Nucleotide Global Alignment
Description
- Query:
- TRCN0000469026
- Subject:
- XR_002957208.1
- Aligned Length:
- 5284
- Identities:
- 1248
- Gaps:
- 3992
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCTGAGAGGGCCCGCGGGTAGGCATGGCGGCGCACCTTAAGAAGCGGGTTTATGAGGAATTCACGAAAGTGGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCAGCCACAGGAGGAAATTGCTACTAAGAAACTCCGACTAACAAAACCAAGTAAATCTGCAGCACTCCACATAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCTGTGTAAAGCTACCTCCCCAGCAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAAAGCGTAGAGGGAGTAGTCAGGATTCTCTTGGAACATTATTACAAGGAGAATGATCCATCTGTGAGACTGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AATTGCATCATTGTTGGGTTTATTATCAAAGACAGCAGGATTTTCACCAGACTGCATTATGGATGATGCCATCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACATCCTGCAGAATGAAAAGTCTCATCAAGTCCTAGCTCAACTGCTGGATACTTTGCTTGCAATTGGCACTAAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACCAGAGAATCAAGCTATCCAAATGCGATTAGTTGATGTGGCCTGCAAGCATCTGACAGATACGTCTCATGG 518
Query 1 -----------------------------------------------------------------ATGCAG-CG 8
|||||| .|
Sbjct 519 TGTAAGAAATAAGTGCCTGCAGTTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAG 592
Query 9 GCC--GCTG----------------------AGGGTGGCG-------CAGGGGCCCCGGCCAGCCCGGGGCTGC 51
||| |||| |||| | |||.|.||..|.|| |.||.|.|.|
Sbjct 593 GCCTAGCTGCCAGAGATGTCCAGAAGATTATAGGG----GATTACTTCAGTGACCAAGACC--CACGTGTCAG- 659
Query 52 AGCAGTGCGGACAGCTCCAGAAGCTCATCG--GCATCTCCAT----------TGGCA----------------- 96
|.||| |||||..|.|||| ||| | |||.|||||| ||..|
Sbjct 660 AACAG------CAGCTATAAAAGC-CAT-GTTGCAGCTCCATGAAAGAGGACTGAAATTACACCAAACAATTTA 725
Query 97 -------GCCTG-------CGCGGGCTGGGCAC------CAAGTGCGCTGT------GTCCAAC--------GA 136
||||| |.| .|||...|| |||||||||.|| |||||.| |.
Sbjct 726 TAATCAGGCCTGTAAATTACTC--TCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGT 797
Query 137 CCTCACCGAGCAGGAGATACGGACCCTG-GAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGT 209
|.|||...||| ...|.|||| .||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 CGTCAGTCAGC--------TCTATCCTGAAAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGT 863
Query 210 TGATGATGCGTTTGGAAAAATTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAAC 283
|||||||||||||||.||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 864 TGATGATGCGTTTGGCAAAATTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAAC 937
Query 284 TGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 TGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTG 1011
Query 358 AGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTG 431
|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 1012 AGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTG 1085
Query 432 GGAAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTT 505
||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GGGAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTT 1159
Query 506 TTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAG 1233
Query 580 TCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACG 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 TCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACG 1307
Query 654 TCTGCAGTCCATACATACCATGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCC 727
|||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 TCTGCAGTCTATACATACCATGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCC 1381
Query 728 TGGCTGTGCTAGAGGATTCAGCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCA 801
||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TGGCTGTGCTAGAGGATTCATCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCA 1455
Query 802 ACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTC 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 ACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTC 1529
