Nucleotide Global Alignment

Description

Query:
TRCN0000472827
Subject:
NR_120640.1
Aligned Length:
3221
Identities:
1902
Gaps:
1306

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTAGGAAAACCCCAGGCACTTTCGGAGGGGTTCTGCCGGCAGTCACGGCGTCGGGAGGAAGACATCCCCACCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCCCTTCCCTTTCTCCCCGCTTCCGCACATCCACGCTTCAGCGCGCCTTTGGCTTCTGTTTTTCCATTTCTGAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GACTGGGCCCGCCATCCTCCAGGCTCCCCTCGCCGTCGCTGCAGCTCGTAGCCGTTTACATCGGGCTTTCGCAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CACCCCTTAGGTGGGAGCGTTGTTATAATCCGGTTCCGGGGAAGCCCAAAGGGATCAACGACTTCCTCAACGAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACACAGCTAGTAAGAAATGGGGCCGGGATGCCCTCAAAGCCATTTTTCAGTTCAGCTGTGCCCCATCAGGTGTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CAGTTCAGAGAAAGACTCCTGGAGTTCCTTCTCATTGTTAGAAGAGTGAAGTTGTCAAGAAGAGCAAATGTACC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TTCCACAGAGCTGGGAAATTATTTTGTCAAAAACTCTTGTACCCAAGTTTGAACAACGCTATCAGATGACTCAG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCTAGCTCACCTGACTCCAGCTCTGTTTCAAATTTTGAGCTCTAAGCTTTGGTGGCAATAACTCTGGCAGTGAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AAAACCCTCAGGCTTGTAGATAGCTTTGCTTCTTTGTCTTCTTTTGCTTCATCGTTATCATCCTTCATCATTCT  666

Query    1  -------------------------ATGGCGGCGGCCTCTGC------------GGTGTCGGT--GCTGCT---  32
                                     |.||| .|.|.||||||            |||.|..||  |||.||   
Sbjct  667  GGAAAGATTGACAGTTTAGTGTTCAAGGGC-ACAGACTCTGCAGTCAAGGCTGAGGTCTTAGTTAGCTACTCAC  739

Query   33  --GGTGGCGGCGGAGAGGAACCGGTGGCATCGTCTCCCGAGCCTGCTCCTGCCGCCGAGGACATGGGTGTGGAG  104
              ||||                .|||.|.|.|                          ||||||||||||||||
Sbjct  740  TAGGTG----------------TGTGACTTTG--------------------------GGACATGGGTGTGGAG  771

Query  105  GCAAAGAACCATGAAGTACACAACAGCCACAGGAAGAAACATTACCAAGGTCCTCATTGCAAACAGAGGAGAAA  178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  772  GCAAAGAACCATGAAGTACACAACAGCCACAGGAAGAAACATTACCAAGGTCCTCATTGCAAACAGAGGAGAAA  845

Query  179  TTGCCTGCAGGGTGATGCGCACAGCCAAAAAACTGGGTGTACAGACTGTGGCGGTTTATAGTGAGGCTGACAGA  252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  846  TTGCCTGCAGGGTGATGCGCACAGCCAAAAAACTGGGTGTACAGACTGTGGCGGTTTATAGTGAGGCTGACAGA  919

Query  253  AATTCCATGCATGTAGATATGGCAGATGAAGCATATTCCATCGGCCCCGCTCCCTCCCAGCAGAGCTACCTATC  326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  920  AATTCCATGCATGTAGATATGGCAGATGAAGCATATTCCATCGGCCCCGCTCCCTCCCAGCAGAGCTACCTATC  993

Query  327  TATGGAGAAAATCATTCAAGTGGCCAAGACCTCTGCTGCACAGGCTATCCATCCAGGATGCGGTTTTCTTTCAG  400
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct  994  TATGGAGAAAATCATTCAAGTGGCCAAGACCTCTGCTGCACAGGCTATCCATCCAGGATGCGGTTTTCTCTCAG  1067

Query  401  AAAACATGGAATTTGCTGAACTTTGTAAGCAAGAAGGAATTATTTTTATAGGCCCTCCTCCATCTGCAATTAGA  474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068  AAAACATGGAATTTGCTGAACTTTGTAAGCAAGAAGGAATTATTTTTATAGGCCCTCCTCCATCTGCAATTAGA  1141

Query  475  GACATGGGTATAAAGAGCACATCCAAATCCATAATGGCTGCTGCTGGAGTACCTGTTGTGGAGGGTTATCATGG  548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142  GACATGGGTATAAAGAGCACATCCAAATCCATAATGGCTGCTGCTGGAGTACCTGTTGTGGAGGGTTATCATGG  1215

