Nucleotide Global Alignment

Description

Query:
TRCN0000475263
Subject:
XM_017316156.1
Aligned Length:
5056
Identities:
784
Gaps:
4184

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAGGAGATTGGCTTTTCGAGGCGCTGGTTGTGCTCTGAAGAAGTTGGATTCCATGGGTTCCAAGAGAAGAAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCCACCTCTCCTTCCAGCAGTGTCAGTGGAGACTTTGATGACGGGCACCATTCTGTGCCTACACCAGGCCCAA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCAGGAAAAGGAGAAGACTGTCCAATCTTCCAACTGTAGATCCTATTGCTGTGTGCCATGAACTCTATAACACC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ATCCGAGACTATAAGGATGAACAGGGCAGACTCCTCTGTGAGCTGTTCATTAGGGCTCCAAAGCGGAGAAATCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACCAGACTATTATGAAGTGGTTTCTCAGCCCATTGACTTGATGAAAATCCAACAGAAACTTAAAATGGAAGAGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATGATGATGTTAATCTACTGACTGCTGACTTCCAGCTGCTTTTTAACAATGCAAAGGCCTACTATAAGCCAGAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TCCCCTGAGTATAAAGCTGCTTGTAAACTCTGGGATTTGTACCTTCGAACAAGAAATGAGTTTGTTCAGAAAGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGAAGCAGACGATGAAGATGATGACGAAGATGGGCAAGACAATCAAGGCACACTGGCTGACGGCTCTTCTCCAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GTTATCTGAAGGAGATCCTGGAGCAGCTTCTTGAAGCCATAGTTGTAGCCACAAATCCATCAGGACGGCTCATC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AGTGAACTTTTTCAGAAACTGCCTTCCAAAGTGCAATATCCAGACTATTATGCAATAATTAAGGAACCTATAGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TCTCAAGACCATTGCTCAGAGGATACAGAATGGAAGCTACAAAAGTATACACGCAATGGCCAAAGATATAGATC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTCTAGCAAAAAATGCCAAAACATACAATGAGCCTGGGTCTCAAGTATTCAAGGATGCCAATTCGATTAAAAAA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ATATTTTATATGAAAAAGGCAGAAATTGAACATCATGAAATGACTAAATCAAGTCTTCGAATAAGGACTGCATC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AAATTTGGCTGCAGCCAGGCTGACAGGTCCTTCGCACAATAAAAGCAGCCTTGGTGAAGAAAGAAACCCCACTA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCAAGTATTACCGTAATAAAAGAGCAGTCCAAGGGGGTCGCTTGTCAGCAATTACCATGGCACTTCAGTATGGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TCAGAGAGTGAAGAGGACGCTGCTTTAGCTGCTGCACGCTATGAAGAAGGGGAATCTGAAGCAGAGAGCATCAC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TTCCTTCATGGACGTTTCCAACCCCTTTCATCAGCTTTACGACACAGTTAGGAGCTGTAGGAATCACCAAGGGC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGCTCATAGCTGAACCTTTCTTCCATTTGCCTTCAAAGAAAAAATACCCAGATTATTATCAGCAAATTAAAATG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CCCATATCACTTCAACAGATCAGAACAAAGCTAAAGAACCAAGAATATGAAACTTTAGATCATTTGGAGTGTGA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TCTGAATTTAATGTTTGAAAATGCCAAACGTTATAACGTTCCCAATTCAGCCATCTATAAGCGAGTTCTAAAAC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TGCAGCAAGTCATGCAGGCAAAGAAGAAGGAGCTTGCGAGGAGAGATGACATTGAGGACGGAGACAGCATGATC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TCCTCAGCCACTTCTGACACTGGTAGTGCCAAAAGGAAAAGGAATACTCATGACAGTGAGATGTTGGGTCTCAG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GAGGCTATCCAGTAAAAAGAACATAAGAAAACAGCGAATGAAAATTTTATTCAATGTTGTTCTTGAAGCTCGAG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AGCCAGGTTCAGGCAGAAGACTTTGCGATCTATTTATGGTTAAGCCATCCAAGAAGGACTATCCTGATTATTAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AAAATCATCTTAGAGCCAATGGACCTGAAAATAATTGAGCATAACATCCGAAATGACAAATATGCAGGTGAAGA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AGGAATGATGGAAGACATGAAACTCATGTTCCGCAATGCCAGGCACTACAATGAGGAGGGCTCCCAGGTATACA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  ATGATGCCCATATCCTGGAGAAGTTACTCAAAGATAAAAGGAAAGAGCTGGGCCCTCTGCCTGATGATGATGAC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ATGGCTTCTCCCAAACTTAAATTGAGTAGGAAGAGTGGTGTTTCTCCTAAGAAATCAAAGTACATGACTCCAAT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GCAGCAGAAACTGAATGAAGTGTATGAAGCTGTAAAGAACTATACTGATAAGAGGGGTCGCCGCCTTAGTGCTA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TATTTCTAAGACTCCCCTCTAGATCAGAGCTGCCTGACTACTACCTGACCATTAAAAAGCCCATGGACATGGAA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  AAAATTCGAAGTCACATGATGGCAAACAAGTACCAAGACATAGATTCTATGGTAGAGGACTTTGTCATGATGTT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TAATAATGCCTGTACCTACAATGAACCAGAGTCTTTGATCTACAAAGATGCCCTTGTACTGCATAAAGTCCTCC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TTGAGACTCGGAGAGACCTGGAGGGAGATGAGGATTCTCATGTCCCTAATGTGACGTTGCTGATTCAAGAGCTC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  ATCCATAACCTTTTTGTGTCAGTCATGAGTCATCAGGATGACGAAGGGAGGTGTTACAGCGACTCCTTAGCAGA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AATTCCTGCTGTGGATCCCAACTCTCCCAATAAACCTCCCCTTACATTTGACATTATCAGGAAAAATGTTGAAA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GTAATCGGTATCGGCGACTTGATTTATTTCAGGAGCATATGTTTGAAGTATTGGAACGGGCAAGAAGGATGAAC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CGGACAGATTCCGAAATATATGAGGATGCTGTAGAACTTCAGCAGTTTTTTATTAGAATTCGTGATGAACTCTG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CAAAAATGGAGAGATCCTTCTTTCTCCAGCACTCAGCTATACCACAAAACACTTGCATAACGATGTGGAAAAAG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AAAAAAAGGAAAAATTGCCTAAAGAAATAGAGGAAGATAAACTAAAACGCGAAGAAGAAAAAAGAGAAGCTGAA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AAAAGTGAAGATTCCTCAGGTACTACAGGCCTCTCAGGCTTACATCGTACATACAGCCAGGACTGCAGCTTTAA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  GAACAGCATGTATCATGTCGGAGATTATGTCTATGTTGAACCTGCGGAGGCCAATCTACAACCACATATAGTGT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  GTATTGAGAGACTGTGGGAGGATTCAGCTGGTGAAAAATGGTTGTACGGCTGTTGGTTTTATCGGCCAAATGAA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  ACATTCCATTTGGCTACACGAAAATTTCTAGAAAAAGAAGTTTTTAAGAGTGACTACTACAATAAAGTACCTGT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TAGTAAAATTCTAGGCAAATGTGTAGTCATGTTTGTCAAGGAATACTTTAAATTATGTCCAGAAAACTTTCGCG  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  ATGAGGATGTTTTTGTCTGTGAATCGAGGTATTCTGCCAAAACCAAATCTTTTAAGAAAATTAAACTGTGGACC  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  ATGCCCATCAGTTCAGTTAGATTTGTCCCTCGGGATGTGCCTTTGCCTGTGGTCCGAGTGGCCTCTGTGTTTGC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  AAATGCAGATAAAGGGGATGATGAGAAGAATACAGACAACTCAGATGACAATAGAGCTGAAGACAATTTTAACT  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  TGGAAAAGGAAAAAGAAGATGTTCCTGTGGAGATGTCCAATGGTGAGCCAGGTTGCCACTACTTTGAGCAGCTT  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  CGGTACAATGACATGTGGCTGAAGGTTGGTGATTGTGTCTTCATCAAATCCCACGGCTTGGTGCGCCCTCGTGT  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  GGGCAGAATTGAGAAAGTATGGGTCCGAGATGGAGCTGCATATTTTTATGGCCCTATCTTCATTCATCCAGAAG  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  AAACAGAACATGAGCCCACAAAAATGTTCTACAAAAAAGAAGTGTTTCTGAGTAATCTGGAAGAGACCTGCCCT  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  ATGAGTTGTATTCTGGGGAAATGTGCAGTGCTGTCATTCAAGGACTTCCTCTCCTGCAGGCCAACTGAAATACC  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  AGAAAATGACATTCTGCTTTGTGAGAGCCGCTATAATGAGAGTGACAAGCAGATGAAGAAGTTCAAGGGTTTGA  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  AGAGGTTTTCACTCTCTGCTAAAGTTGTAGATGATGAAATCTACTACTTCAGAAAACCAATCATTCCTCAGAAG  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  GAACCCTCACCTTTGTTAGAAAAGAAGATACAATTGCTAGAAGCTAAATTTGCAGAGTTAGAAGGAGGAGATGA  4070

