Nucleotide Global Alignment

Description

Query:
TRCN0000469746
Subject:
XR_001741631.1
Aligned Length:
4015
Identities:
239
Gaps:
3745

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCGGGGCCTCGGACCCCGCCCTCCGCCTTCCCCGGGATTCCGTGCTGTGCGGGCCGGGCGCTGGCGTTGGATTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGTTCTGTGAGTTGACTGGGCATTCTGCATCACAAGGTGTGGCTGGGCACTGGAACAGCCGAAGTCACCTGGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCTGACTGGGTTGGACTGTCCAGGATGGTTCACTCCTACGACAGTGGATGCTCAACTGGGGCTGTCAACTGGAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCCCCATAGGTAACATCTCCCAGCATGGCAGCTCTGTTCCAAGAGGGAGTGCCGCATGAGAATCAGGAAGCAGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGCAAGGTTCCTCATGGTTTTGCCTTACAAGACACCCAGAGTTGTTTCAGCCTCATTCTGTTTGTCAACAGGTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACTGTTTCAAGGAGGAGGGGAACTAGACTCCAGCTCTTGATGAAAGCAGTGATAAGGAATTTGCAGTTCTAGTT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GATCTACTGCAGCTTTCATGGTGTTTTTTCCATATACTGATTATATAATAGTATTTGTCACCTTTTGCCAAGCG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCACGTATTACAATTAAGTGTCTCTTTATCTCACAGGCTAGATTTTCAACTTCTGGTGAGAGATTGCATTTTTT  592

Query    1  --------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCA  54
                                |..||||.|||||.|||||||||||||.|||||||     ||||||||..||||
Sbjct  593  TTTTTTTTTTTTTTTTTGAGACAGAGTTTTGCTGTGTCACCCAGGCTAGAGTGCA-----GCGATCTCGGCTCA  661

Query   55  CTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCC  128
            ||||||||||.|| |.||.|||||||||||||||.|||.||||||||||.|.|||.|||||||||||||||||.
Sbjct  662  CTGCAACCTCCGC-TCCCGGGTTCAAGCGATTCTTCTGCCTCAGCCTCCCGGGTAACTGGGATTACAGGTGCCT  734

Query  129  ACCACCACAG-CTGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCTCGA  201
            .||||    | |.||||||||||.|||||||||||||||||.||||||.|||||.||||||||.||||||||||
Sbjct  735  GCCAC----GCCCGGCTAATTTTCGTATTTTTAGTAGAGACAGGGTTTCACCATCTTGGCCAGGCTGGTCTCGA  804

Query  202  ACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCT  275
            |||||||||||||  ||.|||.||..|||||||.|||||||||||||||||||.|||.|||||||||||||||.
Sbjct  805  ACTCCTGACCTCA--TGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCC  876

Query  276  GGCC-----ATT--------------------------------------------------------------  282
            ||||     |||                                                              
Sbjct  877  GGCCGAGAGATTGCATTTTATTTAACCCAATTCTTTCAGTGACATAGCTATAATAACAATAAAGATGTATTAAG  950

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct  951  TTCCTCTACCATGTGTTTGATCCCATCTAATTGAACACATGATCTTATCTCATCCCTACCCTGATAGAATAGAC  1024

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1025  GTCTCATTTTCCAGATTGGGAACTGAGGCACAGAAAGATTCAGCTTTGCCCAAAAACCACATAATGGACAAGTG  1098

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1099  GCAGAGCCAGGATTTGAACCACTTAAGAGCCTGTGTTTTTATTCTCTCTCTTCTAGTGCCATCTCACAGTCTTG  1172

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1173  GCACCATCTTAGTAGCTTCAGGCTGCTATAAAAAGTTACCATAGGCTGGATGGCTTAAGCAACAGACATTTATT  1246

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1247  TCTCATGCTTATGGAGGCTGGGAAGTTCAGGATCCAGGTGGAGGCTGACCCCATGTCTTTCTGGGAGGTCCAGC  1320

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1321  TGCTCCTGGACCAGATAGTGCCAACACAATACTTCTCATTGTGTTATGATTGCCTACAGCAGGTGAAGGCCTGC  1394

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1395  TTCCTGTTTTCCAGATGGCCGTCTTCTCATTGTATCTTAACATGGTGGAAGGAGAATGAGAAAGCTCGCTTGTG  1468

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1469  TCTCTTTTTATAAGGGCACTAATCCAGACGCGGAGGGCTCACCTTTACAACAGCTAAACCTGATCACCCCCCAG  1542

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1543  AGGCCCCATCTCCAAATACCATCACATTGGGGATTGTGCTTTGACATATGAATGTGGGAGGACACGAGCATTCA  1616

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1617  GTCCATAACAGGCACCAAGGCACCAAGTCAGTCTGCACAAGTGTGTCGCTGGGCAGAAGAACAAAAGAGAAGGA  1690

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1691  AGAAGAAAGAACACAGTACAGAAAGTGAGTGGCGGTACCACAAAGAGTCATCAGCAAGTGCTGATGGTGGCTCC  1764

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1765  GGCCAGCACATTCCAAGCATCCTTGGGTAGCCTGATAAATGGAGTGCAGAATGTTCGGTAGCTCTGCAAGGAGT  1838

