Nucleotide Global Alignment

Description

Query:
TRCN0000470961
Subject:
NR_027392.2
Aligned Length:
2398
Identities:
841
Gaps:
1513

Alignment

Query    1  ATGGCGGCGCACCTTAAGAAGCGGGTTTATGAGGAATTCACGAAAGTGGTTCAGCCACAGGAGGAAATTGCTAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TAAGAAACTCCGACTAACAAAACCAAGTAAATCTGCAGCACTCCACATAGATCTGTGTAAAGCTACCTCCCCAG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCGGAAAGCGTAGAGGGAGTAGTCAGG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  ATTCTCTTGGAACATTATTACAAGGAGAATGATCCATCTGTGAGACTGAAAATTGCATCATTGTTGGGTTTATT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  ATCAAAGACAGCAGGATTTTCACCAGACTGCATTATGGATGATGCCATCAACATCCTGCAGAATGAAAAGTCTC  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  ATCAAGTCCTAGCTCAACTGCTGGATACTTTGCTTGCAATTGGCACTAAGCTACCAGAGAATCAAGCTATCCAA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  ATGCGATTAGTTGATGTGGCCTGCAAGCATCTGACAGATACGTCTCATGGTGTAAGA--AATAAGTGCCTGCAG  516
                                                                  |||  ||..||.||      
Sbjct    1  ------------------------------------------------------AGAAGAAGGAGGGC------  14

Query  517  TTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAGGCCTAGCTGCCAGAGATGTCCA  590
                  ||      ||||     ||.|    ||         ||||||| .||||  ||||             
Sbjct   15  ------GG------TGGC-----GGGG----GT---------GATGCAG-CGGCC--GCTG-------------  42

Query  591  GAAGATTATAGGGGATTACTT----CAGTGACCAAGACC--CACGTGTCAG-AACAG------CAGCTATAAAA  651
                     ||||       |    |||.|.||..|.||  |.||.|.|.| |.|||      |||||..|.||
Sbjct   43  ---------AGGG-------TGGCGCAGGGGCCCCGGCCAGCCCGGGGCTGCAGCAGTGCGGACAGCTCCAGAA  100

Query  652  GC-CAT-GTTGCAGCTCCATGAAAGAGGACTGAAATTACACCAAACAATTTATAATCAGGCCTGTAAATTACTC  723
            || ||| |  |||.||||||          ||..|                        |||||       |.|
Sbjct  101  GCTCATCG--GCATCTCCAT----------TGGCA------------------------GCCTG-------CGC  131

Query  724  --TCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGC--------TCT  787
              .|||...||      |||||||||.||      |||||.|        |.|.|||...|||        ...
Sbjct  132  GGGCTGGGCAC------CAAGTGCGCTGT------GTCCAAC--------GACCTCACCGAGCAGGAGATACGG  185

Query  788  ATCCTGAAAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATT  861
            |.|||| .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct  186  ACCCTG-GAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGAAAAATT  258

Query  862  TGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGT  935
            ||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct  259  TGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCATGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGT  332

Query  936  CAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATG  1009
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  333  CAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATG  406

Query 1010  AGCGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAA  1083
            |||||||||||||||||||||||||.||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct  407  AGCGTGCCAAGGAACTTTACAGTTCAGGGGAGTTTTCCAGTGGCAGAAAGTGGGAAGATGATGCTCCCAAGGAA  480

Query 1084  GAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGA  1157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  GAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGA  554

Query 1158  GATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGA  1231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  555  GATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGA  628

Query 1232  AGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATG  1305
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct  629  AGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCCATACATACCATG  702

Query 1306  AGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATC  1379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct  703  AGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCAGC  776

Query 1380  CAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTG  1453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  777  CAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTG  850

Query 1454  CATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAG------------  1515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct  851  CATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTT  924

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct  925  CTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACAC  998

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct  999  AGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTC  1072

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1073  CAACAATGCGAGCATTGTTCTCAGATCACACCGTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTT  1146

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1147  GTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGA  1220

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1221  TCCTTCGCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCC  1294

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1295  AGGAGCTGCTGGAATTCACCATCAGGCCTTGCAGGAAAAGTCGTGGAATGTAGCTGCCCCTTCGTATTTGAAGC  1368

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1369  AGAGTGATTTGGCCTCAGCAGCAGCAAAACAGACTTTACCCCTTATTTGGGATGTGTGAAAAATTTTTACAGGA  1442

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1443  AGTAGACTTTTTTCAGAGGTATTTCATCGCTGATTTGCCCCACTTGCAGGACAGCTTTGTGGACAAACTCCTTG  1516

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1517  ACCTTATGCCCCGACTCATGACATCCAAACCTGCAGAAGTGGTCAAAATTCTACAGACCATGCTGCGACAGAGT  1590

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1591  GCCTTTCTGCATCTCCCACTTCCAGAGCAGATCCACAAAGCCTCAGCCACCATCATTGAGCCAGCGGGCGAGTC  1664

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1665  AGACAACCCTTTGCAGTTTAACTCTGGGTTGGTGGTTGCCCTGGATGTTGATGCAACCCTGGAGCATGTGCAGG  1738

Query 1516  ------------------------------  1515
                                          
Sbjct 1739  ATCCTCAGAACACTGTTAAGGTCCAGGTCT  1768

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.