Nucleotide Global Alignment

Description

Query:
TRCN0000474219
Subject:
XM_006522530.2
Aligned Length:
2421
Identities:
1699
Gaps:
468

Alignment

Query    1  ATGGCGGCCGCGGGCTTGGTCGCTGTGGCAGCGGCTGCCGAGTACTCTGGCACGGTAGCGTCGGGAGGTAACCT  74
            ||||||||||||||||||||.|||||||.|||||||||.||||||||||||.|.||.|||||.||.||.|||||
Sbjct    1  ATGGCGGCCGCGGGCTTGGTGGCTGTGGTAGCGGCTGCGGAGTACTCTGGCCCTGTGGCGTCCGGGGGAAACCT  74

Query   75  CCCTGGTGTTCACTGCGGCCCAAGCTCCGGGGCAGGCCCTGGTTTTGGCCCGGGCTCGTGGAGCCGCTCTCTCG  148
            |.|.||||....|||.||.||.|||.|.|||...|||||||||..||||||||||||.|||||||||||..|||
Sbjct   75  CTCCGGTGCGACCTGTGGGCCGAGCCCTGGGTTGGGCCCTGGTCCTGGCCCGGGCTCTTGGAGCCGCTCGGTCG  148

Query  149  ATCGAGCCCTGGAGGAGGCGGCGGTCACTGGGGTGCTGAGCCTGAGCGGCCGGAAACTGAGGGAGTTTCCCCGG  222
            |.|||||||||||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ACCGAGCCCTGGAAGAGGCGGCGGTCACCGGGGTGCTGAGCCTGAGCGGCCGGAAACTGAGGGAGTTTCCCCGG  222

Query  223  GGAGCGGCCAACCACGACCTGACGGACACCACCCGGGCGGACCTGTCGCGAAATCGCCTTTCAGAAATTCCTAT  296
            ||||||||||||||.|||||||||||||||||||||||.||||||||.|||||||||||.||||||||.|||||
Sbjct  223  GGAGCGGCCAACCATGACCTGACGGACACCACCCGGGCCGACCTGTCACGAAATCGCCTCTCAGAAATCCCTAT  296

Query  297  AGAAGCATGTCACTTTGTTTCTCTGGAAAATCTCAACTTGTACCAAAATTGTATTCGTTATATTCCAGAGGCAA  370
            .||||||||||||||||||||.|||||||.|||.|||.|.|||||.|||||||||||.|||||.||||||||..
Sbjct  297  GGAAGCATGTCACTTTGTTTCCCTGGAAAGTCTTAACCTATACCAGAATTGTATTCGGTATATCCCAGAGGCTG  370

Query  371  TTTTAAACCTACAAGCTCTAACATTCTTAAATATTAGTCGGAACCAACTGTCAACATTGCCGGTACACTTGTGT  444
            ||.|||||.||||||||||.||||||.||||||||||||||||.|||||||||||||||||.||.|||||||||
Sbjct  371  TTCTAAACTTACAAGCTCTGACATTCCTAAATATTAGTCGGAATCAACTGTCAACATTGCCAGTCCACTTGTGT  444

Query  445  AATTTGCCATTGAAAGTCTTAATTGCTAGTAATAACAAATTGGTGTCACTTCCAGAAGAAATTGGACACCTTAG  518
            ||.||.|||.|||||||||||||.|||||.||||||||||||||.||.|||||.||||||||||||||.||.||
Sbjct  445  AACTTACCACTGAAAGTCTTAATCGCTAGCAATAACAAATTGGTCTCGCTTCCTGAAGAAATTGGACATCTCAG  518

Query  519  ACATTTGATGGAACTTGATGTGAGCTGCAATGAAATTCAAACTATACCTTCCCAAATTGGTAACCTGGAGGCCT  592
            ||||||||..|||||||||||.|||||||||||||||||||||.|.|||||||||||||||||.|||||.||||
Sbjct  519  ACATTTGACAGAACTTGATGTAAGCTGCAATGAAATTCAAACTGTGCCTTCCCAAATTGGTAATCTGGAAGCCT  592

Query  593  TGAGAGACCTTAATGTAAGAAGAAATCACCTAGTACATTTGCCTGAAGAGCTGGCGGAGTTGCCTTTGATACGG  666
            ||||||||.|.|||||||||||||||||.||..|||..|||||||||||||||||.|||.||||||||||||||
Sbjct  593  TGAGAGACTTCAATGTAAGAAGAAATCATCTTCTACGCTTGCCTGAAGAGCTGGCAGAGGTGCCTTTGATACGG  666

Query  667  TTAGACTTCTCATGCAATAAAATTACCACA---ATCCCTGTTTGTTATCGGAACCTCAGGCACCTACAGACGAT  737
            .|.||||||||.|||||||||||   ||||   ||||||||||||||.|||||||||.|||||||.|||..|||
Sbjct  667  CTCGACTTCTCGTGCAATAAAAT---CACAGTGATCCCTGTTTGTTACCGGAACCTCCGGCACCTCCAGGTGAT  737