Query 876 CATATGGAAGTGCTTGAAGTTTCTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGA 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 CATATGGAAGTGCTTGAAGTTTCTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGA 1603
Query 950 GCACCCACCCATTTTTTGACACAGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATT 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 GCACCCACCCATTTTTTGACACAGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATT 1677
Query 1024 TTCAATGCTGCTAAAACCTGTCCAACAATGCGAGCATTGTTCTCAGATCACACCGTCAGGCACTATGCCTACCT 1097
|||||||||||||||||||||||||||||||.||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1678 TTCAATGCTGCTAAAACCTGTCCAACAATGCCAGCATTGTTCTCAGATCACACCTTCAGGCACTATGCCTACCT 1751
Query 1098 CCGAGACAGTCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTC 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752 CCGAGACAGTCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTC 1825
Query 1172 CCAGCATCATACCTCAAGAGGATCCTTCGCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAG 1245
||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1826 CCAGCATCATACCTCAAGAGGATCCTTCCCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAG 1899
Query 1246 CACTTGGACCCTCAGGGAGCCCAGGAGCTGCTGGAATTCACCATC----------------------------- 1290
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900 CACTTGGACCCTCAGGGAGCCCAGGAGCTGCTGGAATTCACCATCAGGGATCTGCAAAGACTTGGAGAACTTCA 1973
Query 1291 -----------------------------------------------------------------AGGCCTTGC 1299
|||||||||
Sbjct 1974 ATCTGAATTGGCAGGAGTAGCTGATTTCTCTGCCACCTATCTTCGCTGTCAACTACTTCTCATCAAGGCCTTGC 2047
Query 1300 AGGAAAAGTCGTGGAATG-------------------------------------------------------- 1317
|||||||||.||||||||
Sbjct 2048 AGGAAAAGTTGTGGAATGTAGCTGCCCCTTTGTATTTGAAGCAGAGTGATTTGGCCTCAGCAGCAGCGAAACAG 2121
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2122 ATTATGGAAGAGACCTACAAAATGGAATTCATGTACAGTGGTGTGGAGAATAAGCAGGTGGTGATTATACATCA 2195
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2196 CATGAGGCTGCAGGCCAAAGCTTTGCAACTTATAGTAACAGCACGAACTACACGAGGGACAGCTTTGTGGACAA 2269
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2270 ACTCCTTGACCTTATGCCCCGACTCATGACATCCAAACCTGCAGAAGTGGTCAAAATTCTACAGACCATGCTGC 2343
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2344 GACAGAGTGCCTTTCTGCATCTCCCGCTTCCAGAGCAGATCCACAAAGCCTCAGCCACCATCATCGAGCCAGCG 2417
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2418 GGCGAGTCAGACAACCCTTTGCGGTTTACCTCTGGGTTGGTGGTTGCCCTGGATGTTGATGCAACCCTGGAGCA 2491
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2492 TGTGCAGGATCCTCAGAACACTGTTAAGGTCCAGGTCTTATATCCAGATGGCCAGGCTCAGATGATTCACCCCA 2565
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2566 AGCCTGCAGACTTCCGGAATCCTGGCCCAGGGCGGCACCGGCTCATCACTCAGGTTTATCTCTCCCACACCGCT 2639
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2640 TGGACAGGATGTGCCATGAAGCTGTAGCCAGGTGGAATTGTACCACAGCCCTGACATGAACACCTGATGGCAGC 2713
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2714 TGCTGGGTTGGAGCCTAGACAAAAACATGAAGAACCATGGCTGCTGCCTGAGCCCATCGTGCTGTAATTATAGA 2787
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2788 AAACCTTCTAAGGGAAGAATATGCTGATATTTTTCAGATAAGTACCCCTTTTATAAAAATCCTCCAAGTTAGCC 2861
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2862 CTCATTTTCCATGTAAGGAAACAGAGGCTTTGAGATAATGTCTGTCTCCTAAGGGACAAAGCCAGGACTTGATC 2935
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2936 CTGTCTTAAAAATGCAAAATGTAGTACTTCTTCCATCAAAGGTAGACATGCACTAAGGGACAGGTTTTGGCTTG 3009
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3010 GTATCAGAATACATTTTTAAAAGCTGTGTAAGAATTGAACGGGCTGTACTAGGGGGTATAGAATTCTCCAGGCT 3083
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3084 AGATGAGTTTGGGCAGAGGTTGAACAAGCTCCTGACAAATTTGTTGCTAAGCAATTCAAGTATCGTATCGGGGT 3157
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3158 TGGGCTCAACTTTTTAAATTGCTTTTACCCTGAATTTTCACGTTCTGGGGAACATGAGAATTTTAGTTTTTCTC 3231
