Nucleotide Global Alignment

Description

• Query: TRCN0000470042
• Subject: XM_006507334.1
• Aligned Length: 1885
• Identities: 1287
• Gaps: 299

Alignment

Query    1  ATGTTTGGGATTCAGGAAAGCATCCAACG-GAGTGGAAGCAGCATGAAGGAAGAGCCGCTGGGCAGCGGCATGA  73
            |||||||||||||||||.|..||.|..|| |.|.|||.| |.|||||||||.||||||||||||||||||||||
Sbjct    1  ATGTTTGGGATTCAGGAGAATATTCCGCGCGGGGGGACG-ACCATGAAGGAGGAGCCGCTGGGCAGCGGCATGA  73

Query   74  ACGCGGTGCGGACGTGGATGCAGGGCGCCGGGGTGCTGGACGCCAACACGGCGGCGCAGAGCGGGGTGGGTCTG  147
            ||.|||||||..||||||||||....||.||.|||.||||||||||||||||.||.||||||||.|||||.|||
Sbjct   74  ACCCGGTGCGCTCGTGGATGCACACGGCAGGCGTGGTGGACGCCAACACGGCCGCCCAGAGCGGCGTGGGGCTG  147

Query  148  GCCCGGGCTCACTTTGAGAAGCAGCCGCCTTCCAATCTGCGGAAATCCAACTTCTTCCACTTCGTCCTGGCCCT  221
            ||.|||||.|||||.|||||||||||.||||||||.||.|||||||||||.||||||||||||||.|||||.||
Sbjct  148  GCGCGGGCGCACTTCGAGAAGCAGCCTCCTTCCAACCTCCGGAAATCCAATTTCTTCCACTTCGTGCTGGCGCT  221

Query  222  CTACGACAGACAGGGCCAGCCCGTGGAGATCGAGAGGACAGCGTTTGTGGGGTTCGTGGAGAAGGAAAAAGAAG  295
            |||||||||.|||||.|||||.|||||||||||.|||||.||.|||||||..||.||||||||.||.|||| ||
Sbjct  222  CTACGACAGGCAGGGGCAGCCGGTGGAGATCGAAAGGACCGCTTTTGTGGACTTTGTGGAGAAAGAGAAAG-AG  294

Query  296  CC-AACAGCGAAAAGACCAATAACGGAATTCACTACCGGCTTCAGCTTCTCTACAGCAATGGGATAAGGACGGA  368
            || ||||.|||.||.|||||.|||||.|||||||||..|||.|||||.||.|||||||||||..|.||.||.||
Sbjct  295  CCGAACAACGAGAAAACCAACAACGGCATTCACTACAAGCTGCAGCTACTGTACAGCAATGGCGTCAGAACAGA  368

Query  369  GCAGGATTTCTACGTGCGCCTCATTGACTCCATGACAAAACAAGCCATAGTGTATGAAGGCCAAGACAAGAACC  442
            |||.|||.|.||.||.||||||||.||.||.|||||.|||||.|||||.||||||||||||||.||||||||.|
Sbjct  369  GCAAGATCTGTATGTCCGCCTCATAGATTCAATGACCAAACAGGCCATCGTGTATGAAGGCCAGGACAAGAATC  442

Query  443  CAGAAATGTGCCGAGTCTTGCTCACACATGAGATCATGTGCAGCCGCTGTTGTGACAAGAAAAGCTGTGGCAAC  516
            |.||.||||||||.||..||||.||.||.|||||||||||||||||.||.|||||||||||.||.||||||||.
Sbjct  443  CGGAGATGTGCCGCGTGCTGCTGACCCACGAGATCATGTGCAGCCGGTGCTGTGACAAGAAGAGTTGTGGCAAT  516

Query  517  CGAAATGAGACTCCCTCAGATCCAGTGATAATTGACAGGTTCTTCTTGAAATTTTTCCTCAAATGTAACCAAAA  590
            .||||.|||||.||||||||.||.||.||.||||||||.|||||..|.||.||.||||||||.||.||.||.||
Sbjct  517  AGAAACGAGACACCCTCAGACCCTGTAATCATTGACAGATTCTTTCTAAAGTTCTTCCTCAAGTGCAATCAGAA  590

