Nucleotide Global Alignment

Description

• Query: TRCN0000470042
• Subject: XM_011241672.1
• Aligned Length: 1782
• Identities: 1265
• Gaps: 219

Alignment

Query    1  ATGTTTGGGATTCAGGAAAGCATCCAACG-GAGTGGAAGCAGCATGAAGGAAGAGCCGCTGGGCAGCGGCATGA  73
            |||||||||||||||||.|..||.|..|| |.|.|||.| |.|||||||||.||||||||||||||||||||||
Sbjct    1  ATGTTTGGGATTCAGGAGAATATTCCGCGCGGGGGGACG-ACCATGAAGGAGGAGCCGCTGGGCAGCGGCATGA  73

Query   74  ACGCGGTGCGGACGTGGATGCAGGGCGCCGGGGTGCTGGACGCCAACACGGCGGCGCAGAGCGGGGTGGGTCTG  147
            ||.|||||||..||||||||||....||.||.|||.||||||||||||||||.||.||||||||.|||||.|||
Sbjct   74  ACCCGGTGCGCTCGTGGATGCACACGGCAGGCGTGGTGGACGCCAACACGGCCGCCCAGAGCGGCGTGGGGCTG  147

Query  148  GCCCGGGCTCACTTTGAGAAGCAGCCGCCTTCCAATCTGCGGAAATCCAACTTCTTCCACTTCGTCCTGGCCCT  221
            ||.|||||.|||||.|||||||||||.||||||||.||.|||||||||||.||||||||||||||.|||||.||
Sbjct  148  GCGCGGGCGCACTTCGAGAAGCAGCCTCCTTCCAACCTCCGGAAATCCAATTTCTTCCACTTCGTGCTGGCGCT  221

Query  222  CTACGACAGACAGGGCCAGCCCGTGGAGATCGAGAGGACAGCGTTTGTGGGGTTCGTGGAGAAGGAAAAAGAAG  295
            |||||||||.|||||.|||||.|||||||||||.|||||.||.|||||||..||.||||||||.||.|||| ||
Sbjct  222  CTACGACAGGCAGGGGCAGCCGGTGGAGATCGAAAGGACCGCTTTTGTGGACTTTGTGGAGAAAGAGAAAG-AG  294

Query  296  CC-AACAGCGAAAAGACCAATAACGGAATTCACTACCGGCTTCAGCTTCTCTACAGCAATGGGATAAGGACGGA  368
            || ||||.|||.||.|||||.|||||.|||||||||..|||.|||||.||.|||||||||||..|.||.||.||
Sbjct  295  CCGAACAACGAGAAAACCAACAACGGCATTCACTACAAGCTGCAGCTACTGTACAGCAATGGCGTCAGAACAGA  368

Query  369  GCAGGATTTCTACGTGCGCCTCATTGACTCCATGACAAAACAAGCCATAGTGTATGAAGGCCAAGACAAGAACC  442
            |||.|||.|.||.||.||||||||.||.||.|||||.|||||.|||||.||||||||||||||.||||||||.|
Sbjct  369  GCAAGATCTGTATGTCCGCCTCATAGATTCAATGACCAAACAGGCCATCGTGTATGAAGGCCAGGACAAGAATC  442

Query  443  CAGAAATGTGCCGAGTCTTGCTCACACATGAGATCATGTGCAGCCGCTGTTGTGACAAGAAAAGCTGTGGCAAC  516
            |.||.||||||||.||..||||.||.||.|||||||||||||||||.||.|||||||||||.||.||||||||.
Sbjct  443  CGGAGATGTGCCGCGTGCTGCTGACCCACGAGATCATGTGCAGCCGGTGCTGTGACAAGAAGAGTTGTGGCAAT  516

