Nucleotide Global Alignment

Description

Query:
TRCN0000469518
Subject:
XR_001740272.1
Aligned Length:
5077
Identities:
1076
Gaps:
4001

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCTCTAGTCAAGTGCCAAAAGAGCCCAATGTGTGTTCGGGTTTCAATTCTCCAGTCAGCGTCAGAGTTGGAGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCTCAATTTTAAAGAAGGCAAAGCCATGGTCATCGTTGCGGGTAAGGAACAACGCAGAAGCCTCTTCCACCCCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAATTTAATGCAACAGCAGGCGGAAGACCTGCAGGGTCCCGTTCAGAAAAAGGGCCGTCAGACTGTCGAGCCTA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGAATAAAAAGACCCTGTTTCTCTTAGATACCCGGTTAGCAAGGCAACATCGCTGGCCTCCTGCCCTGGACACT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TATCACCCCGGTGCTGCTGCGGCCGGGTTTAGCCGGCCCAGCGAGGAAGGAAGCCGAAAGAGCCAGGTTTTTGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGAGGGGGAGCGATGTCTGCGACGCACCGGAAGCGGCTCCGAGGAAGGCCTGTGGGAGTCTCGGAGACGTGTCT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GTCTGTGAGGCGCTGGGTGCACGTCCCCAGGGCTCTGGGCTAGGAAGGCAGCGGCGAGGTGCCTCCCCACGTAC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCCTCGCGGGCCCAGCCGAGCAACGTGGGGCGAAGGCGGCGGCGAAGGCCCGGGCTGGGAGCGTTGGCGGCCGG  592

Query    1  ----------ATGGCGGAGTCTGTGGAGCGCCTGCAGCAGCGGGTCCAGGAGCTGGAGCGGGAACTTGCCCAGG  64
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AGTCCCAGCCATGGCGGAGTCTGTGGAGCGCCTGCAGCAGCGGGTCCAGGAGCTGGAGCGGGAACTTGCCCAGG  666

Query   65  AGAGGAGTCTGCAGGTCCCGAGGAGCGGCGACGGAGGGGGCGGCCGGGTCCGCATCGAGAAGATGAGCTCAGAG  138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGAGGAGTCTGCAGGTCCCGAGGAGCGGCGACGGAGGGGGCGGCCGGGTCCGCATCGAGAAGATGAGCTCAGAG  740

Query  139  GTGGTGGATTCGAATCCCTACAGCCGCTTGATGGCATTGAAACGAATGGGAATTGTAAGCGACTATGAGAAAAT  212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GTGGTGGATTCGAATCCCTACAGCCGCTTGATGGCATTGAAACGAATGGGAATTGTAAGCGACTATGAGAAAAT  814

Query  213  CCGTACCTTTGCCGTAGCAATAGTAGGTGTTGGTGGAGTAGGTAGTGTGACTGCTGAAATGCTGACAAGATGTG  286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CCGTACCTTTGCCGTAGCAATAGTAGGTGTTGGTGGAGTAGGTAGTGTGACTGCTGAAATGCTGACAAGATGTG  888

Query  287  GCATTGGTAAGTTGCTACTCTTTGATTATGACAAGGTGGAACTAGCCAATATGAATAGACTTTTCTTCCAACCT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GCATTGGTAAGTTGCTACTCTTTGATTATGACAAGGTGGAACTAGCCAATATGAATAGACTTTTCTTCCAACCT  962

Query  361  CATCAAGCAGGATTAAGTAAAGTTCAAGCAGCAGAACATACTCTGAGGAACATTAATCCTGATGTTCTTTTTGA  434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CATCAAGCAGGATTAAGTAAAGTTCAAGCAGCAGAACATACTCTGAGGAACATTAATCCTGATGTTCTTTTTGA  1036

Query  435  AGTACACAACTATAATATAACCACAGTGGAAAACTTTCAACATTTCATGGATAGAATAAGTAATGGTGGGTTAG  508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AGTACACAACTATAATATAACCACAGTGGAAAACTTTCAACATTTCATGGATAGAATAAGTAATGGTGGGTTAG  1110

Query  509  AAGAAGGAAAACCTGTTGATCTAGTTCTTAGCTGTGTGGACAATTTTGAAGCTCGAATGACAATAAATACAGCT  582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  AAGAAGGAAAACCTGTTGATCTAGTTCTTAGCTGTGTGGACAATTTTGAAGCTCGAATGACAATAAATACAGCT  1184

Query  583  TGTAATGAACTTGGACAAACATGGATGGAATCTGGGGTCAGTGAAAATGCAGTTTCAGGGCATATACAGCTTAT  656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TGTAATGAACTTGGACAAACATGGATGGAATCTGGGGTCAGTGAAAATGCAGTTTCAGGGCATATACAGCTTAT  1258

Query  657  AATTCCTGGAGAATCTGCTTGTTTTGCGTGTGCTCCACCACTTGTAGTTGCTGCAAATATTGATGAAAAGACTC  730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AATTCCTGGAGAATCTGCTTGTTTTGCGTGTGCTCCACCACTTGTAGTTGCTGCAAATATTGATGAAAAGACTC  1332