Query  591  TTGCCTAAAGAATGCGGGAAACCCACGTGACATGCGGAGATTCCAGGTCGTGGTGTCTACGACAGTCAATGTGG  664
            .|||||.|||||||||||.|||||.||.|||||||||||.|||||||||||.||.||.||.||||||||.||||
Sbjct  591  CTGCCTGAAGAATGCGGGCAACCCTCGGGACATGCGGAGGTTCCAGGTCGTTGTATCGACAACAGTCAACGTGG  664

Query  665  ATGGCCATGTCCTGGCAGTCTCTGATAACATGTTTGTCCATAATAATTCCAAGCATGGGCGGAGGGCTCGGAGG  738
            |.|||||.||.|||||.||.|||||.|||||||||||.||.||.||||||||.||.|||.||.||||.||..|.
Sbjct  665  ACGGCCACGTGCTGGCCGTGTCTGACAACATGTTTGTGCACAACAATTCCAAACACGGGAGGCGGGCCCGCCGC  738

Query  739  CTTGACCCCTCGGAAGGTACG---CCCTCTTATCTGGAACATGCTACTCCCTGTATCAAAGCCATCAGCCCGAG  809
            ||.|||||.||.|||||||||   ||.||||||||||||.||||.|||||.||||||||.||.||||||||.||
Sbjct  739  CTAGACCCGTCAGAAGGTACGGCCCCTTCTTATCTGGAAAATGCCACTCCGTGTATCAAGGCTATCAGCCCCAG  812

Query  810  TGAAGGATGGACGACGGGAGGTGCGACTGTGATCATCATAGGGGACAATTTCTTTGATGGGTTACAGGTCATAT  883
            ||||||.|||||.|||||.|||||.|||||||||||.||.||||||||.||||||||.||..||||.||..|.|
Sbjct  813  TGAAGGCTGGACCACGGGGGGTGCCACTGTGATCATAATCGGGGACAACTTCTTTGACGGTCTACAAGTTGTGT  886

Query  884  TCGGTACCATGCTGGTCTGGAGTGAGTTGATCACTCCTCATGCCATCCGTGTGCAGACCCCTCCTCGGCACATC  957
            ||||.||.|||.||||.|||||||||.||||.||.||.||.||||||||.||||||||.||.|||||.||||||
Sbjct  887  TCGGAACTATGTTGGTGTGGAGTGAGCTGATAACCCCCCACGCCATCCGAGTGCAGACGCCGCCTCGACACATC  960

Query  958  CCTGGTGTTGTGGAAGTCACACTGTCCTACAAATCTAAGCAGTTCTGCAAAGGAACACCAGGCAGATTCATTTA  1031
            |||||.|||||.|||||.||.||.||||||||.||||||||||||||||||||..|.||.||..|.||..|.||
Sbjct  961  CCTGGAGTTGTTGAAGTGACCCTCTCCTACAAGTCTAAGCAGTTCTGCAAAGGCGCTCCTGGACGCTTTGTCTA  1034

Query 1032  TACAGCGCTCAACGAACCCACCATCGATTATGGTTTCCAGAGGTTACAGAAGGTCATTCCTCGGCACCCTGGTG  1105
            .||.||.||.||.||.||.|||||.|||||.||.|||||||||||.|||||.||.||.||..|.||.||.||||
Sbjct 1035  CACTGCCCTTAATGAGCCAACCATAGATTACGGCTTCCAGAGGTTGCAGAAAGTGATACCCAGACATCCAGGTG  1108

Query 1106  ACCCTGAGCGTTTGCCAAAGGAAGTAATACTCAAAAGGGCTGCGGATCTGGTAGAAGCACTGTATGGGATGCCA  1179
            ||||.||..|.||.||.||||||||..||||.||.|||||.||.||.||.||.|||||..|||||||||||||.
Sbjct 1109  ACCCCGAAAGGTTACCCAAGGAAGTGTTACTGAAGAGGGCAGCAGACCTTGTGGAAGCCTTGTATGGGATGCCT  1182

