Nucleotide Global Alignment

Description

Query:
TRCN0000470961
Subject:
XM_006507180.1
Aligned Length:
2892
Identities:
1360
Gaps:
1404

Alignment

Query    1  ATGGCGGCGCACCTTAAGAAGCGGGTTTATGAGGAATTCACGAAAGTGGTTCAGC--CA-CAGGAGGAAATTGC  71
            ||||||||||||||.||.||||||||.||||||||.|||||.|||||||||||||  || ||||||||||||||
Sbjct    1  ATGGCGGCGCACCTGAAAAAGCGGGTGTATGAGGAGTTCACTAAAGTGGTTCAGCAGCAGCAGGAGGAAATTGC  74

Query   72  TACTAAGAAACTCCGACTAACAAAACCAAGTAAATCTGCAGCACTCCACATAGATCTGTGTAAAGCTACCTCCC  145
            |||.|||||.||||||.|||||||.||.||.||||||||.||.|||||||||||||||||||||||.|||||||
Sbjct   75  TACCAAGAAGCTCCGATTAACAAAGCCGAGCAAATCTGCCGCTCTCCACATAGATCTGTGTAAAGCCACCTCCC  148

Query  146  CAGCAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCGGAAAGCGTAGAGGGAGTAGTC  219
            ||||||||||||||||.|||.|.||||||||||||||.||||||||.||.||.||.||.||.|||||.||||||
Sbjct  149  CAGCAGATGCTTTGCAGTACCTACTCCAGTTTGCCAGAAAGCCTGTAGAAGCAGAGAGTGTGGAGGGGGTAGTC  222

Query  220  AGGATTCTCTTGGAACATTATTACAAGGAGAATGATCCATCTGTGAGACTGAAAATTGCATCATTGTTGGGTTT  293
            |||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||.|.|||||.||
Sbjct  223  AGGATTCTCTTGGAACATTATTACAAGGAAAATGATCCATCTGTGAGACTGAAAATTGCATCACTCTTGGGATT  296

Query  294  ATTATCAAAGACAGCAGGATTTTCACCAGACTGCATTATGGATGATGCCATCAACATCCTGCAGAATGAAAAGT  367
            ||||||||||||.||||||||.||.|||||||||||.|||||.||.|||||.|||||.||.|||||||||||||
Sbjct  297  ATTATCAAAGACGGCAGGATTCTCTCCAGACTGCATAATGGACGACGCCATTAACATACTACAGAATGAAAAGT  370

Query  368  CTCATCAAGTCCTAGCTCAACTGCTGGATACTTTGCTTGCAATTGGCACTAAGCTACCAGAGAATCAAGCTATC  441
            ||||.|||||.|||||||||||.|||||.|||||||||||||||||||.|||.||||||||.||||||||||.|
Sbjct  371  CTCACCAAGTGCTAGCTCAACTACTGGACACTTTGCTTGCAATTGGCAGTAAACTACCAGAAAATCAAGCTACC  444

Query  442  CAAATGCGATTAGTTGATGTGGCCTGCAAGCATCTGACAGATACGTCTCATGGTGTAAGAAATAAGTGCCTGCA  515
            |||.||||||||||.|||||||||||||||||.|||||||||||.||.|||||||||||||||||||||.||||
Sbjct  445  CAAGTGCGATTAGTGGATGTGGCCTGCAAGCACCTGACAGATACTTCCCATGGTGTAAGAAATAAGTGCTTGCA  518

Query  516  GTTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAGGCCTAGCTGCCAGAGATGTCC  589
            .|||||||||||||||||||||||||||||||||||||||||||||.|.||||||..|||||||||||||||.|
Sbjct  519  ATTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATACTGAAGGCTCAGCTGCCAGAGATGTTC  592

Query  590  AGAAGATTATAGGGGATTACTTCAGTGACCAAGACCCACGTGTCAGAACAGCAGCTATAAAAGCCATGTTGCAG  663
            ||||.|||||.|||||..||||||||||||||||.|||||                           |||||||
Sbjct  593  AGAAAATTATCGGGGACCACTTCAGTGACCAAGATCCACG---------------------------GTTGCAG  639

Query  664  CTCCATGAAAGAGGACTGAAATTACACCAAACAATTTATAATCAGGCCTGTAAATTACTCTCTGATGACTATGA  737
            ||||||||||||||||||||.|||||||||||.|||||||||||||||||||||||.||||||||||||||.||
Sbjct  640  CTCCATGAAAGAGGACTGAAGTTACACCAAACGATTTATAATCAGGCCTGTAAATTGCTCTCTGATGACTACGA  713

Query  738  ACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGCTCTATCCTGAAAGCATTGTCCCAATTC  811
            .||.||||||||||||||||||||||||||||||||.|||||.||||||||||||||.||.||.||.|||||.|
Sbjct  714  GCAGGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTTGTCAGCCAGCTCTATCCTGAGAGTATAGTTCCAATAC  787

Query  812  CTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATTTGTCACATGGTCAGTGATGGCTCT  885
            |.|||||||||||||||||.||..|||||||||||||.|||||.||||||||.||||||||||||||||||||.
Sbjct  788  CGTCTTCTAATGAAGAAATCCGTCTAGTTGATGATGCATTTGGAAAAATTTGCCACATGGTCAGTGATGGCTCC  861

Query  886  TGGGTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGAC  959
            |||||||||||||||||.||.|||||.||.||||||||.|||||||||||.||.||||||||||||||||||||
Sbjct  862  TGGGTGGTTCGTGTTCAAGCTGCAAAGCTATTGGGCTCGATGGAGCAAGTTAGCTCTCATTTCTTGGAGCAGAC  935

Query  960  CCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTT  1033
            .||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct  936  TCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGCACTGCACATGAGCGTGCCAAGGAACTTTACAGTT  1009