Query  738  CACCCTAGATAACAATCCACTACAATCACCTCCTGCACAGATATGTATAAAAGGCAAAGTCCACATATTTAAAT  811
            ||||.|.||.|||||.||.||.||.||.||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct  738  CACCTTGGACAACAACCCGCTTCAGTCGCCTCCTGCACAGATATGTATAAAAGGCAAAATCCACATATTTAAAT  811

Query  812  ACCTGAACATACAAGCTTGTAAGATTGCTCCAGATCTGCCGGATTATGATAGGAGACCGTTGGGTTTTGGCTCC  885
            ||||||||||||||||||||||||||||||||||||||||.||||||||..||||.||.|||||.|||||.|||
Sbjct  812  ACCTGAACATACAAGCTTGTAAGATTGCTCCAGATCTGCCAGATTATGAACGGAGGCCCTTGGGATTTGGATCC  885

Query  886  TGCCATGAAGAACTGTACTCAAGTCGCCCTTATGGAGCCCTTGATTCAGGCTTCAATAGTGTGGACAGTGGTGA  959
            |||||||||||||||||||||.|.||.|||||.||||||||.|||||||||||||||||||||||.||||||||
Sbjct  886  TGCCATGAAGAACTGTACTCAGGCCGTCCTTACGGAGCCCTGGATTCAGGCTTCAATAGTGTGGATAGTGGTGA  959

Query  960  TAAGAGATGGTCAGGGAATGAACCTACAGATGAATTTTCAGATCTGCCTCTTCGAGTAGCAGAGATTACTAAAG  1033
            |||||||||||||||||||||.|||||||||||||||||.|||||||||||||||||.|||||||||||.||||
Sbjct  960  TAAGAGATGGTCAGGGAATGAGCCTACAGATGAATTTTCGGATCTGCCTCTTCGAGTGGCAGAGATTACCAAAG  1033

Query 1034  AACAAAGACTACGAAGAGAAAGCCAGTACCAAGAGAACCGCGGCAGTTTGGTAGTAACAAACGGCGGAGTGGAA  1107
            |.||||||||.||.|||||||||||||||||.|||||.|||.|||||.|||..||.|||||.||.||||||||.
Sbjct 1034  AGCAAAGACTGCGGAGAGAAAGCCAGTACCAGGAGAATCGCAGCAGTGTGGCGGTCACAAATGGTGGAGTGGAG  1107

Query 1108  CATGATCTGGATCAGATTGACTACATAGACAGCTGCACCGCAGAGGAAGAGGAGGCCGAGGTGAGACAGCCCAA  1181
            ||||||||||||||||||||||||||.||||||||.||..||||.|||||.||...|||.||||.|||.|||||
Sbjct 1108  CATGATCTGGATCAGATTGACTACATTGACAGCTGTACTACAGAAGAAGAAGAAAACGACGTGAAACAACCCAA  1181

Query 1182  GGGACCAGACCCAGACAGCCTTAGTTCACAGTTTATGGCGTATATTGAACAGCGGCGAATCTCTCATGAGGGTT  1255
            ..|.|..|||.|..||||.||.||.||||||||||||||.|||||||||||.|||.|||||||.|||||||.||
Sbjct 1182  AAGCCTGGACACGAACAGTCTCAGCTCACAGTTTATGGCATATATTGAACAACGGAGAATCTCACATGAGGTTT  1255

Query 1256  CACCAGTAAAGCCAGTAGCCATTAGGGAGTTTCAAAAAACAGAAGATATGAGAAGATACTTACATCAAAACAGG  1329
            ||||||||||||||.|||||.||||.||||||||||||||||||||.||||.||||||||.|||||||||||||
Sbjct 1256  CACCAGTAAAGCCAATAGCCGTTAGAGAGTTTCAAAAAACAGAAGACATGAAAAGATACTCACATCAAAACAGG  1329

Query 1330  GTTCCAGCTGAGCCATCTTCCCTCCTGTCACTATCAGCAAGTCACAATCAGCTGTCACACACAGACCTGGAACT  1403
            |||||||.|||||||||||...|..|.|||.|..||.||||||||||||||                       
Sbjct 1330  GTTCCAGTTGAGCCATCTTTGGTGTTATCAATGCCACCAAGTCACAATCAG-----------------------  1380

Query 1404  TCATCAGAGAAGGGAGCAGTTAGTAGAGCGCACTCGGAGAGAGGCTCAGCTTGCTGCCCTGCAGTATGAGGAGG  1477
                                                                                      
Sbjct 1381  --------------------------------------------------------------------------  1380

Query 1478  AGAAAATAAGGACCAAGCAGATCCAGAGAGATGCTGTCCTGGACTTTGTCAAACAAAAAGCATCACAAAGTCCA  1551
                                                                 ||.|||||||||||.|..|||
Sbjct 1381  -----------------------------------------------------CAGAAAGCATCACACAACCCA  1401