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3232 TATCTGATTCTGTACTTTTTCACTGAAGTGAAAAAAAAAAAAAGACCTTTTTATAAAGGTTTCGAAGGGGGCAT 3305
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3306 AAAGAGCACTCCAGTGTGGCACCTTCATTTACAAATGAATACGCAGGCCCAGAGAGACTGAGTTAGTGGTGAAG 3379
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3380 CTAAGCCTGGAACCCAGGCCTCTGGTTTCTTCCCCAGGTGACTTTCATCACAGGGGTCTGTTCTTAGTGAGTGG 3453
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3454 TCTAGCATGCACCCAGCAGTCAGAGCCAGAAACCTGTTTGGCACGTTGGATTCCTTCCTCATCCCTCATACAAA 3527
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3528 AGTAGCCATCAAGTCCTTTAGATTCCTCTTCCTTCATGTTTCTTAGTCCTCTTCTTATACTGTTTGTATACTGA 3601
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3602 TGGAACCACCATCAGCCCTCCTTAAGTGATGAGCTGATCTGACCACACCATTCCCCTGCTCAGTCCCTTTCAGT 3675
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3676 GGATCACTGCTCATCCCAGGAAAAAGTCTGAACTCCTGTCTTGAAGGCTCTTCATGGCTCTGCTTCGTTTCCAG 3749
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3750 CCTCATACTCCCTGTCCCAAACTGTCTCTGTACTCCACTTGAACAGAATTACCTGTAGTCTTTTTCTGTCACCT 3823
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3824 CTAGGCCTTTGGACCTGCTGAGCCTGGGAATGTGCTCCTCAGACTGTCTCCTGTGGTTCTTTCCTTCCATTCTT 3897
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3898 CAGGACTGGGCCTTGTTCTAGGACATATCTGTGTCTCTTATGGGCTTGGAACATTTCCTCTATGTTCCCACAGC 3971
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3972 CTCCTATACTATATTCTTCACACATAGTATAGTATTTATTAATATGGCATTGCAGGTTCACAAATGCAAACCCC 4045
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4046 TTAAGAAAGGTAGGCAGGAAAAGTAAAGGAATAAAGTGGCCTAGAAGATAACAGCAATTGGAAGAATCAGAGAG 4119
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4120 CACATTCTCTGTTGGAGAAGGCGGTGCTATTCCATTCCACTCAGTTATTTTCATTTATAAGTGTGGACCTAGTG 4193
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4194 GTGTCAGTTCTTCCCATTCTTCCAAAACAGCCAGAAATCTTCATTTTCATGAAAGTTAAAAAACCTTGGTAACT 4267
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4268 ACAGTAAATATTAAAATTACTGAGACAAACAAAACATGTCTCCAGGCAGATTTGTGCCAATTTGCAACTTCTAC 4341
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4342 ATCCTCACTGTAATGTTTACACGCCTTATTTCTTCCAACTGATCTGTACCTGGACTGTAAGAATGTCTGTGCTG 4415
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4416 TATGCCCAGCACAACTCCTGGCACATAACCGGGCAAGGAAAGAATGATTCTATGTCTCCAGAGCAAAGGTAGCA 4489
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4490 GTACCATGGCATGCTGCAAAAAAAGATTCAGGTTTCTGAAAGGACTTTATATTTGCTTTGAGATGATTGAACTC 4563
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4564 AGCAAACACAATCATGGAGAAGAAAGGTACACACCTAGCTGTGGCCAGCTTCATGTCTTTTTTTTTTTTTTTGA 4637
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4638 GATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCACCTCACAGCAGGCTCTGCCGCCCT 4711
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4712 GGTTCCAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGACTAGCTGGGATTACAGGCACGTGCCACCACGCCTGG 4785
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4786 CTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTGCTGACCTCAGG 4859
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4860 TGATCTGCCCACCTCGGCCTCCCAAAGCGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCAACTTCTTGTC 4933
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4934 TTAACCACTCAGGCTAGAAGAAATGACCTGTGGGCAGCTTGAGGGCTGTTCTACCTACAAACTAACTCAGAGGC 5007
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5008 TTTAATGATTTAAGACAGAGGACTAAGTATAGTTATGTGGAGAAACAGCTTCCCTTCAAGCTCTACATATTTCC 5081
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5082 ATCGTTAACCATGTGCACCAGGTTCCAAAGTAGGGGCTATGTATTAGCAGGTTTTCTTAAAAGTTTAATAATGT 5155
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 5156 CACTGACAGATACTTCTGTCTCTAAGAAGTTTACACTAAGTTCTCTTTAATTGGAGACAACTCACTTAGGAAGA 5229
Query 1318 ------------------------------ 1317
Sbjct 5230 ATGATTACACCCACACTGAATTCAACACCC 5259