Query  517  CGAAATGAGACTCCCTCAGATCCAGTGATAATTGACAGGTTCTTCTTGAAATTTTTCCTCAAATGTAACCAAAA  590
            .||||.|||||.||||||||.||.||.||.||||||||.|||||..|.||.||.||||||||.||.||.||.||
Sbjct  517  AGAAACGAGACACCCTCAGACCCTGTAATCATTGACAGATTCTTTCTAAAGTTCTTCCTCAAGTGCAATCAGAA  590

Query  591  TTGCCTAAAGAATGCGGGAAACCCACGTGACATGCGGAGATTCCAGGTCGTGGTGTCTACGACAGTCAATGTGG  664
            .|||||.|||||||||||.|||||.||.|||||||||||.|||||||||||.||.||.||.||||||||.||||
Sbjct  591  CTGCCTGAAGAATGCGGGCAACCCTCGGGACATGCGGAGGTTCCAGGTCGTTGTATCGACAACAGTCAACGTGG  664

Query  665  ATGGCCATGTCCTGGCAGTCTCTGATAACATGTTTGTCCATAATAATTCCAAGCATGGGCGGAGGGCTCGGAGG  738
            |.|||||.||.|||||.||.|||||.|||||||||||.||.||.||||||||.||.|||.||.||||.||..|.
Sbjct  665  ACGGCCACGTGCTGGCCGTGTCTGACAACATGTTTGTGCACAACAATTCCAAACACGGGAGGCGGGCCCGCCGC  738

Query  739  CTTGACCCCTCGGAAGGTACGCCCTCTTATCTGGAACATGCTACTCCCTGTATCAAAGCCATCAGCCCGAGTGA  812
            ||.|||||.||.|||                        ||.|||||.||||||||.||.||||||||.|||||
Sbjct  739  CTAGACCCGTCAGAA------------------------GCCACTCCGTGTATCAAGGCTATCAGCCCCAGTGA  788

Query  813  AGGATGGACGACGGGAGGTGCGACTGTGATCATCATAGGGGACAATTTCTTTGATGGGTTACAGGTCATATTCG  886
            |||.|||||.|||||.|||||.|||||||||||.||.||||||||.||||||||.||..||||.||..|.||||
Sbjct  789  AGGCTGGACCACGGGGGGTGCCACTGTGATCATAATCGGGGACAACTTCTTTGACGGTCTACAAGTTGTGTTCG  862

Query  887  GTACCATGCTGGTCTGGAGTGAGTTGATCACTCCTCATGCCATCCGTGTGCAGACCCCTCCTCGGCACATCCCT  960
            |.||.|||.||||.|||||||||.||||.||.||.||.||||||||.||||||||.||.|||||.|||||||||
Sbjct  863  GAACTATGTTGGTGTGGAGTGAGCTGATAACCCCCCACGCCATCCGAGTGCAGACGCCGCCTCGACACATCCCT  936

Query  961  GGTGTTGTGGAAGTCACACTGTCCTACAAATCTAAGCAGTTCTGCAAAGGAACACCAGGCAGATTCATTTATAC  1034
            ||.|||||.|||||.||.||.||||||||.||||||||||||||||||||..|.||.||..|.||..|.||.||
Sbjct  937  GGAGTTGTTGAAGTGACCCTCTCCTACAAGTCTAAGCAGTTCTGCAAAGGCGCTCCTGGACGCTTTGTCTACAC  1010

Query 1035  AGCGCTCAACGAACCCACCATCGATTATGGTTTCCAGAGGTTACAGAAGGTCATTCCTCGGCACCCTGGTGACC  1108
            .||.||.||.||.||.|||||.|||||.||.|||||||||||.|||||.||.||.||..|.||.||.|||||||
Sbjct 1011  TGCCCTTAATGAGCCAACCATAGATTACGGCTTCCAGAGGTTGCAGAAAGTGATACCCAGACATCCAGGTGACC  1084

