Nucleotide Global Alignment

Description

Query:
TRCN0000469746
Subject:
XR_002957763.1
Aligned Length:
4969
Identities:
243
Gaps:
4691

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGTCTGTGGCAGCATCTGTGTGTGTATGTGAGACTGAAAGGAGGTGGGAGATGAGGAGGGGAAGGGAATCAGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCCAGCAGCAACAGGCTCTATTCTTCAGTTCTGCTAAAAGAAAGAGGAAGAGAGGAAGAAAAAAATAGACACTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTTTTTTTTCTCACGACACACCCTGAAGGAGAAGGCGCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAGACCTGTCTCCCCAACACAAGCTAGAAGACAACAAAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGAT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGCTGCCAGGCCGAGCTCAAGGGAGCAGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCACCACTCCAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TAATTTATTATCACGGTTGGAGACTTTGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTAAATGCCCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TAAAGCTGATTTTTAAAATCTGGATATTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAGGCTTCTTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TTTCATAGATCATTTGTGTGAATGTTGATTTGTTATGTCATTGACATCATACACACATGCTTACATTTTGAAGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTGCTAGCGTTTCCCATTAATGCTTCTGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGTTCCTTGGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ATTAGTTGGTGCATGACCCTGACCCTTTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCTGCAAAATG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCTTATTCAGGAAAGCATAATGGATTAAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAGATACAAAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATAAATGAGATTTGGTCTCTGCCCTCGAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAAGTTCTATA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CAAACACAGATTAATATGCTATTCATGTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCAAAAAGATA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAACACAGAATACTTGTACTTCAGGTCCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATTGCTGAAAG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCATGAAATATATGAATGCCTTTCTAAAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGATTTATTTT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CAGAACAATCCAAGTTATTAGAAAGGTAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAGAATTGCCT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TTACTATGCTTTGACATTATGCTCTCAGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCTTACACAAC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTGCTCTATATCTACTACAGAGCTGTTACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTATATAAAGAT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GCCCAAGAAATTTAGATTTCATAGATATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAATTGAACTT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TCATACCTCACTTAAATCAACCCAGGGTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCATGTAACTA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ATTAAAGTTAGCATTTATTTTAGCTACTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATAACTACATA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AGACCTTAAGCCTTTTATATCTTTTCTTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCTTAGGTAAT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GATAATATTATTTTCTTTTAATTATTTGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAATCAGAAGTG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GAGTAAATAAATAAATAAAGTAAATTTCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTTTTATAAAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTATTCTAAATAGGATACTAAAATACAGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCTAAACTATA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ATGAGGAAATATTAAAATGTCAAGATGACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCTTAATTTCA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AACCACTTTGTTACCCTATTGCTATTTTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTTTTGTTATC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TCAGAGATTGGAAGTGTTAATTGTCCACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAGCATGATAG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CCCAACTGTAATGAATATATTCTAGAATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTCTAACAACT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GAGCTCAGGATTCTTTTCAGAGGAAAATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTGACTTCTTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CTCTCAACTTTTGCAAAGTGAGATCACCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTCAATTTTTC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AGGAAAATCTACGTCTTGTTTGGCTGAGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTAGCTGTGCT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TTTTAATTTGAATATTGCTATTGATTCAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAAAACATGTA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TTAAAGACAAACATAAATTAGTTTTGGTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGCTTTAGATG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  ATGTTTGGTAATTAGCTATATTCAAAAGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGTATATGAGT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GTTATTTTTATCTACCCATGTCTTTTTTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAGGAATAAGA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ATGATTTTGAAATTTCACTAAGAAAGATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTTGCTCACAG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CTCAGGTATTCATGGATCTCTGGAAGTTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTAAAAAATTC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TGCTGTAAATGCATGGTACATGATCTCATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACTCCTACTTT  2886

Query    1  ----------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACT  52
                                  |||||||||..||||||.|||||||||||||||||.||||.|||||||..||
Sbjct 2887  TTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGATCTCTGCT  2960

Query   53  CACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGC  126
            |||||||||||||||.|.|..|||||||||||||||||||.||||||||.|||||||.|||||||||||  .||
Sbjct 2961  CACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATTACA--AGC  3032

Query  127  CCA--CCACCACAGCTGGCTAA-----------TTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGC  187
            .||  |||.||...||||||||           |||||||||||||||||.|..|.||||||.|.|||.||||.
Sbjct 3033  ACATGCCATCAGGCCTGGCTAATTTTTATTTTTTTTTTGTATTTTTAGTACAATCAGGGTTTCAGCATGTTGGT  3106

Query  188  CAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGT  261
            |||.|||||||||||||||||||||||  ||.|||||||||||||||||||||||.|||||||||||.|||.||
Sbjct 3107  CAGGCTGGTCTCGAACTCCTGACCTCA--TGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATTACAGGCGT  3178

Query  262  GAGCCACTGCGCCTGGCC-----------ATT------------------------------------------  282
            ||||||..||||||||||           |||                                          
Sbjct 3179  GAGCCAACGCGCCTGGCCAACTCCTACATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCCCCTTGGAG  3252

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3253  ATCTTCCTTTAGGTCATTTTTACCATCTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAATAGGATTA  3326

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3327  GAGAGTACAGTAATAGGATAATTAGATTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTGAAGAAATG  3400

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3401  ATCTAAGTATGTGGACTCCTAAGTGAATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAATGCTGGTCT  3474

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3475  GGTTGATGAGTCCCATTGAAAATGAGATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATGTACTAAAT  3548

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3549  GTTTCAGTTCAGAGTGTTCTATTTAAATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATAAGCCTTCA  3622

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3623  GTTGTTTCATTTAAAGTGTACTTTAAGCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAGAGGGTACC  3696

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3697  TTGGGCACAATCTCCACGAATGTATGAGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGTTATTTTGC  3770

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3771  TCTGCTAAAGATAGAGAAACAAGAGCAGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAGTTAAAAAA  3844

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3845  TAATTGGCAAATAGGAATGTCAATGAAATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAATACGTTAAT  3918

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3919  GTTTTGACTACCAAGTAAAAGCAGTTGCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTGTGGAGGAA  3992

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3993  AGTAGTCCTATATATAACACCCATTCACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGATCTGTCTTG  4066

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4067  AAAATGCTTATTGCACAATTCTTCCTGATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTTTGGTTTAT  4140

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4141  TTATTCCATCATTCTTTCCTAACTCAAACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTCGTAACTTT  4214

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4215  TATTTTTAATTGTGCTAGCATTTTCTTAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATGTTATGTAA  4288

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4289  GTTTTACACTTTTTTCTCCAACATAATTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAATAGACTTAA  4362

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4363  TTTTCTTAGAGCAGTTTCAGGATTACAGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCCATCCCTTT  4436

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4437  TCTCACAGTTTCACTTGTTATTAACATCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAACAATTTTG  4510

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4511  TTACATTATTATTAAGTACACAGTTTACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGTTTTGAATA  4584

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4585  GTGTATAATGTCATATATTCACCATTATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCCCTATTTAT  4658

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4659  CCCTTCCTCTTCCCCTCACAAACCCCTGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTTTTCCAGAA  4732

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4733  TGTATGTATAGAGTCATACAGACTCTGTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGCATGTAAGC  4806

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4807  ATCCTTCATGACTTTTCATGGCTTGATAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGTATGGATAT  4880

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4881  GCCACAGTTTATTTATCTATATATCTGTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTATGAATAAA  4954

Query  283  -----------  282
                       
Sbjct 4955  GATACTATAAA  4965

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