Nucleotide Global Alignment

Description

Query:
TRCN0000474479
Subject:
XM_006502822.3
Aligned Length:
1417
Identities:
1098
Gaps:
169

Alignment

Query    1  ATGGTATCTTCTCAAAAGTTGGAA-AAACCTATAGAGATGGGCAGTAGCGAACCCCTTCCCATCGCAGATGGTG  73
            |||         ||       ||| |.|||   ||||||||||||.||.||.|||||||||||||..|||..||
Sbjct    1  ATG---------CA-------GAACAGACC---AGAGATGGGCAGCAGTGAGCCCCTTCCCATCGTGGATTCTG  55

Query   74  ACAGGAGGAGGAAGAAGAAGCGGAGGGGCCGGGCCACTGACTCCTTGCCAGGAAAGTTTGAAGATATGTACAAG  147
            |||.||||||||||||||||||.|.|..|||||||||.|||||..||||||||||||||||||||.|||||.||
Sbjct   56  ACAAGAGGAGGAAGAAGAAGCGTAAGACCCGGGCCACCGACTCTCTGCCAGGAAAGTTTGAAGATGTGTACCAG  129

Query  148  CTGACCTCTGAATTGCTTGGAGAGGGAGCCTATGCCAAAGTTCAAGGTGCCGTGAGCCTACAGAATGGCAAAGA  221
            ||||||||.||||||||.|||||.|||||||||||||||||.||.|||||.||||.||||||||.|||.||.||
Sbjct  130  CTGACCTCGGAATTGCTGGGAGAAGGAGCCTATGCCAAAGTCCAGGGTGCTGTGAACCTACAGAGTGGGAAGGA  203

Query  222  GTATGCCGTCAAAATCATCGAGAAACAAGCAGGGCACAGTCGGAGTAGGGTGTTTCGAGAGGTGGAGACGCTGT  295
            ||||||.|||||||||||||||||.|||||.|||||||||||.|||.|.|||||.||.|||||||||||.||||
Sbjct  204  GTATGCTGTCAAAATCATCGAGAAGCAAGCCGGGCACAGTCGAAGTCGAGTGTTCCGTGAGGTGGAGACACTGT  277

Query  296  ATCAGTGTCAGGGAAACAAGAACATTTTGGAGCTGATTGAGTTCTTTGAAGATGACACAAGGTTTTACTTGGTC  369
            ||||||||||.||.||||.|||||||||||||||||||||.||||||||||||||||||.||||||||||||||
Sbjct  278  ATCAGTGTCAAGGGAACAGGAACATTTTGGAGCTGATTGAATTCTTTGAAGATGACACACGGTTTTACTTGGTC  351

Query  370  TTTGAGAAATTGCAAGGAGGTTCCATCTTAGCCCACATCCAGAAGCAAAAGCACTTCAATGAGCGAGAAGCCAG  443
            ||||||||||||||||||||.||||||.||||.|||||||||||||..||||||||||||||||||||||||||
Sbjct  352  TTTGAGAAATTGCAAGGAGGCTCCATCCTAGCACACATCCAGAAGCGGAAGCACTTCAATGAGCGAGAAGCCAG  425

Query  444  CCGAGTGGTGCGGGACGTTGCTGCTGCCCTTGACTTCCTGCATACCAAAGACAAAGTCTCTCTCTGTCACCTAG  517
            ..||||||||||||||||.||..|||||||||||||||||||.||.||||.||                     
Sbjct  426  TAGAGTGGTGCGGGACGTCGCCACTGCCCTTGACTTCCTGCACACTAAAGGCA---------------------  478

Query  518  GCTGGAGTGCTATGGCGCCATCAGGGCTCACTGCAGCCCCAACCTCCCTGGGCTCCAGTGATCCTCCCACCTCA  591
                                                                                      
Sbjct  479  --------------------------------------------------------------------------  478

Query  592  GCCTCCCAAGTAGCTGGGACTACANGCATTTGCTCATNGTGATNTGAAACCAAGNAAAATATATTGTGTGAATC  665
                                         |||||||..|||||.||||.|||  .||||.|||.||||||||||
Sbjct  479  -----------------------------TTGCTCACCGTGATCTGAAGCCA--GAAAACATACTGTGTGAATC  521

Query  666  TCCAGGAAAAGGTGTCTCCAGTGAAAAATCTGTGACTTTGACTTGGGCAGTGGGATGAAACTGAACAACTCCTT  739
            |||| ||||||||||||||.||| |||||.||||||||||||||||||||||||.|.||..||||||||||| |
Sbjct  522  TCCA-GAAAAGGTGTCTCCGGTG-AAAATTTGTGACTTTGACTTGGGCAGTGGGGTAAAGTTGAACAACTCC-T  592

