Nucleotide Global Alignment

Description

Query:
TRCN0000473910
Subject:
NM_001289621.1
Aligned Length:
1837
Identities:
1530
Gaps:
98

Alignment

Query    1  ATGCGGTATTCGCACCACTGTGAGCACCTTTTAGAGAGACTGAACAAACAGCGGGAAGCAGGTTTTCTCTGTGA  74
            ||||.||||||.||||||||||||||||||||||||||||||||.||.||.||||||||.||.|||||.||.||
Sbjct    1  ATGCAGTATTCACACCACTGTGAGCACCTTTTAGAGAGACTGAATAAGCAACGGGAAGCGGGATTTCTTTGCGA  74

Query   75  CTGTACCATAGTGATTGGGGAATTCCAGTTTAAAGCTCATAGGAATGTGCTGGCCTCCTTTAGTGAGTATTTTG  148
            |||||||.||||||||||.||||||||||||||.||.||||||||||||||.||||||||||||||||||||||
Sbjct   75  CTGTACCGTAGTGATTGGAGAATTCCAGTTTAAGGCGCATAGGAATGTGCTTGCCTCCTTTAGTGAGTATTTTG  148

Query  149  GTGCGATCTACAGAAGCACTTCTGAGAACAATGTCTTTCTTGATCAGAGTCAGGTGAAGGCTGATGGATTTCAG  222
            |.||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||.|||||||||
Sbjct  149  GGGCGATCTACAGAAGCACTTCTGAGAACAATGTTTTTCTTGATCAGAGTCAGGTGAAGGCTGACGGATTTCAG  222

Query  223  AAACTGTTGGAGTTTATATACACAGGAACTTTAAATCTTGACAGTTGGAATGTTAAAGAAATTCATCAGGCTGC  296
            ||||||||||||||||||||.|||||||||||||||||.|||||||||||||||||||||||.|||||||||||
Sbjct  223  AAACTGTTGGAGTTTATATATACAGGAACTTTAAATCTCGACAGTTGGAATGTTAAAGAAATCCATCAGGCTGC  296

Query  297  TGACTATCTCAAAGTGGAAGAGGTGGTCACTAAATGCAAAATAAAGATGGAAGATTTTGCTTTTATTGCTAATC  370
            |||||||||||||||.||||||||.||.||||||||.||||||||||||||.|||||.|||||.|||||||.||
Sbjct  297  TGACTATCTCAAAGTAGAAGAGGTAGTAACTAAATGTAAAATAAAGATGGAGGATTTCGCTTTCATTGCTAGTC  370

Query  371  CTTCTTCTACAGAGATATCTAGTATTACTGGAAACATTGAATTGAATCAACAGACTTGTCTTCTTACTCTGCGA  444
            |.||||||||.||.|||||||||||||||||||||||.|||||||||||||||.|.|||||||||||.||||||
Sbjct  371  CCTCTTCTACCGAAATATCTAGTATTACTGGAAACATCGAATTGAATCAACAGGCCTGTCTTCTTACCCTGCGA  444

Query  445  GATTATAATAATCGAGAGAAATCAGAAGTATCTACAGATTTGATTCAGGCAAATCCTAAACAAGGCGCGTTAGC  518
            ||||||||.|||||.||||||||||||||.||.||.||.|...||||||||||.|||||||.|.|.||.||..|
Sbjct  445  GATTATAACAATCGGGAGAAATCAGAAGTCTCCACGGACTCAGTTCAGGCAAACCCTAAACCACGGGCATTGAC  518

Query  519  GAAAAAGTCATCTCAAACGAAAAAGAAGAAGAAGGCTTTCAACTCCCCGAAAACAGGGCAGAATAAAACAGTGC  592
            .||.||.||.|||||||..|||||||||||||||||.||||..||.|.||||.|||||||||..|||.||||||
Sbjct  519  AAAGAAATCGTCTCAAAGTAAAAAGAAGAAGAAGGCCTTCAGTTCTCAGAAACCAGGGCAGAGCAAAGCAGTGC  592

