Nucleotide Global Alignment

Description

Query:
TRCN0000473331
Subject:
XM_011247716.1
Aligned Length:
1600
Identities:
1175
Gaps:
305

Alignment

Query    1  ATGCCAGAGTTTCGCTCTGTTGCCCAGGCTGCAGTGCAGTGGTGTGATCTTGGCTCGCTGCAACTTCCGCCTCC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CAGGTTCAAGGGATTCTTGTGCCTCAGCCTCCCGAGTAGCTGGAATT-ACAGTTCAAGACCCGGCAGGCCCCCT  147
             |.| .|||||.|                     |..|||||   || ||||||||||.||.||||||||||||
Sbjct    1  -ATG-ACAAGGAA---------------------ACAAGCTG---TTAACAGTTCAAGGCCTGGCAGGCCCCCT  48

Query  148  AAGCGTTCTTTGGGAGTGTTGCAGGAAAATGCCCGCCTTCTGACCCATGCAGTCCCAGGCCTCTTATCGCCAGG  221
            |||||||||||||||||.|||||.||.||||||||.||||||.|||||||||||||||||||||||||.|||||
Sbjct   49  AAGCGTTCTTTGGGAGTATTGCAAGATAATGCCCGACTTCTGCCCCATGCAGTCCCAGGCCTCTTATCACCAGG  122

Query  222  ACTTATCACTCCGACAGGTATAACAGCTGCAGCGATGGCTGAGGCGATGAAACTTCAGAAGATGAAGCTTATGG  295
            |||.||||||||.||||||||.|||||||||||||||||||||||.|||||.||.|||||||||||||||||||
Sbjct  123  ACTGATCACTCCAACAGGTATCACAGCTGCAGCGATGGCTGAGGCCATGAAGCTCCAGAAGATGAAGCTTATGG  196

Query  296  CTATGAACACTCTTCAGGGAAATGGAAGCCAAAATGGGACCGAATCAGAGCCTGATGATCTTAATTCTAACACA  369
            |.|||||.|||||||||||.||||||||||||||||||||.||.||||||||.|||||.||||||||||..|||
Sbjct  197  CAATGAATACTCTTCAGGGTAATGGAAGCCAAAATGGGACTGAGTCAGAGCCAGATGACCTTAATTCTACGACA  270

Query  370  GGTGGAAGTGAATCCTCCTGGGATAAAGATAAGATGCAGTCTCCATTTGCTGCACCTGGACCCCAACATGGAAT  443
            |||||||||||||||||||||||||||||||||||.||.||||||.|||||||..|||||||.|||||||||||
Sbjct  271  GGTGGAAGTGAATCCTCCTGGGATAAAGATAAGATACAATCTCCACTTGCTGCTTCTGGACCTCAACATGGAAT  344

Query  444  TGCTCATGCAGCCCTAGCTGGCCAGCCAGGCATTGGGGGTGCTCCAACCCTCAATCCACTGCAGCAGAACCACC  517
            ||||||||||||.||.|||||.|||||||||.||||.||||||||.|||||.||||||||.||||||||.||||
Sbjct  345  TGCTCATGCAGCACTTGCTGGTCAGCCAGGCCTTGGAGGTGCTCCGACCCTTAATCCACTTCAGCAGAATCACC  418

Query  518  TGCTAACCAATAGACTGGATCTGCCATTTATGATGATGCCTCATCCCCTACTTCCAGTCAGCTTACCTCCTGCA  591
            ||||||.||||.|.||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  419  TGCTAAGCAATCGTCTGGATCTCCCATTTATGATGATGCCTCATCCCCTACTTCCAGTCAGCTTACCTCCTGCA  492

Query  592  TCAGTTGCCATGGCAATGAATCAGATGAACCATCTCAATACTATTGCCAACATGGCTGCTGCAGCACAGATTCA  665
            |||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||
Sbjct  493  TCAGTTGCCATGGCAATGAATCAGATGAATCATCTCAATACTATTGCCAACATGGCTGCTGCAGCCCAGATTCA  566

Query  666  CAGTCCACTCTCCAGAGCTGGTACCTCTGTTATAAAGGAGCGGATCCCAGAGAGTCCTTCTCCTGCTCCTTCTC  739
            ||||||||||||||||||||||.||||||||||||||||.|||||||||||||||||||||||||||||.||||
Sbjct  567  CAGTCCACTCTCCAGAGCTGGTGCCTCTGTTATAAAGGAACGGATCCCAGAGAGTCCTTCTCCTGCTCCCTCTC  640

Query  740  TAGAAGAGAATCATCGTCCTGGGAGCCAGACCTCTTCCCACACCAGCAGCAGTGTGTCCAGCTCTCCCTCTCAG  813
            |.|||||||.||||||||||||||||||||||||.||||||.|.||||||||||||||||||||||||||.|||
Sbjct  641  TGGAAGAGAGTCATCGTCCTGGGAGCCAGACCTCCTCCCACCCAAGCAGCAGTGTGTCCAGCTCTCCCTCGCAG  714