Query  731  TGAAACGAGAAGGTGTTTGTGCAGCCAGTCTTCCTACCACTATGGGTGTGGTTGCTGGGATCTTAGTACAAAAC  804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TGAAACGAGAAGGTGTTTGTGCAGCCAGTCTTCCTACCACTATGGGTGTGGTTGCTGGGATCTTAGTACAAAAC  1406

Query  805  GTGTTAAAGTTTCTGTTAAATTTTGGTACTGTTAGTTTTTACCTTGGATACAATGCAATGCAGGATTTTTTTCC  878
            ||||||||                                                                  
Sbjct 1407  GTGTTAAA------------------------------------------------------------------  1414

Query  879  TACTATGTCCATGAAGCCAAATCCTCAGTGTGATGACAGAAATTGCAGGAAGCAGCAGGAGGAATATAAGAAAA  952
                                                                                  ||||
Sbjct 1415  ----------------------------------------------------------------------AAAA  1418

Query  953  AGGTAGCAGCACTGCCTAAACAAGAGGTTATACAAGAAGAGGAAGAGATAATCCATGAAGATAATGAATGGGGT  1026
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419  AGGTAGCAGCACTGCCTAAACAAGAGGTTATACAAGAAGAGGAAGAGATAATCCATGAAGATAATGAATGGGGT  1492

Query 1027  ATTGAGCTGGTATCTGAGGTTTCAGAAGAGGAACTGAAAAATTTTTCAGGTCCAGTTCCAGACTTACCTGAAGG  1100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493  ATTGAGCTGGTATCTGAGGTTTCAGAAGAGGAACTGAAAAATTTTTCAGGTCCAGTTCCAGACTTACCTGAAGG  1566

Query 1101  AATTACAGTGGCATACACAATTCCAAAAAAGCAAGAAGATTCTGTCACTGAGTTAACAGTGGAAGATTCTGGTG  1174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567  AATTACAGTGGCATACACAATTCCAAAAAAGCAAGAAGATTCTGTCACTGAGTTAACAGTGGAAGATTCTGGTG  1640

Query 1175  AAAGCTTGGAAGACCTCATGGCCAAAATGAAGAATATG------------------------------------  1212
            ||||||||||||||||||||||||||||||||||||||                                    
Sbjct 1641  AAAGCTTGGAAGACCTCATGGCCAAAATGAAGAATATGTAGATAATGGACTGGGATATATTGTATTTCTCATGT  1714

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 1715  TAAAGCCTCTTCCCTTGAAATTAAAAAAAAATTTTAACTGATAAAACTTAGGGCAACATTAATTAATGTATATT  1788

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 1789  CTTACCTGAATTGTTATACTTTTTGAAAATCCTGTGACTTGCCTGTTTCTCCCCGCTCCAACGAAATCATTAAC  1862

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 1863  TCTCCTAAAATGTGTTTCATTCTAGTAAGAAAACCTCAAAGGATATTGTAGGATATAAATCTTACTTGAAAACA  1936

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 1937  TAGCTGTTGAAATGTTTTGGCCTTTTGGAGTGGGGGAAGGACAAATCTGATCCTGTAATCTTTTTCTTTCCAGT  2010

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2011  AATCCCTTGTGTCTGTTGCATGAGGACATGGACAATAAAGTAGTATATGATCCTCAGATACAGGGAGAAGGACA  2084

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2085  AGGCATACAGCTTATTGATTAGAGCTGGCAAGCATCTGCTCATTATGTTTGGAATTGCTTTCTATAAGAAAATT  2158

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2159  GCCCACTACTACTAACTTGATCAACAATGAATTCAAAATAGTTAACCTATGAAATAACATCCTCTCAAATGTTT  2232

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2233  GCTGATGAAGTACAAGTTGAAATGTAGTTATTGGAAAAGTCTGTAACCTGTGGATCATATATATTCAAAGTGAG  2306

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2307  ACAAAGGCAAATAAAAAGCAGCTATTTTCATGAATAGACAAAGTTGATTTCAGGAAGTATAAATTATATTCTGC  2380

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2381  ACCGAACAAGGAACAGAAATTATTGCATCTGTGGAACATATATCTGGAGTTACTATACTTTACTGAAGAGCAAG  2454

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2455  GCATAAATTTAGACTAAAATCCATCCAGATTACACTCATTCTTTAGGCTACTCCTGGATACTTCATTTAAATTT  2528

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2529  GATTTTCGAGGTAGTGAGATGTCGGCAAGGTTTGTCCTGTATATTAGGAATAAAGGAAAAGTTCTAAACTGCCT  2602

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2603  CTGCAATGACTTGTAGTCAGTGGAAGAGTATCACTTTCCCCTGATCATGACCACTAAACTGTAAATTGATATAA  2676

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2677  ATTAGTTTTCTCTCGAGTTACACCCAAGTAATGAAGACTTAAGAGAACCTTGGTTGAAATAAATTTCCAATAGT  2750

