Nucleotide Global Alignment
Description
- Query:
- TRCN0000469026
- Subject:
- XM_006507179.3
- Aligned Length:
- 2919
- Identities:
- 1148
- Gaps:
- 1632
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGGCGCACCTGAAAAAGCGGGTGTATGAGGAGTTCACTAAAGTGGTTCAGCAGCAGGAGGAAATTGCTAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAAGAAGCTCCGATTAACAAAGCCGAGCAAATCTGCCGCTCTCCACATAGATCTGTGTAAAGCCACCTCCCCAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAGATGCTTTGCAGTACCTACTCCAGTTTGCCAGAAAGCCTGTAGAAGCAGAGAGTGTGGAGGGGGTAGTCAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATTCTCTTGGAACATTATTACAAGGAAAATGATCCATCTGTGAGACTGAAAATTGCATCACTCTTGGGATTATT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATCAAAGACGGCAGGATTCTCTCCAGACTGCATAATGGACGACGCCATTAACATACTACAGAATGAAAAGTCTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACCAAGTGCTAGCTCAACTACTGGACACTTTGCTTGCAATTGGCAGTAAACTACCAGAAAATCAAGCTACCCAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGCGATTAGTGGATGTGGCCTGCAAGCACCTGACAGATACTTCCCATGGTGTAAGAAATAAGTGCTTGCAATT 518
Query 1 ------------------------------------------------ATG--CAGCGGCCGCTGAGGGTGGCG 24
|.| ||||.||| ||.|..|..
Sbjct 519 ACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATACTGAAGGCTCAGCTGCC----AGAGATGTT 588
Query 25 CA----------GGGGCCCCGGCCAG-----------CCCGGGGCTG--CAGCAG---------------TGCG 60
|| ||||.||....||| |.||||.|.| |||||| ||
Sbjct 589 CAGAAAATTATCGGGGACCACTTCAGTGACCAAGATCCACGGGTCAGAACAGCAGCTATAAAAGCCATGTTG-- 660
Query 61 GACAGCTCCA------------GAAGCT-CATC----------------GGCATCTCCATTG------GCAGCC 99
|||||||| ||||.| ||.| |||.|.|..|||| |..|.|
Sbjct 661 --CAGCTCCATGAAAGAGGACTGAAGTTACACCAAACGATTTATAATCAGGCCTGTAAATTGCTCTCTGATGAC 732
Query 100 TGCGCGGGCTGGGCACCAAGTGCGCTGT------GTCCAAC--------GACCTCACCGAGCAGGAGATACGGA 159
|.|| |.||.||||||.|| |||||.| |...|||.|.||| ...|
Sbjct 733 TACG----------AGCAGGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTTGTCAGCCAGC--------TCTA 788
Query 160 CCCTG-GAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGAAAAATTT 232
.|||| |||.||.||.|||||.||.|||||||||||||||||.||..|||||||||||||.|||||||||||||
Sbjct 789 TCCTGAGAGTATAGTTCCAATACCGTCTTCTAATGAAGAAATCCGTCTAGTTGATGATGCATTTGGAAAAATTT 862
Query 233 GTCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTC 306
|.||||||||||||||||||||.||||||||||.||||||.||.|||||.||.||||||||.|||||||||||.
Sbjct 863 GCCACATGGTCAGTGATGGCTCCTGGGTGGTTCGTGTTCAAGCTGCAAAGCTATTGGGCTCGATGGAGCAAGTT 936
Query 307 AGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGA 380
||.||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 937 AGCTCTCATTTCTTGGAGCAGACTCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGCACTGCACATGA 1010
Query 381 GCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTGGGAAGATGATGCTCCCAAGGAAG 454
||||||||||||||||||||||||.||||||||||||||||||||.||.||||.||||||||||||||||||||
Sbjct 1011 GCGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGGAAATGGGGAGATGATGCTCCCAAGGAAG 1084
Query 455 AAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAG 528
||.||||.||.|||||.||||||.||||.|||||||||||.||||||||.||||||||||||||||||||||||
Sbjct 1085 AAATAGACACGGGGGCCGTGAACCTGATAGAGTCAGGAGCGTGTGGAGCCTTTGTTCATGGGTTGGAAGATGAG 1158
Query 529 ATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAA 602
||||||||||||||.|||||||||||||||||.||.||||||.|.|||||||||||.||||||||||||||.||
Sbjct 1159 ATGTATGAGGTTCGCATTGCTGCTGTGGAGGCTCTGTGCATGCTAGCCCAGTCTTCGCCCTCTTTTGCTGAAAA 1232
Query 603 GTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCCATACATACCATGA 676
|||||||||.||.|||||||||||||||||.|||||||||||||||||.|||||||||||||||||.|||||||
Sbjct 1233 GTGCCTTGACTTTCTAGTTGACATGTTCAATGATGAAATTGAGGAAGTGCGTCTGCAGTCCATACACACCATGA 1306
Query 677 GAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCAGCC 750
||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||.|||||||||||.||
Sbjct 1307 GAAAAATCTCTAACAATATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGTTAGAGGATTCATCC 1380
Query 751 AGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGC 824
||.||||||.||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||||||||
Sbjct 1381 AGGGATATTAGAGAGGCTCTTCATGAACTCTTATGCTGCACTAATGTCTCAACCAAAGAAGGGATTCATCTTGC 1454
Query 825 ATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTC 898
|.||||||||||.||.|||||..|||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 1455 ACTGGTGGAGCTTCTAAAAAACCTAACCAAGTACCCTACTGACAGGGACTCCATATGGAAGTGCTTGAAGTTTC 1528
Query 899 TGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACA 972
||||.||.||||||||.|||||.||||||||..|||||||||||||..|||||||.||||||||||||||.||.