Query  740  GTACCCCCATAACCACACCAGAGCTGACCACCCCATGTGGCTCTGCAGAATACATGGCCCCTGAAGGTAGTNGA  813
            |.||.|||||||||||.|||||||||||.||.|||||.|||||||||||.||.|||||.|||| ||||.||.||
Sbjct  593  GCACTCCCATAACCACGCCAGAGCTGACTACTCCATGCGGCTCTGCAGAGTATATGGCACCTG-AGGTGGTGGA  665

Query  814  GGTCTTCACGGACCAGGCCACATTCTACGACAAGCGCTGTGACCTGTGGAGCCTGGGCGTGGTCCTCTACATCA  887
            ||||||.|.||||.||||.||.|||||.|||||||||||||||||||||||||||||.||||||||||||||||
Sbjct  666  GGTCTTTAGGGACGAGGCTACTTTCTATGACAAGCGCTGTGACCTGTGGAGCCTGGGTGTGGTCCTCTACATCA  739

Query  888  TGCTGAGTGGCTACCCACCCTTCGTGGGTCACTGCGGGGCCGACTGTGGCTGGGACCGGGGCGAGGTCTGCAGG  961
            ||||||||||||||||.|||||.||.||||||||.|||||.||||||||||||||||||||.|||||.||||||
Sbjct  740  TGCTGAGTGGCTACCCCCCCTTTGTAGGTCACTGTGGGGCTGACTGTGGCTGGGACCGGGGAGAGGTATGCAGG  813

Query  962  GTGTGCCAGAACAAGCTGTTTGAAAGCATCCAGGAAGGCAAGTATGAGTTTCCTGACAAGGACTGGGCACACAT  1035
            .||||||||||||||||||||||.|||||||||||||||||.||.||||||||||||||.||||||||.|||||
Sbjct  814  ATGTGCCAGAACAAGCTGTTTGAGAGCATCCAGGAAGGCAAATACGAGTTTCCTGACAAAGACTGGGCTCACAT  887

Query 1036  CTCCAGTGAAGCCAAAGACCTCATCTCCAAGCTCCTGGTGCGAGATGCAAAGCAGAGACTTAGCGCCGCCCAAG  1109
            |||||..||.|||||||||||||||||.|||||||||||.||||||||.|||||.|||||.||.||.|||||.|
Sbjct  888  CTCCAACGAGGCCAAAGACCTCATCTCTAAGCTCCTGGTTCGAGATGCGAAGCAAAGACTCAGTGCTGCCCAGG  961

Query 1110  TTCTGCAGCACCCATGGGTGCAGGGGCAAGCTCCAGAAAAGGGACTCCCCACGCCGCAAGTCCTCCAGAGGAAC  1183
            ||||||||||.||||||||.||.||||||||||||||||.||||||||||||||||||||||||.|||||.|||
Sbjct  962  TTCTGCAGCATCCATGGGTACAAGGGCAAGCTCCAGAAAGGGGACTCCCCACGCCGCAAGTCCTTCAGAGAAAC  1035

Query 1184  AGCAGCACAATGGACCTGACGCTCTTCGCAGCTGAGGCCATCGCCCTTAACCGCCAGCTATCTCAGCACGAAGA  1257
            ||||||||.||||||.||||.||||||||||||||||||||.|||||.|||||||||||.||||||||.||.||
Sbjct 1036  AGCAGCACCATGGACTTGACTCTCTTCGCAGCTGAGGCCATTGCCCTGAACCGCCAGCTGTCTCAGCATGAGGA  1109

Query 1258  GAACGAACTAGCAGAGGAGCCAGAGGCACTAGCTGATGGCCTCTGCTCCATGAAGCTTTCCCCTCCCTGCAAGT  1331
            |||.|||||.||.|||||.|..|||||.||||||||.||||||||||||||||||||.||||||||.|.|||.|
Sbjct 1110  GAATGAACTGGCCGAGGAACAGGAGGCCCTAGCTGAGGGCCTCTGCTCCATGAAGCTGTCCCCTCCATCCAAAT  1183

Query 1332  CACGCCTGGCCCGGAGACGGGCCCTGGCCCAGGCAGGCCGTGGTGAAGAC-AGGAGCCCGCCCA----------  1394
            |.||||||||.||.||.||.||||||||||||||.||||     ||||.| ||..||...||||          
Sbjct 1184  CTCGCCTGGCTCGAAGGCGAGCCCTGGCCCAGGCTGGCC-----GAAGCCGAGATGCAAACCCATGTTTGACAC  1252

Query 1395  ---CAGCACTC  1402
               |||..|||
Sbjct 1253  CGGCAGGGCTC  1263

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