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1839  GGGAGTATTTATTGGGTCTGAGTGCTTGATGCGAAACTTTCCTCCAAAGTTCCAATTTTCTATCCGCCAAGATA  1912

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1913  AGTGATGGAGGTTTATGGTTCATGTTGTAGCACATCCACCCAGGCCAAGGACCTACAACTCTGAATTTCTGGCC  1986

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 1987  TGCCTCCTTCCAGCTAGAAGTGAATCTAGATTTACATGCCATCAGGAACAAGCATCGTCTTCCTGTTCTGTGAG  2060

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2061  TTCCTAGTTGTAGTAGGTACTGCTTTCATCCTGAGAATATCAATCTACATGCACAAGGTCCCTCTCTGTGGAGG  2134

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2135  AGTAGGTACTTAAACCCAAGATAAGTGGAAACTTTATATCCAAGGAGACAGAAAATAAAATTTCAGTATGTTTT  2208

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2209  ATATTAAACAACTTATTATACTTCTATCCTTTTATGAACATAAGGTCATCAGTAGGCCAAAAGTCTGAAAACAG  2282

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2283  TCTCAGTTCCTCAATGTGAATGCAAACCATTAGTGCAAAAAAAAAAAAAAAATAGATAAAATTAAAAAATGAAA  2356

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2357  GCACAGATACTTTCTAGCCTTGCTGTCTTATAGCCCCATATTCATAGGACTGACCATTCCCCATCTATACCCAC  2430

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2431  ACCTTTCCCAAAGGACACTATCTGTGAATGGTGGCCACGCGTTTGGATGTTACAGAGCAAGCACGTTCTTCATT  2504

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2505  ACTTCACAGACACAATTATGCAGCCCACGTGCATAGTGGAAGTCAGGAAAGCGTCTCCTGGTTGCCTGGTCAGC  2578

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2579  TGACATTCTCGATTCTTTATAGTCAATTGAGCCAGTCCTTAGCTCCTAGAAGAGTAAAACGATACATCCATTTA  2652

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2653  TTAAAAGTACTACTTTAAGACATTAGAAAGTCTGAAATGTTGGAACTCTGCCAAGCAATAGAGAAATCCTGTGA  2726

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2727  TGGTTAATTTTAGGTGTCAACTTGACTGGATCAGGGGATACACAGATAGCTGGTAAAGCATTATTTCTGGGTGT  2800

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2801  GTCTGTGAGCGTGTTTCTGGAGGAGATTGGCATTTGAAGCAGTGGACTGAGTGAGGAAGATCTGCCCTCACACA  2874

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2875  GTGTGGGTGGCACCATCTAATTGGCTGATGGCCCAGATAGAACAAAAAGGCAGAGGAGAGACAATTTTTTTCTC  2948

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 2949  TCTCTTCTGGAGCTGGGGCACCCTTCTTCTCCTGCTTTTGGAAGCAGAATTCCCAAGTTCTTCAGCTTTTGGAC  3022

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3023  TCCAGGATCTGAACCGTTGCTTCCCTGGGTTCTCAGACCTGCTGTCTTGGACTGAGAGTAACACCATCGGCTTC  3096

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3097  CCTAATTCTGAGGCCTTCAGCTGGGACTGAGCCACACTACCAGCTGCCCTGGGTCTCCAGCTTGCAAATGCCTG  3170

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3171  GCATGGGACTTCTCAGTTTCCAAATTGTGTGAGCTGATTCCCCTAATCAATCCCCTCTCATCTCTGTCTATCCA  3244

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3245  TCCATCCATCTATGTTTTGTCTCTCTGGAAAACCCTGTCTAATATAAATCCATTCTGAAAATACCAGGTACAGT  3318

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3319  CATGTACTACGTAATAATGTTTCGGTCAACAACGAACCACATATATGATGATGGTCCCGTAAGATTACCCTATT  3392

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3393  TTTACTATACCTTTTTATTTAATATTTAGATATGTTTAGGTACACAAATACTTCCCATTGTGTTATGATTGCCT  3466

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3467  AAAGTTTTCAGTTCAATCACGTGCTATACAGGTTTGGAGCCTAGGAGCAATAGGCCACACCATATAGCATAGGT  3540

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3541  GTGTAGTAGGCTATACCATGTAGGTTGGGTAAGTACACTTTGATGCTCAGAAAATGGTGAAATCACCTAAGGAT  3614

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3615  GCATTTCTCAGAATGTATCCTTGTTAAGTGACACATGAGTGTGCTTATGTGTGTAAGGTCAATAAAAAATGTCA  3688

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3689  CAGGGGCTTTATCAAAGGCAGCATTATTTTATATGGACTATGGGTCCTATTGAATATTTTTGTCCTCTTCCTTG  3762

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3763  CCCACCACCCACCCCCATAAACATTACCCACATTGCAGCCAGGGCAAACATTTAGAAATTGAAATCTGATTTAT  3836

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3837  GATCCCTTGTTAAGACATCCCAATAAAAGGCTTTTCAGGCTGGGATTGGTGGCTCATGCCTGTAATCCCAGCAC  3910

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3911  TTTGGGAGAATGAAGCAGGTGAATTGCTTGAGCCCAGAAGTTTGAGACCAGCCTGAGCAACAAATTGAGACCCC  3984

Query  283  -------------------  282
                               
Sbjct 3985  CATCGCTACCAAAAAAAAA  4003

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.