Nucleotide Global Alignment

Description

Query:
TRCN0000470281
Subject:
XM_011246731.2
Aligned Length:
1919
Identities:
1573
Gaps:
124

Alignment

Query    1  ------ATGATTGCTAAAGACAAAGACACGCTTGACTTCATTCGG----AACTTGTGCCAGAAGAGACATGTTT  64
                  ||.|||     ||.|||                |||.||    |||.|        |||.|||  |||
Sbjct    1  ATGGGCATCATT-----AGCCAA----------------ATTTGGTGTAAACAT--------AGATACA--TTT  43

Query   65  GTATCCAGTCATCTCTGGCAAAAGTATCCTCAAAAAAGGTAAATGAGAAAGATGTTGATAAGTTTCTGCTCTAC  138
            ||||||||||||||||.||||||||||||||||||||.|||||||||||.||.|||||||||||||.|||.|||
Sbjct   44  GTATCCAGTCATCTCTTGCAAAAGTATCCTCAAAAAAAGTAAATGAGAAGGAAGTTGATAAGTTTCAGCTTTAC  117

Query  139  CAGCATTTTTCCTGCAACATAAGAAACATTCACCATCATCAGATTCTGGCAATTAACCGTGGAGAAAATTTGAA  212
            |||.||||.||||||||||||||.|.|||.||||||||.|||||||||||.||||||||.|||||.||||||||
Sbjct  118  CAGAATTTCTCCTGCAACATAAGGACCATCCACCATCACCAGATTCTGGCCATTAACCGAGGAGAGAATTTGAA  191

Query  213  GGTACTGACGGTTAAGGTCAATATTTCTGATGGAGTGAAGGATGAATTCTGTAGGTGGTGCATCCAAAACAGGT  286
            |.|.|||||.||.||.|||||.||||||||||||||.|||.|.|||||||||.|.|||||.||.||.|||||||
Sbjct  192  GATCCTGACCGTCAAAGTCAACATTTCTGATGGAGTAAAGAACGAATTCTGTCGATGGTGTATACAGAACAGGT  265

Query  287  GGAGACCACGTAGCTTTGCAAGGCCAGAGTTAATGAAGATCTTATATAATTCACTGAATGATTCCTTTAAACGC  360
            ||||.||||||.||||||||.||||||||||.||||||||||||.|||||||||||.||||.||||||||.|||
Sbjct  266  GGAGGCCACGTGGCTTTGCACGGCCAGAGTTGATGAAGATCTTACATAATTCACTGGATGACTCCTTTAAGCGC  339

Query  361  CTTATTTATCCTCTTCTCTGTAGAGAATTCAGAGCCAAACTAACATCAGATGCAGAGAAGGAATCAGTAATGAT  434
            ||.|||..||||||.|||||||||||.||||||||||||||.||||||||||||||||||.|||||||||||||
Sbjct  340  CTCATTGTTCCTCTCCTCTGTAGAGAGTTCAGAGCCAAACTGACATCAGATGCAGAGAAGCAATCAGTAATGAT  413

Query  435  GTTTGGACGGAACCTTCGTCAGCTCCTTTTAACAAGCCCTGTTCCAGGGCGCACCTTAATGGGAGTGGATCCTG  508
            ||||||||.||||||.||.|||||||||||||||||.|||||.|||||.||||||.|.||||||||.|||||||
Sbjct  414  GTTTGGACAGAACCTCCGCCAGCTCCTTTTAACAAGTCCTGTGCCAGGCCGCACCCTGATGGGAGTAGATCCTG  487

Query  509  GTTATAAACATGGTTGCAAATTAGCTATAATTTCTCCTACTAGTCAGATACTTCATACTGATGTGGTTTACTTG  582
            |.||.||||||||.||||||.||||.||.||||||||||||||||||||.|||||.||.|||||||||||||||
Sbjct  488  GCTACAAACATGGATGCAAACTAGCCATCATTTCTCCTACTAGTCAGATCCTTCACACGGATGTGGTTTACTTG  561