Sbjct 1529 TGGGCAGCCGGCATCCGACCCTCGTGCTTCCTCTGGTGCCAGAGCTCTTGAGCACGCACCCATTTTTTGATACT 1602
Query 973 GCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCC 1046
|||||||||||||||||.|||||||||||.|||||||||||.||.|||||.||||||||||||||.||||||||
Sbjct 1603 GCTGAACCAGACATGGACGATCCAGCTTACATTGCAGTTTTAGTTCTTATCTTCAATGCTGCTAAGACCTGTCC 1676
Query 1047 AACAATGCGAGCATTGTTCTCAGATCACACCGTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTG 1120
.|||||||.||||.|.||||||||.||||||.||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1677 TACAATGCCAGCACTCTTCTCAGACCACACCCTCAGGCACTATGCCTACCTCCGAGACAGCCTTTCTCATCTTG 1750
Query 1121 TTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCC----AGCATCATACCTCAAGA 1190
||||||||||||||||||||||.||||||||||||||.||..||| |||| |.|||||..|||||.||
Sbjct 1751 TTCCTGCCTTGAGGTTACCAGGGAGAAAACTGGTGTCCTCCACTG----TCCCCTCTAACATCACCCCTCATGA 1820
Query 1191 GGATCCTTCGCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAG 1264
.||||||||.|||||||||||||||||||||||||||||.|||||||||.||||||||.|.||.||||||||.|
Sbjct 1821 AGATCCTTCCCAGCAGTTCCTGCAGCAGAGCCTTGAAAGGGTGTATAGTGTTCAGCACCTAGATCCTCAGGGGG 1894
Query 1265 CCCAGGAGCTGCTGGAATTCACCATC------------------------------------------------ 1290
||||.|||||||||||||||||||||
Sbjct 1895 CCCAAGAGCTGCTGGAATTCACCATCAGAGATCTGCAAAGACTTGGAGAGCTTCAGTCTGAATTGGCAGGAGTA 1968
Query 1291 ----------------------------------------------AGGCCTTGCAGGAAAAGTCGTGGAATG- 1317
|||||||||||||||||..||||||||
Sbjct 1969 GCTGACTTCTCTGCCACCTATCTTCAGTGTCAACTGCTCCTCATTAAGGCCTTGCAGGAAAAGCTGTGGAATGT 2042
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2043 GGCTGCCCCCTTGTATCTAAAGCAGAGTGATTTGGCCTCAGCAGCAGCAAAACAGATCATGGAGGAAACCTACA 2116
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2117 AAATGGAGTTTATGTACAGTGGTGTGGAAAACAAGCAGGTTGTGATCATACAGCACATGAGGCTTCAGGCCAAA 2190
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2191 GCTCTGCAACTCATAGTAACTGCACGAACTACTCGAGGAGTAGACCCCTTATTTGGAATGTGTGAAAAATTTTT 2264
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2265 ACAGGAAGTGGATTTTTTTCAGAGGTGTTTCATTGCGGATTTGCCCCACCTTCAAGATAGCTTTGTGGACAAAC 2338
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2339 TCCTTGATCTTATGCCCCGACTCATGGCATCTAAACCTGTTGAAGTGATCAAAATTCTGCAGACAATGCTGCGG 2412
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2413 CAGAGCACCTTCTTACATCTTCCGCTTCCAGAGCAGATACACAAAGCCTCAGCCACCATTATTGAGCCGGCAGG 2486
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2487 AGAGTCAGACAATCCTTTGCGGTTTACATCTGGGTTGGTGGTAGCCTTGGATGTGGATGCAACCCTGGAACATG 2560
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2561 TGCAAGACCCCCAGAACACTGTCAAGGTTCAGGTCTTATATCCAGATGGCCAGGCTCAGATGATCCACCCCAAG 2634
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2635 CCAGCAGATTTCCGGAATCCTGGCCCAGGACGGCACCGTCTCCTCACTCAGGTGTACCTCTCCCATACTGCCTG 2708
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2709 GACAGAACCATGCCAAGTGGAAGTGAGGCTATTGCTGGCCTACAACTCCGGTGCACGAATTCCAAAATCTCCAT 2782
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2783 GGCTGGAGGGTAGTGAGATGTCACCACAGGTGGAAACCAGCATCGAGGGCACCATCCCCTTCAGTAAGCCTGTG 2856
Query 1318 --------------------------------- 1317
Sbjct 2857 AAAGTCTACATAATGCCCAAGCCTGCAAGACGC 2889