Query  593  AATATCCCAGTGACATCTTAGAGAATGCATCTGTTGAATTATTCCTAGA----TGCAAATAAACTGCCCACACC  662
            |.||.|||||||||.|..||||||..||.|||||.||||||||||||||    .||||.|    ||.||.||||
Sbjct  593  AGTACCCCAGTGACGTTCTAGAGAGCGCGTCTGTGGAATTATTCCTAGAGACGAGCAAGT----TGTCCTCACC  662

Query  663  TGTAGTAGAACAAGTTGCA--CAAATAAATGATAATTCAGAACTCGAGTTGACATCAGTTGTGGAAAATACTTT  734
            |||||||||.|||.|  ||  |||..||||||.|.|||||||||.||||||||.||.|||||||||||||||||
Sbjct  663  TGTAGTAGAGCAAAT--CATTCAAGGAAATGACAGTTCAGAACTTGAGTTGACCTCGGTTGTGGAAAATACTTT  734

Query  735  TCCAGCACAAGATATTGTGCACACTGTTACAGTGAAACGGAAACGTGGAAAATCACAGCCAAACTGTGCTCTGA  808
            ||||.|.||||||||||||||.|||||||||||.||||||||||||.|.|||||||||.||.|.||||||||||
Sbjct  735  TCCAACCCAAGATATTGTGCAAACTGTTACAGTCAAACGGAAACGTCGGAAATCACAGTCACATTGTGCTCTGA  808

Query  809  AAGAACACTCTATGTCTAATATAGCCAGCGTCAAGAGTCCTTATGAGGCGGAGAACTCCGGGGAAGAGCTGGAT  882
            ||||||||||.||||||||.||||||||.||.||||||||.||||||..|||||||.|||||||||||||||||
Sbjct  809  AAGAACACTCCATGTCTAACATAGCCAGTGTAAAGAGTCCATATGAGCTGGAGAACGCCGGGGAAGAGCTGGAT  882

Query  883  -CAGAGGTATTCCAAGGCCAAGCCAATGTGTAACACATGTGGGAAAGTGTTTTCAGAAGCCAGCAGTTTGAGAA  955
             || ||||.|||||||||||||||||||||.|||||.||.|||||.||||||||.|||||||||||..||.|||
Sbjct  883  GCA-AGGTTTTCCAAGGCCAAGCCAATGTGCAACACTTGCGGGAAGGTGTTTTCGGAAGCCAGCAGCCTGCGAA  955

Query  956  GGCACATGAGAATACATAAAGGAGTCAAACCTTACGTCTGCCACTTATGTGGAAAGGCATTTACCCAATGTAAC  1029
            ||||||||||||||||.|||||||||||.||.||||||||||||||.||||||||||||||||||||.||.|||
Sbjct  956  GGCACATGAGAATACACAAAGGAGTCAAGCCCTACGTCTGCCACTTGTGTGGAAAGGCATTTACCCAGTGCAAC  1029

Query 1030  CAGCTGAAAACGCATGTAAGAACTCATACAGGTGAGAAGCCATACAAATGTGAATTGTGTGATAAAGGATTTGC  1103
            ||.||.||.||||||||.||.|||||.|||||.||.|.||||||.|||||||||.|||||||||||||||||||
Sbjct 1030  CAACTAAAGACGCATGTGAGGACTCACACAGGGGAAAGGCCATATAAATGTGAACTGTGTGATAAAGGATTTGC  1103

Query 1104  TCAGAAATGTCAGCTAGTCTTCCATAGTCGCATGCATCATGGTGAAGAAAAACCCTATAAATGTGATGTATGCA  1177
            |||||||||.|||||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||.||||
Sbjct 1104  TCAGAAATGCCAGCTGGTCTTCCATAGTCGCATGCATCATGGTGAGGAAAAACCCTATAAATGTGATGTGTGCA  1177