Query 1109  CTGAGCGTTTGCCAAAGGAAGTAATACTCAAAAGGGCTGCGGATCTGGTAGAAGCACTGTATGGGATGCCACAC  1182
            |.||..|.||.||.||||||||..||||.||.|||||.||.||.||.||.|||||..|||||||||||||.|||
Sbjct 1085  CCGAAAGGTTACCCAAGGAAGTGTTACTGAAGAGGGCAGCAGACCTTGTGGAAGCCTTGTATGGGATGCCTCAC  1158

Query 1183  AACAACCAGGAAATCATTCTGAAGAGAGCGGCCGACATTGCCGAGGCCCTGTACAGTGTTCCCCGCAACCACAA  1256
            ||.||||||||.|||||.|||||||||||||||||||||||.|||||..|||||||.|||||||||||.|||||
Sbjct 1159  AATAACCAGGAGATCATCCTGAAGAGAGCGGCCGACATTGCTGAGGCGTTGTACAGCGTTCCCCGCAATCACAA  1232

Query 1257  CCAACTCCCGGCCCTTGCTAACACCTCGGTCCACGCAGGGATGATGGGCGTGAATTCGTTCAGTGGACAACTGG  1330
            |||..||||..||||.|..||||||.|.|..|||.|.||.||||||||.|||||.||.|||||..|.||.||.|
Sbjct 1233  CCAGATCCCCACCCTGGGCAACACCCCAGCACACACTGGCATGATGGGTGTGAACTCCTTCAGCAGCCAGCTAG  1306

Query 1331  CCGTGAATGTCTCCGAGGCATCACAAGCCACCAATCAGGGTTTCACCCGCAACTCAAGCAGCGTATCACCACAC  1404
            ||||.|||||.||.|||.|.||||||||                                              
Sbjct 1307  CCGTTAATGTGTCAGAGACCTCACAAGC----------------------------------------------  1334

Query 1405  GGGTACGTGCCGAGCACCACTCCCCAGCAGACCAACTATAACTCCGTCACCACGAGCATGAACGGATACGGCTC  1478
                                                                                      
Sbjct 1335  --------------------------------------------------------------------------  1334

Query 1479  TGCCGCAATGTCCAATTTGGGCGGCTCCCCCACCTTCCTCAACGGCTCAGCTGCCAACTCCCCCTATGCCATAG  1552
                 |||||.||||                                                       .|||
Sbjct 1335  -----CAATGACCAA-------------------------------------------------------GTAG  1348

Query 1553  TGCCATCCAGCCCCACCATGGCCTCCTC------CACAAGCCTCCCCTCCAACTGCAGCAGCTC-CTCGGGCAT  1619
            ||||.|||||||||||||||||..||||      |||   ||||||.||.|||||.||||||.| |.| |||||
Sbjct 1349  TGCCGTCCAGCCCCACCATGGCAGCCTCTTCGGTCAC---CCTCCCTTCAAACTGTAGCAGCACACAC-GGCAT  1418

Query 1620  CTTCTCCTTCTCACCAGCCAACATGGTCTCAGCCGTGAAACAGAAGAGTGCTTTCGCACCAGTCGTCAGACCCC  1693
            .|||||.||||||||.|||||..|..||||.||.||||||||||||||.|||||.||.||.||.|||.|.||||
Sbjct 1419  TTTCTCATTCTCACCTGCCAATGTCATCTCCGCAGTGAAACAGAAGAGCGCTTTTGCGCCCGTGGTCCGGCCCC  1492

Query 1694  AGACCTCCCCACCTCCCACCTGCACCAGCACCAACGGGAACAGCCTGCAAGCGATATCTGGCATGATTGTTCCT  1767
            |..||||.||.|||||..|||||||||||.|||||||||||.|.||||||||.||.|||||..||.|.||.||.
Sbjct 1493  AAGCCTCGCCTCCTCCTTCCTGCACCAGCGCCAACGGGAACGGACTGCAAGCTATGTCTGGGCTGGTAGTCCCG  1566

Query 1768  CCTATG  1773
            ||.|||
Sbjct 1567  CCCATG  1572