Query  583  CATTGTGGACAAGGCTTCCGAGAGGCGGAGAAAATAAAGACACTTTTGCTGAATTTCAACTGCAGCACAGTAGT  656
            ||.|||||||||||||||||||||||.|||||.||.||||..|||||||||.|||||||||||||.|||||.||
Sbjct  562  CACTGTGGACAAGGCTTCCGAGAGGCCGAGAAGATCAAGAGGCTTTTGCTGCATTTCAACTGCAGAACAGTGGT  635

Query  657  GATTGGAAATGGAACTGCCTGCAGGGAAACAGAAGCTTACTTTGCTGACCTGATAATGAAGAATTATTTTGCAC  730
            |||.||||||||||||||||||.|||||||.|||||.|||||||||||||||||||||||.|||||.|||||||
Sbjct  636  GATCGGAAATGGAACTGCCTGCCGGGAAACTGAAGCCTACTTTGCTGACCTGATAATGAAAAATTACTTTGCAC  709

Query  731  CACTGGATGTTGTTTACTGTATCGTCAGTGAAGCAGGAGCATCAATCTACAGTGTCAGCCCTGAAGCTAACAAA  804
            ||||||||||.||||||||.|||||||||||||||||.||.||.|||||||||||||||||.|||||.|||||.
Sbjct  710  CACTGGATGTCGTTTACTGCATCGTCAGTGAAGCAGGGGCCTCCATCTACAGTGTCAGCCCCGAAGCGAACAAG  783

Query  805  GAGATGCCAGGGCTGGACCCTAATTTGAGAAGTGCAGTTTCCATAGCAAGGCGTGTACAAGATCCATTAGCTGA  878
            |||||||||||.|||||||||||.||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct  784  GAGATGCCAGGACTGGACCCTAACTTGAGAAGTGCAGTTTCCATAGCAAGGCGTGTTCAAGATCCATTAGCTGA  857

Query  879  GCTAGTGAAAATTGAGCCAAAGCACATTGGAGTTGGAATGTATCAGCATGACGTATCCCAGACTTTACTCAAGG  952
            ||||||||||.||||.||.||||||||||||||||||||||||||||||||.|||||||||||.||||||||||
Sbjct  858  GCTAGTGAAATTTGACCCGAAGCACATTGGAGTTGGAATGTATCAGCATGATGTATCCCAGACATTACTCAAGG  931

Query  953  CAACACTGGACAGTGTTGTAGAAGAATGTGTCAGCTTTGTGGGAGTGGATATTAACATCTGTTCAGAAGTTTTG  1026
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||.||||||
Sbjct  932  CAACACTGGACAGTGTTGTAGAAGAATGTGTCAGCTTTGTGGGAGTGGATATTAACATTTGTTCTGAGGTTTTG  1005

Query 1027  TTAAGGCATATTGCAGGACTCAATGCCAACAGGGCCAAAAATATTATTGAATGGCGAGAGAAAAATGGACCCTT  1100
            |||||||||||||||||||||||||||||.||.|||||||||||||||||.||||||||||||||||| |||||
Sbjct 1006  TTAAGGCATATTGCAGGACTCAATGCCAATAGAGCCAAAAATATTATTGAGTGGCGAGAGAAAAATGG-CCCTT  1078

Query 1101  T-ATCAACCGAGAACAGCTGAAGAAAGTGAAAGGGCTGGGCCCAAAATCCTTCCAACAGTGTGCTGGCTTCATC  1173
            | ||.||||||||||||.|||||||.|||||||||||.||.||||||||||||||.|||||||||||||||.||
Sbjct 1079  TCATTAACCGAGAACAGTTGAAGAAGGTGAAAGGGCTTGGTCCAAAATCCTTCCAGCAGTGTGCTGGCTTCGTC  1152

Query 1174  AGAATCAACCAGGATTATATCCGAACGTTTTGCAGTCAGCAAACTGAAACTTCAGGCCAAATTCAAGGAGTTGC  1247
            ||.||||||||||||||.|||||.||.||.||||||||.||.|||||..||||||||||.|..||.|.|..|||
Sbjct 1153  AGGATCAACCAGGATTACATCCGGACATTCTGCAGTCAACACACTGACTCTTCAGGCCAGAGCCAGGAAACTGC  1226