Query 1178  ACTTACAGTTTGCAACTTCTAGCAATCTCAAGATTCATGCAAGGAAGCATAGTGGAGAGAAGCCATATGTCTGT  1251
            |.|||||||||||||||||||||||.||||||||||||||||||||.||.||||||||.|||||||||||.|||
Sbjct 1178  ATTTACAGTTTGCAACTTCTAGCAACCTCAAGATTCATGCAAGGAAACACAGTGGAGAAAAGCCATATGTTTGT  1251

Query 1252  GATAGGTGTGGACAGAGATTTGCTCAAGCCAGCACACTGACCTATCATGTCCGTAGGCATACTGGAGAAAAGCC  1325
            |||||.|||||.|||||||||||.||.||||||||.|||||||||||||||||.||.||.||||||||||||||
Sbjct 1252  GATAGATGTGGGCAGAGATTTGCCCAGGCCAGCACGCTGACCTATCATGTCCGCAGACACACTGGAGAAAAGCC  1325

Query 1326  TTATGTATGTGATACCTGTGGGAAGGCATTTGCTGTCTCTAGTTCTCTTATCACTCATTCTCGAAAACATACAG  1399
            ||||||.||.||.|||||.||.||||||||||||||||||||.||||||||||||||||||||.|||       
Sbjct 1326  TTATGTGTGCGACACCTGCGGAAAGGCATTTGCTGTCTCTAGCTCTCTTATCACTCATTCTCGGAAA-------  1392

Query 1400  GTGAAAAACCATACATATGTGGTATTTGTGGGAAAAGTTTTATTTCCTCAGGAGAGCTCAACAAACACTTTCGG  1473
                                                                                      
Sbjct 1393  --------------------------------------------------------------------------  1392

Query 1474  TCCCATACAGGAGAAAGACCATTTATCTGCGAATTATGTGGAAATTCTTACACAGATATTAAAAATTTAAAGAA  1547
               ||.|||||||||.|||||||||||||.||||||||||||||.||.||||||||.||||||||.||||||||
Sbjct 1393  ---CACACAGGAGAACGACCATTTATCTGTGAATTATGTGGAAACTCATACACAGACATTAAAAACTTAAAGAA  1463

Query 1548  GCACAAAACAAAAGTCCATTCTGGTGCAGATAAAACTCTAGACTCCAGTGCAGAGGATCATACTTTGAGTGAAC  1621
            |||.||||||||.||||||||||||.|.|||||||.||.|||.|.|||||.|||.||.|||.||.|.||.||||
Sbjct 1464  GCATAAAACAAAGGTCCATTCTGGTACTGATAAAAATCCAGATTGCAGTGTAGATGACCATGCTGTAAGCGAAC  1537

Query 1622  AGGATTCCATACAAAAAAGTCCTTTATCAGAAACTATGGATGTGAAGCCTTCTGATATGACTTTACCATTAGCT  1695
            |.||.|||.||||.|.||||||.||.||||||||..|.||||||||||||||||||||||||.||||.|||||.
Sbjct 1538  AAGACTCCGTACAGAGAAGTCCCTTGTCAGAAACACTAGATGTGAAGCCTTCTGATATGACTCTACCCTTAGCG  1611

Query 1696  CTTCCACTTGGGACTGAGGACCATCACATGCTTCTGCCTGTCACGGATACTCAGTCTCCTACATCAGATACATT  1769
            |||||||||||||||||.|||||.||.|||||.||||||||||||||.|.||||||||||.|||||||.||..|
Sbjct 1612  CTTCCACTTGGGACTGAAGACCACCAGATGCTCCTGCCTGTCACGGACAGTCAGTCTCCTGCATCAGACACGCT  1685

Query 1770  GTTGAGGTCAACTGTGAATGGGTATTCAGAACCACAGTTGATTTTTTTACAACAATTATAC  1830
            |.|||||||.||.|||||||||||.||.|||||.||||||||||||||||||||.||.|||
Sbjct 1686  GCTGAGGTCCACGGTGAATGGGTACTCGGAACCGCAGTTGATTTTTTTACAACAGTTGTAC  1746

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