Query 1552  CAAAAACAGCA-CCCGCTCCTAG--ATGGCGTAGATGGTGAGTGCCCCTTCCCATCCAGAAGGTCTCAGCACAC  1622
            ||.|.|||||| |||   |||.|  |||||         |||||..|||||||||||||||||||.||||||||
Sbjct 1402  CAGAGACAGCAGCCC---CCTGGGAATGGC---------GAGTGTTCCTTCCCATCCAGAAGGTCCCAGCACAC  1463

Query 1623  TGATGATAGTGCCTTGTGCATGTCGCTGTCAGGGTTGAATCAAGTGGGCTGTGCTGCTACCCTGCCTCATTCTT  1696
            ||||||.|||||||||....||||.||||||||||||.||..||||.||||.|..|||||||.|||||||||||
Sbjct 1464  TGATGACAGTGCCTTGCTAGTGTCACTGTCAGGGTTGGATGGAGTGAGCTGCGTGGCTACCCGGCCTCATTCTT  1537

Query 1697  CTGCCTTCACGCCTCTTAAGAGTGATGACAGACCTAATG----CTCTATTAAGTTCACCTGCAACAGAAACAGT  1766
            ||||||||||.|||||.|||||.||..|||||..|.|||    |||    |||.|..|||...|||||.|||||
Sbjct 1538  CTGCCTTCACACCTCTCAAGAGCGAAAACAGAGTTGATGTCACCTC----AAGCTTTCCTATGACAGAGACAGT  1607

Query 1767  TCATCATTCCCCTGCATATTCTTTTCCTGCTGCTATCCAGAGAAATCAGCCTCAGCGCCCTGAAAGCTTCCTTT  1840
            .||||||||||||||.|||||.|||||||||||||.|||||||||||||||.||||||||||||||||||||||
Sbjct 1608  CCATCATTCCCCTGCGTATTCCTTTCCTGCTGCTACCCAGAGAAATCAGCCCCAGCGCCCTGAAAGCTTCCTTT  1681

Query 1841  TCCGAGCAGGTGTCAGGGCAGAAACCAACAAAGGTCATGCTTCACCCCTTCCTCC-ATCTGCTGCACCTACCAC  1913
            |||||||.|.|||||||||||||.|.||.|||||||.|||.||.||.||| |||| .||..||||||||.|.||
Sbjct 1682  TCCGAGCTGCTGTCAGGGCAGAAGCTAATAAAGGTCGTGCATCCCCGCTT-CTCCTGTCATCTGCACCTGCAAC  1754

Query 1914  TGATTCTACAGATTCCATAACAGGACAGAATTCAAGACAGAGAGAAGAAGAGCTGGAATTAATAGACCAACTGC  1987
            ||||.||||||||.|.||||            |||||||||||||||||||||||.||||||||||.||.||.|
Sbjct 1755  TGATCCTACAGATGCTATAA------------CAAGACAGAGAGAAGAAGAGCTGAAATTAATAGATCAGCTAC  1816

Query 1988  GTAAACATATTGAGTACCGGTTGAAAGTGTCTCTACCTTGTGATCTCGGAGCAGCTCTAACTGACGGTGTTGTT  2061
            |.|||||.||||||||||||||||||||.|||.|.||.|||||.||.||||||||||||||||||||||||||.
Sbjct 1817  GAAAACACATTGAGTACCGGTTGAAAGTCTCTTTGCCCTGTGACCTTGGAGCAGCTCTAACTGACGGTGTTGTA  1890

Query 2062  CTTTGCCATTTGGCCAATCATGTGCGACCTCGATCTGTCCCAAGCATTCATGTTCCCTCACCAGCTGTAG--TA  2133
            ||||||||.||||||||||||||.||.||||||||||||||||||||||||||.||.||.|||||.|| |  ||
Sbjct 1891  CTTTGCCACTTGGCCAATCATGTTCGGCCTCGATCTGTCCCAAGCATTCATGTCCCATCCCCAGCCGT-GCCTA  1963

Query 2134  AGT-----------------------------------------------------------------------  2136
            |.|                                                                       
Sbjct 1964  AATTAACGATGGCAAAGTGCAGGCGGAATGTGGAGAACTTCCTGGATGCTTGCAGAAAAATCGGTGTACCCCAG  2037

Query 2137  --------------------------------------------------------------------------  2136
                                                                                      
Sbjct 2038  GACAATCTCTGTTCTCCTTCCGACATCCTTCAGCTAAACCTCAGCCTTAAGAGAACTGTTGAAACGCTGCTCTC  2111

Query 2137  --------------------------------------------------------------------------  2136
                                                                                      
Sbjct 2112  TCTTGGGGCACGTGCGGAAGAATCCAGCTTTGTCTCTCTGTCTGTCCAGCTTCTGGGTTTTGTGGCATTTTACT  2185

Query 2137  -----------------------------------------------------  2136
                                                                 
Sbjct 2186  GTTCTTTAATGTTAATTCTCTGTGTGCTTTATTACCGGGTCTTCACCTACAGC  2238

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