Query  549  TGAGGACCAATCAGACCAGTGCCTGAAGGAACACGCCAGGAGAATTGGCTATCCTGTCATGATTAAAGCCGTCC  622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216  TGAGGACCAATCAGACCAGTGCCTGAAGGAACACGCCAGGAGAATTGGCTATCCTGTCATGATTAAAGCCGTCC  1289

Query  623  GGGGTGGAGGAGGAAAAGGAATGAGGATTGTTAGATCAGAACAAGAATTTCAAGAACAGTTAGAGTCAGCACGG  696
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290  GGGGTGGAGGAGGAAAAGGAATGAGGATTGTTAGATCAGAACAAGAATTTCAAGAACAGTTAGAGTCAGCACGG  1363

Query  697  AGAGAAGCTAAGAAGTCTTTCAATGATGATGCTATGCTGATCGAGAAGTTTGTAGACACACCGAGGCATGTAGA  770
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364  AGAGAAGCTAAGAAGTCTTTCAATGATGATGCTATGCTGATCGAGAAGTTTGTAGACACACCGAGGCATGTAGA  1437

Query  771  AGTCCAGGTGTTTGGTGATCACCATGGCAATGCTGTGTACTTGTTTGAAAGAGACTGTAGTGTGCAGAGGCGAC  844
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438  AGTCCAGGTGTTTGGTGATCACCATGGCAATGCTGTGTACTTGTTTGAAAGAGACTGTAGTGTGCAGAGGCGAC  1511

Query  845  ATCAGAAGATCATTGAGGAGGCCCCAGCGCCTGGTATTAAATCTGAAGTAAGAAAAAAGCTGGGAGAAGCTGCA  918
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512  ATCAGAAGATCATTGAGGAGGCCCCAGCGCCTGGTATTAAATCTGAAGTAAGAAAAAAGCTGGGAGAAGCTGCA  1585

Query  919  GTCAGAGCTGCTAAAGCTGTAAATTATGTTGGAGCAGGGACTGTGGAGTTTATTATGGACTCAAAACATAATTT  992
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586  GTCAGAGCTGCTAAAGCTGTAAATTATGTTGGAGCAGGGACTGTGGAGTTTATTATGGACTCAAAACATAATTT  1659

Query  993  CTGTTTCATGGAGATGAATACAAGGCTGCAAGTGGAACATCCTGTTACTGAGATGATCACAGGAACTGACTTGG  1066
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660  CTGTTTCATGGAGATGAATACAAGGCTGCAAGTGGAACATCCTGTTACTGAGATGATCACAGGAACTGACTTGG  1733

Query 1067  TGGAGTGGCAGCTTAGAATTGCAGCAGGAGAGAAGATTCCTTTGAGCCAGGAAGAAATAACTCTGCAGGGCCAT  1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734  TGGAGTGGCAGCTTAGAATTGCAGCAGGAGAGAAGATTCCTTTGAGCCAGGAAGAAATAACTCTGCAGGGCCAT  1807

Query 1141  GCCTTCGAAGCTAGAATATATGCAGAAGATCCTAGCAATAACTTCATGCCTGTGGCAGGCCCATTAGTGCACCT  1214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1808  GCCTTCGAAGCTAGAATATATGCAGAAGATCCTAGCAATAACTTCATGCCTGTGGCAGGCCCATTAGTGCACCT  1881

Query 1215  CTCTACTCCTCGAGCAGACCCTTCCACCAGGATTGAAACTGGAGTACGGCAAGGAGACGAAGTTTCCGTGCATT  1288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1882  CTCTACTCCTCGAGCAGACCCTTCCACCAGGATTGAAACTGGAGTACGGCAAGGAGACGAAGTTTCCGTGCATT  1955

Query 1289  ATGACCCCATGATTGCGAAGCTGGTCGTGTGGGCAGCAGATCGCCAGGCGGCATTGACAAAACTGAGGTACAGC  1362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1956  ATGACCCCATGATTGCGAAGCTGGTCGTGTGGGCAGCAGATCGCCAGGCGGCATTGACAAAACTGAGGTACAGC  2029

Query 1363  CTTCGTCAGTACAATATTGTTGGACTGCCCACCAACATTGACTTCTTACTCAACCTGTCTGGCCACCCAGAGTT  1436
            |||||||||||||||                                                           
Sbjct 2030  CTTCGTCAGTACAAT-----------------------------------------------------------  2044

Query 1437  TGAAGCTGGGAACGTGCACACTGATTTCATCCCTCAACACCACAAACAGTTGTTGCTCAGTCGGAAGGCTGCAG  1510
                                                                                      
Sbjct 2045  --------------------------------------------------------------------------  2044