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2751  TTGGAGACTCATAAATACCATGCAGGTGTAACCACTGCCAATAGGCTGTTTCTATGCTTATTTCCTATTTTGAT  2824

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2825  TTTTACTTTGAAGATAGGAATATCTAAATTATATCTCTAGGGAGAAAATGTTGTAAAAAATTAAAAGTACATCC  2898

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2899  CTGATTGTAAAATAAAGTTCAAAAAACTGATTTCAGAAAGTCTCAACTACCAAATGTTTTCAATATATTAGTTT  2972

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 2973  TGAGATGCTAGGATTATACTGTGATTCTTATGTTTATAGTAAAGTCTGGAAAGCAGAAGGATAGTTTTTTTAGC  3046

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 3047  CTGGAAACTTATTTATGTTGCCTTGGTGAGTCTTCTATCATTTTTTAAAAATTTAGCTTATTGAACTGTAAAAT  3120

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 3121  AGCTTTTCTAGTATGAGAGATGTTTTGAATTTAAAAAATGAAATGCAGTTTTTCAAAAATAAATTTCCTTTGGA  3194

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 3195  AATTCTTGCATATCAATTTAGTAAGGTTTTATAAAATTTTACAATTTGATAAAGTATCACATCTAGAATTCACT  3268

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 3269  GTCTTCTTTTATCTGCTCTCAAGTTGGCATTGCATCACTGCCTGTGTCTTACACTGCACCAAATGTTACCTAAT  3342

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 3343  TGACCTAACTTTTTTTGTCTAATATCTTTCATTAAAAACAATTGGATTATTTAACCAGAAAAAAAATCTGGTAA  3416

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 3417  TAGAGATGTTGCTATCCTAGAATACTCTCTTGACAGTCTGTATGCCATGAAAACTTGCATAAGAAGGCAGCTGA  3490

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 3491  TTACGAAAAATTAATCATCATTGAATTTAGTATTACTAAACTCATAGCATTTGTCCAGATTTGTAAACACTATT  3564

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 3565  GATTCTAATGTGAAAGATGGAAAAGCAGTCCCAGAATTGGCTTAGCACAGAGACTCTAAATGATAGTAAAACAA  3638

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 3639  CATATTCAACTTTAATTCCTGTCTTATTGTTAATGGGAAGTTAGTTATGGTTCTACTTAAATGTTGTAGAGAAA  3712

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 3713  ATAAGTATTACTAGTTTCTTCTCATAAAAATACTCCCTGGATACGTACACTGAACAACACAAAAAACGTAATGG  3786

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 3787  CCACTTAAGAATATTTATTTATTTATTTATTTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCA  3860

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 3861  GTGGCACGATCTCAGCTCACCACATCCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTA  3934

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 3935  GCTGGGATTACAGGTGCCCGCCACCACGCATGGCTAATTTTTGTATTTTTAGTAGAGGCGAGGTTTCACCATGT  4008

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 4009  TGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCATCTTGGCCTCCCAAAGTGCTGGGATTATAG  4082

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 4083  GTGTGAGCCACCACGCCCAGCCAAGAATATTTACTAAAGGAAGCTTTGACCCCTGCATCACATTTTTTTCATAT  4156

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 4157  TTCCCTTTCTGTAATCTCAGCACTTTGGGAGGCTGAGGTGGGTAGGTCAAGAGGTCAGGAGTTCGAGACCAGCC  4230

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 4231  TGACCAACATGGCAAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGTGCGTGACTGTAAT  4304

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 4305  CCCAGCTACTTAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATAG  4378

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 4379  TGCCACTGCACTCCAGTCTGGAAAACAGAGTGAGACTCTGTCTCAAAAAAAAAGGTATTGATGAATAAAAATTA  4452

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 4453  TAACTAGAATAAGTACTCTAACAATTCAGATTTATAATTGAGTTGTCTGAAAGCTACCTTTTTCATTGTGAAAG  4526

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 4527  TGCATATTAATGTGAAGAAAATATTCCTATTTGAGAACTTCAAATATGCATACACAAAGATGTTCCAGCTATTT  4600

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 4601  TTATCTTCTTAAGTATGCATTCTACATGAGAACGTTTGGGTTGGTAGTAAAATAAATAGTAATATCAAAATAGT  4674

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 4675  TTATTATGTTTAAATTTCATTCTTTTGGAATACATAATTTTGAGTGATCATGTCTCCAACTACAGTTATTCAGG  4748

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 4749  CACAAATTTTGGAGGTACAAAGAATAAATAATATTCTTAAGGTAGTTTTTCCTTTTATCAGGGTTCTTCTAGAG  4822

Query 1213  --------------------------------------------------------------------------  1212
                                                                                      
Sbjct 4823  TACTGGTCTCATTATTTTCTAAAGCAGTTTTTCTAAGGTGATAAACCGAACACATTACTTGCTATGTATTAAAT  4896

Query 1213  ---------------------------------------------  1212
                                                         
Sbjct 4897  GACTTGTACCACTAAATAATCAAATTCTAAGCTCTAACAGCTTAA  4941

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