Query 1180  CACAACAACCAGGAAATCATTCTGAAGAGAGCGGCCGACATTGCCGAGGCCCTGTACAGTGTTCCCCGCAACCA  1253
            |||||.||||||||.|||||.|||||||||||||||||||||||.|||||..|||||||.|||||||||||.||
Sbjct 1183  CACAATAACCAGGAGATCATCCTGAAGAGAGCGGCCGACATTGCTGAGGCGTTGTACAGCGTTCCCCGCAATCA  1256

Query 1254  CAACCAACTCCCGGCCCTTGCTAACACCTCGGTCCACGCAGGGATGATGGGCGTGAATTCGTTCAGTGGACAAC  1327
            ||||||..||||..||||.|..||||||.|.|..|||.|.||.||||||||.|||||.||.|||||..|.||.|
Sbjct 1257  CAACCAGATCCCCACCCTGGGCAACACCCCAGCACACACTGGCATGATGGGTGTGAACTCCTTCAGCAGCCAGC  1330

Query 1328  TGGCCGTGAATGTCTCCGAGGCATCACAAGCCACCAATCAGGGTTTCACCCGCAACTCAAGCAGCGTATCACCA  1401
            |.|||||.|||||.||.|||.|.||||||||                                           
Sbjct 1331  TAGCCGTTAATGTGTCAGAGACCTCACAAGC-------------------------------------------  1361

Query 1402  CACGGGTACGTGCCGAGCACCACTCCCCAGCAGACCAACTATAACTCCGTCACCACGAGCATGAACGGATACGG  1475
                                                                                      
Sbjct 1362  --------------------------------------------------------------------------  1361

Query 1476  CTCTGCCGCAATGTCCAATTTGGGCGGCTCCCCCACCTTCCTCAACGGCTCAGCTGCCAACTCCCCCTATGCCA  1549
                    |||||.||||                                                       .
Sbjct 1362  --------CAATGACCAA-------------------------------------------------------G  1372

Query 1550  TAGTGCCATCCAGCCCCACCATGGCCTCCTC------CACAAGCCTCCCCTCCAACTGCAGCAGCTC-CTCGGG  1616
            |||||||.|||||||||||||||||..||||      |||   ||||||.||.|||||.||||||.| |.| ||
Sbjct 1373  TAGTGCCGTCCAGCCCCACCATGGCAGCCTCTTCGGTCAC---CCTCCCTTCAAACTGTAGCAGCACACAC-GG  1442

Query 1617  CATCTTCTCCTTCTCACCAGCCAACATGGTCTCAGCCGTGAAACAGAAGAGTGCTTTCGCACCAGTCGTCAGAC  1690
            |||.|||||.||||||||.|||||..|..||||.||.||||||||||||||.|||||.||.||.||.|||.|.|
Sbjct 1443  CATTTTCTCATTCTCACCTGCCAATGTCATCTCCGCAGTGAAACAGAAGAGCGCTTTTGCGCCCGTGGTCCGGC  1516

Query 1691  CCCAGACCTCCCCACCTCCCACCTGCACCAGCACCAACGGGAACAGCCTGCAAGCGATATCTG-----------  1753
            ||||..||||.||.|||||..|||||||||||.|||||||||||.|.||||||| |.|.||||           
Sbjct 1517  CCCAAGCCTCGCCTCCTCCTTCCTGCACCAGCGCCAACGGGAACGGACTGCAAG-GCTCTCTGCTGGGTGCCGA  1589

Query 1754  ----GCA----TG----------ATTGTTCCTCCTATG------------------------------------  1773
                |||    ||          |.||..|||..|.||                                    
Sbjct 1590  GGACGCAACCGTGGAGAAGACAAACTGGCCCTTTTGTGAAGTCGGTGGTATATTCCACTTTGATGAACTAATGC  1663

Query 1774  -----------------------------------  1773
                                               
Sbjct 1664  TCAAAAAAGGAACTGGAAAGCTATGTCTGGGCTGG  1698