Query 1248  TGTGACATCTTCAGCAGACGTTGAGGTCACAAATGAGAAGCAGGGCAAAAAGAAGAGCAAAACTGCAGTGAATG  1321
                 |||                |||||||||||||||||.||||||||||||||.||||   ||||   |||
Sbjct 1227  -----CAT----------------GGTCACAAATGAGAAGCTGGGCAAAAAGAAGAACAAA---GCAG---ATG  1273

Query 1322  TTTTACTGAAGCCAAATCCTTTGGACCAAACTTGTATTCATCCAGAATCATATGACATAGCAATGA--------  1387
            .....||.|..|||||.||..|||||||.|||||.||.|||||.|||||.||||||||||||.|.|        
Sbjct 1274  CCACCCTCATACCAAACCCACTGGACCAGACTTGCATCCATCCGGAATCCTATGACATAGCAGTCAGTAAAAGA  1347

Query 1388  ----------------------------------GGTTTTTGTCATCCATTGGAGGGACACTGTATGAGGTTGG  1427
                                              |||||||.||.|.||||||.||||||.|||.||||.||||
Sbjct 1348  GACACTAATTTCTGGAGCCTCTACATTCTATACTGGTTTTTATCGTTCATTGGGGGGACAATGTGTGAGATTGG  1421

Query 1428  AAAGCCTGAAATGCAACAAAAAATAAATTCAT-TC-CTTGAAAAGGAAGGAATGGAGAAAATTGCAGAAAGATT  1499
            |||||||||||||||.||.||||||||  |.| || ||.|..||.|||||.||.|||.|||.|||.|||||.||
Sbjct 1422  AAAGCCTGAAATGCAGCAGAAAATAAA--CGTGTCTCTCGGGAAAGAAGGCATAGAGGAAACTGCTGAAAGGTT  1493

Query 1500  GCAAACAACAGTACACACCTTACAGGTCATCATAGATGGTCTCAGCCAGCCTGAAAGCTTTGACTTTCGAACAG  1573
            .||.|||||.||.|||||..|.|||||||||||||||||.||.||||||||..|||.|||||||.|.|||||||
Sbjct 1494  ACAGACAACTGTGCACACACTGCAGGTCATCATAGATGGACTGAGCCAGCCCAAAACCTTTGACATCCGAACAG  1567

Query 1574  ATTTTGATAAACCTGATTTCAAGAGAAGCATAGTATGCCTGGAAGATCTGCAGATTGGGACAGTTCTTACAGGC  1647
            ||||||||||.|||||.|||||||||||||||||.||.||||||||.||||||.||||||||||||||||||||
Sbjct 1568  ATTTTGATAAGCCTGACTTCAAGAGAAGCATAGTGTGTCTGGAAGACCTGCAGGTTGGGACAGTTCTTACAGGC  1641

Query 1648  AAAGTTGAGAATGCCACTCTCTTTGGAATTTTTGTGGATATAGGAGTGGGGAAATCTGGGCTGATTCCCATACG  1721
            |||||.||||||||.|||||.|||||..|.|||||||||||||||||||||||..|.|||||||||||.||.||
Sbjct 1642  AAAGTGGAGAATGCTACTCTGTTTGGGGTCTTTGTGGATATAGGAGTGGGGAAGGCGGGGCTGATTCCTATCCG  1715

Query 1722  AAATG----TAACAGAAGCAAAACTTTCAAAAACAAAGAAGAGAAGAAGCCTTGGACTGGGCCCCGGAGAAAGA  1791
                |    ||||||||||.||.||.||.||||||||||.||||||||||||.||.||||||||||||||.|.|
Sbjct 1716  ----GTTCATAACAGAAGCCAAGCTGTCCAAAACAAAGAGGAGAAGAAGCCTGGGCCTGGGCCCCGGAGAGAAA  1785

Query 1792  GTGGAAGTCCAAGTACTCAACATTGACATCCCCCGATCTAGGATTACTCTGGACCTCATTCGGGTGTTA  1860
            |||||.||..||||.|||||..|.|||||.|||||||||.|||||.|.||.||||||.|.||||||||.
Sbjct 1786  GTGGAGGTGAAAGTCCTCAATGTCGACATTCCCCGATCTCGGATTTCGCTCGACCTCCTCCGGGTGTTG  1854

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