Query 1511  CCAAAGAGTCTTTATGCCAGGCAGCCCTGGGTCTCATCCTCAAGGAGAAAGCCATGACCGACACTTTCACTCTT  1584
                                                                                      
Sbjct 2045  --------------------------------------------------------------------------  2044

Query 1585  CAGGCACATGATCAATTCTCTCCATTTTCGTCTAGCAGTGGAAGAAGACTGAATATCTCGTATACCAGAAACAT  1658
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2045  ----------ATCAATTCTCTCCATTTTCGTCTAGCAGTGGAAGAAGACTGAATATCTCGTATACCAGAAACAT  2108

Query 1659  GACTCTTAAAGATGGTAAAAAC----------------------------------------------------  1680
            ||||||||||||||||||||||                                                    
Sbjct 2109  GACTCTTAAAGATGGTAAAAACAGTTTTCGTCTCCTCGGATAATCAACCATTTCCATACTCATGTAATCTAGGC  2182

Query 1681  ---------------------------------------------AATGTAGCCATAGCTGTAACGTATAACCA  1709
                                                         |||||||||||||||||||||||||||||
Sbjct 2183  ATACTCTGGAGTTATTACAGGTTTGGTTCCAGACCACTACAATAAAATGTAGCCATAGCTGTAACGTATAACCA  2256

Query 1710  TGATGGGTCTTATAGCATGCAGATTGAAGATAAAACTTTCCAAGTCCTTGGTAATCTTTACAGCGAGGGAGACT  1783
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2257  TGATGGGTCTTATAGCATGCAGATTGAAGATAAAACTTTCCAAGTCCTTGGTAATCTTTACAGCGAGGGAGACT  2330

Query 1784  GCACTTACCTGAAATGTTCTGTTAATGGAGTTGCTAGTAAAGCGAAGCTGATTATCCTGGAAAACACTATTTAC  1857
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2331  GCACTTACCTGAAATGTTCTGTTAATGGAGTTGCTAGTAAAGCGAAGCTGATTATCCTGGAAAACACTATTTAC  2404

Query 1858  CTATTTTCCAAGGAAGGAAGTATTGAGATTGACATTCCAGTCCCCAAATACTTATCTTCTGTGAGCTCACAAGA  1931
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2405  CTATTTTCCAAGGAAGGAAGTATTGAGATTGACATTCCAGTCCCCAAATACTTATCTTCTGTGAGCTCACAAGA  2478

Query 1932  AACTCAGGGCGGCCCCTTAGCTCCTATGACTGGAACCATTGAAAAGGTGTTTGTCAAAGCTGGAGACAAAGTGA  2005
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2479  AACTCAGGGCGGCCCCTTAGCTCCTATGACTGGAACCATTGAAAAGGTGTTTGTCAAAGCTGGAGACAAAGTGA  2552

Query 2006  AAGCGGGAGATTCCCTCATGGTTATGATCGCCATGAAGATGGAGCATACCATAAAGTCTCCAAAGGATGGCACA  2079
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2553  AAGCGGGAGATTCCCTCATGGTTATGATCGCCATGAAGATGGAGCATACCATAAAGTCTCCAAAGGATGGCACA  2626

Query 2080  GTAAAGAAAGTGTTCTACAGAGAAGGTGCTCAGGCCAACAGACACACTCCTTTAGTCGAGTTTGAGGAGGAAGA  2153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2627  GTAAAGAAAGTGTTCTACAGAGAAGGTGCTCAGGCCAACAGACACACTCCTTTAGTCGAGTTTGAGGAGGAAGA  2700

Query 2154  ATCAGACAAAAGGGAATCGGAA----------------------------------------------------  2175
            ||||||||||||||||||||||                                                    
Sbjct 2701  ATCAGACAAAAGGGAATCGGAATAAACTCCAGCAAGGAAATGGCCAGTTAAGTAGTGTCTTCTCTCTCCACCAA  2774

Query 2176  --------------------------------------------------------------------------  2175
                                                                                      
Sbjct 2775  AAAGAGGAAGTGCCTCCAGCTTTTCTGGGGGTCTCATAAAGAGCAGTTTTACTAAATGATTGTATGCTTATGCT  2848

Query 2176  --------------------------------------------------------------------------  2175
                                                                                      
Sbjct 2849  GAACACCTTTCATATTGGAGAATCATGCATTTGGGTCACTAATTATCTCAAAATATTTCATACTAATAAAGTTG  2922

Query 2176  ---------------------------------------  2175
                                                   
Sbjct 2923  AATTATTTTTTATTGGAAGCCAAAAAAAAAAAAAAAAAA  2961

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.