Query 1034  CGGGGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAAC  1107
            ||||||||||||||||||||||.||.|||||||||||||||||||||||||||.||||.||.|||||.||||||
Sbjct 1010  CGGGGGAGTTTTCCAGTGGCAGGAAATGGGGAGATGATGCTCCCAAGGAAGAAATAGACACGGGGGCCGTGAAC  1083

Query 1108  TTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGC  1181
            .||||.|||||||||||.||||||||.||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 1084  CTGATAGAGTCAGGAGCGTGTGGAGCCTTTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGCATTGCTGC  1157

Query 1182  TGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACA  1255
            |||||||||.||.||||||.|.|||||||||||.||||||||||||||.|||||||||||.||.||||||||||
Sbjct 1158  TGTGGAGGCTCTGTGCATGCTAGCCCAGTCTTCGCCCTCTTTTGCTGAAAAGTGCCTTGACTTTCTAGTTGACA  1231

Query 1256  TGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATGAGAAAAATCTCTAACAACATCACC  1329
            |||||||.|||||||||||||||||.|||||||||||.|||||.|||||||||||||||||||||||.||||||
Sbjct 1232  TGTTCAATGATGAAATTGAGGAAGTGCGTCTGCAGTCCATACACACCATGAGAAAAATCTCTAACAATATCACC  1305

Query 1330  CTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAGAGATATTCGAGAGGCTCTTCA  1403
            ||||||||||||||||||||||||||||||||||||.||||||||||||||||.||||||.|||||||||||||
Sbjct 1306  CTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGTTAGAGGATTCATCCAGGGATATTAGAGAGGCTCTTCA  1379

Query 1404  TGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATT  1477
            |||||||||||||||.||||||||.|||||||||||||||||||||||||||.||||||||||.||.|||||..
Sbjct 1380  TGAACTCTTATGCTGCACTAATGTCTCAACCAAAGAAGGGATTCATCTTGCACTGGTGGAGCTTCTAAAAAACC  1453

Query 1478  TAACCAAGTACCCTACTGATAGGGACTCCATATGGAAG------------------------------------  1515
            |||||||||||||||||||.||||||||||||||||||                                    
Sbjct 1454  TAACCAAGTACCCTACTGACAGGGACTCCATATGGAAGTGCTTGAAGTTTCTGGGCAGCCGGCATCCGACCCTC  1527

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1528  GTGCTTCCTCTGGTGCCAGAGCTCTTGAGCACGCACCCATTTTTTGATACTGCTGAACCAGACATGGACGATCC  1601

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1602  AGCTTACATTGCAGTTTTAGTTCTTATCTTCAATGCTGCTAAGACCTGTCCTACAATGCCAGCACTCTTCTCAG  1675

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1676  ACCACACCCTCAGGCACTATGCCTACCTCCGAGACAGCCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGG  1749

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1750  AGAAAACTGGTGTCCTCCACTGTCCCCTCTAACATCACCCCTCATGAAGATCCTTCCCAGCAGTTCCTGCAGCA  1823

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1824  GAGCCTTGAAAGGGTGTATAGTGTTCAGCACCTAGATCCTCAGGGGGCCCAAGAGCTGCTGGAATTCACCATCA  1897

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1898  GAGATCTGCAAAGACTTGGAGAGCTTCAGTCTGAATTGGCAGGAGTAGCTGACTTCTCTGCCACCTATCTTCAG  1971

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1972  TGTCAACTGCTCCTCATTAAGGCCTTGCAGGAAAAGCTGTGGAATGTGGCTGCCCCCTTGTATCTAAAGCAGAG  2045

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2046  TGATTTGGCCTCAGCAGCAGCAAAACAGATCATGGAGGAAACCTACAAAATGGAGTTTATGTACAGTGGTGTGG  2119

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2120  AAAACAAGCAGGTTGTGATCATACAGCACATGAGGCTTCAGGCCAAAGCTCTGCAACTCATAGTAACTGCACGA  2193

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2194  ACTACTCGAGGAGTAGACCCCTTATTTGGAATGTGTGAAAAATTTTTACAGGAAGTGGATTTTTTTCAGAGGTG  2267

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2268  TTTCATTGCGGATTTGCCCCACCTTCAAGATAGCTTTGTGGACAAACTCCTTGATCTTATGCCCCGACTCATGG  2341

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2342  CATCTAAACCTGTTGAAGTGATCAAAATTCTGCAGACAATGCTGCGGCAGAGCACCTTCTTACATCTTCCGCTT  2415

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2416  CCAGAGCAGATACACAAAGCCTCAGCCACCATTATTGAGCCGGCAGGAGAGTCAGACAATCCTTTGCGGTTTAC  2489

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2490  ATCTGGGTTGGTGGTAGCCTTGGATGTGGATGCAACCCTGGAACATGTGCAAGACCCCCAGAACACTGTCAAGG  2563

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2564  TTCAGGTCTTATATCCAGATGGCCAGGCTCAGATGATCCACCCCAAGCCAGCAGATTTCCGGAATCCTGGCCCA  2637

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2638  GGACGGCACCGTCTCCTCACTCAGGTGTACCTCTCCCATACTGCCTGGACAGAACCATGCCAAGTGGAAGTGAG  2711

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2712  GCTATTGCTGGCCTACAACTCCGGTGCACGAATTCCAAAATCTCCATGGCTGGAGGGTAGTGAGATGTCACCAC  2785

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2786  AGGTGGAAACCAGCATCGAGGGCACCATCCCCTTCAGTAAGCCTGTGAAAGTCTACATAATGCCCAAGCCTGCA  2859

Query 1516  ------  1515
                  
Sbjct 2860  AGACGC  2865

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