Query  814  ATGGATCATCATTTGGAAAGAATGG-------------------------------------------------  838
            |||||||||||||..||.|||||||                                                 
Sbjct  715  ATGGATCATCATTCAGAGAGAATGGTTATGATGCCCAACAATCGAGAAGAGCTTATTGTTGACCAAGATAATGG  788

Query  839  --------------------------------------------------------------------------  838
                                                                                      
Sbjct  789  ACAAAGCATAAAAAAATTCCAGAGGGATAATAAAGATATCCAATTGTCCCAGCACCATTTGTTGAACACTTTTC  862

Query  839  ---------------------------------------------------AAGAGGTACCAGTTCAAATTCCA  861
                                                               ||||.|||||||.||||||.|||
Sbjct  863  TTCACTGGATTGAGTTGGCACCATTATCAAAAAAATCACTTCACCATCAAAAAGAAGTACCAGCTCAAATCCCA  936

Query  862  ATAATGAAGTCACCCTTGGACAAGATACAGCTGACTCCTGGGCAGGCATTGCCCGCTGGATTCCCTGGACCATT  935
            .|.|||||||||||||||||.|||||.|||.||.|||||||.||||||||||...|||||||||||||||||||
Sbjct  937  GTCATGAAGTCACCCTTGGATAAGATCCAGTTGGCTCCTGGACAGGCATTGCATCCTGGATTCCCTGGACCATT  1010

Query  936  CATTTTTGCTGATAGTCTGTCCTCCGTGGAGACTCTGTTGACCAACATTCAG----------------------  987
            |||||||||.||||||||.||.||.|||||||||||||||||||||||||||                      
Sbjct 1011  CATTTTTGCAGATAGTCTATCTTCTGTGGAGACTCTGTTGACCAACATTCAGGTCAACAATATTTCTATAAACA  1084

Query  988  --------GGTCTGCTGAAAGTTGCTTTGGATAATGCTCGCATCCAGGAGAAGCAGATTCAACAAGAAAAGAAG  1053
                    |||||.||||||||.|||||||||||||||||.||||||||||||||||||||.||.|||||||||
Sbjct 1085  AAATAAATGGTCTACTGAAAGTGGCTTTGGATAATGCTCGTATCCAGGAGAAGCAGATTCAGCAGGAAAAGAAG  1158

Query 1054  GAGCTGCGACTGGAGCTCTATAGAGAGAGAGAAATTAGAGAAAACCTTGAAAGACAACTTGCAGTTGAGCTTCA  1127
            ||.||||||.|.|||||||..|||||.||||||||||||||||||||.||..||||||||||||||||||||||
Sbjct 1159  GAACTGCGAATAGAGCTCTTCAGAGAAAGAGAAATTAGAGAAAACCTGGAGCGACAACTTGCAGTTGAGCTTCA  1232

Query 1128  AAGCAGAACTACTATGCAAAAGCGCCTGAAGAAGGAGAAAAAAACCAAGAGAAAATTGCAGGAAGCCTTGGAAT  1201
            ||||||||.|||.|||||||||||.|||||.||.||||||||..|.|||||||||.|.||||||||||||||||
Sbjct 1233  AAGCAGAAGTACAATGCAAAAGCGTCTGAAAAAAGAGAAAAAGGCTAAGAGAAAACTTCAGGAAGCCTTGGAAT  1306

Query 1202  TTGAATCAAAGCGCCGGGAGCAAGTGGAGCAGGCACTTAAGCAAGCCACCACTAGTGACAGTGGCCTGAGGATG  1275
            ||||||||||||||||.||||||||||||||.||||||||.|||||.||..||.||||||||||.|||||.|||
Sbjct 1307  TTGAATCAAAGCGCCGCGAGCAAGTGGAGCAAGCACTTAAACAAGCTACATCTGGTGACAGTGGACTGAGAATG  1380

Query 1276  TTAAAAGATACTGGAATTCCAGATATTGAAATAGAAAACAATGGGACTCCTCATGATAGTGCTGCTATGCAAGG  1349
            |||||||||.||||||||||||||||||||||||||||||.|||.||.||.|||||.|||||||||||||||||
Sbjct 1381  TTAAAAGATTCTGGAATTCCAGATATTGAAATAGAAAACAGTGGAACGCCGCATGACAGTGCTGCTATGCAAGG  1454

Query 1350  AGGTAACTATTACTGTTTAGAAATGGCACAACAGTTGTATTCAGCC  1395
            ||||||||||||||||||||.|||||||||.|||||||.|||||||
Sbjct 1455  AGGTAACTATTACTGTTTAGCAATGGCACAGCAGTTGTGTTCAGCC  1500

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