTATATTCTAGAAGAGGGGAACAGCCAATAAATAAATAAGCAAATGGGTGTTTGTGTGTTTGTTTA  3171

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 3172  TATAATATGTATGGTGATGATCAATGAATGCTAAGGTGAGCAAAGCAAGGTAGGTGGTCCCTGGTCTAAATAGA  3245

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 3246  CTGATCAGGGAAATCTCTCATAAGTGACATTTGAGTGAGCTCTGAAAGAATGGGAAAAGGGACAATTGGACATT  3319

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 3320  TAGAGAAAGCCTGTTTCAGGTAGGAGAAACAGCAAATGAAAAAGCCCTGAGGCAGTAATGTGTTTGTAATGTTC  3393

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 3394  AGAGAACATCTAGGAGGCCATGCCCCCTGAGTAGGGTGAGTGAGCAAGGAGAAAGTGTTAGAGCATGAGGTCTG  3467

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 3468  AGAAATACAAGGGGGGGACAAATGGTGTAAGCAAAATAAGAATTTTTTATTTTTCTCCTAAAGACTATGGGGAA  3541

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 3542  GCTATTTGTGAATTTTGAGTAGGGAGCTAATATGATCTAACTTACTTCTATAAGAATGACTTTGACTGCTACAT  3615

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 3616  CGATAATAGAAACAGAGCAATCAGGGCCTAGAAACCACTTAGAAGGATAGCATACTCATTTAAATGAGAGATAG  3689

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 3690  TAATAACTTTAACTCAGTGATAGCTGTGGATATGTTTAGACGTGTTCAGATTCTGGATATATTTTGCAATTCGA  3763

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 3764  AGTGAATTTGCTATTAGATAGAACATTAGGACCAGATGAGACTGCCTAGGGAGTAAGTATGAATAGAAAAGAGA  3837

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 3838  AACATTCAACTGAGCCCTAGTGGTCTCCAGGAATAAGTGATTGGAAAAATGAGAAGGTAACCATAGGGAAAAAT  3911

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 3912  GAAGAAATGAAGTGCACTTGAAGACCCATGAAAGAGGAGATATCTGAAGCAAGTGAAATGTTTGCAGAATCATG  3985

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 3986  AAATAATCAACTGTGTTAAATGGTGCTAAAGTAAAATGAACACTAAGTCTTGACCATTGAATGTGAAAATGTTA  4059

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 4060  AGATCTTGTCAAGAGCTGTTTCAGTGGAGCAGTGGAACGACAGCCTGATTGTCTTCAAATGCCTATGGAGAAGA  4133

Query 1048  --------------------------------------------------------------------------  1047
                                                                                      
Sbjct 4134  GTCAGTGAAAAGATGTGCCTGAATACTATGACTACGGTCATGGAGTAAGTGAGGATGCCTATGACAGCTACGCA  4207

Query 1048  --------------  1047
                          
Sbjct 4208  CCAGAAGAATGGGC  4221

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