Query    1  -------------ATGGGAGAAGAAGATAGTGAGGTCATTGAACCTCCTTCTCTACCTCAGCTTCAGACCCCCC  61
                         |||||||||||.||||||||.|||||||||.||||.|||||||||||.||.|||||.||||
Sbjct 4071  TGATATTGAGGAGATGGGAGAAGAGGATAGTGAAGTCATTGAAGCTCCATCTCTACCTCAACTGCAGACACCCC  4144

Query   62  TGGCCAGTGAGCTGGACCTCATGCCCTACACACCCCCACAGTCTACCCCAAAGTCTGCCAAAGGCAGTGCAAAG  135
            ||||||.||||.||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4145  TGGCCAATGAGTTGGACCTCATGCCCTATACACCCCCACAGTCTACCCCAAAGTCTGCCAAAGGCAGTGCAAAG  4218

Query  136  AAGGAAGGCTCCAAACGGAAAATCAACATGAGTGGCTACATCCTGTTCAGCAGTGAGATGAGGGCTGTGATTAA  209
            ||||||.|.||.|||||.|||||||||||||||||||||||..|||||||||||||.|||||.|||||||||||
Sbjct 4219  AAGGAAAGTTCTAAACGAAAAATCAACATGAGTGGCTACATTTTGTTCAGCAGTGAAATGAGAGCTGTGATTAA  4292

Query  210  GGCCCAACACCCAGACTACTCTTTCGGGGAGCTCAGCCGCCTGGTGGGGACAGAATGGAGAAATCTTGAGACAG  283
            .|||||.|||||||||||||||||.||||||||||||.|.|||||||||||||||||||||||.|||||.||||
Sbjct 4293  AGCCCAGCACCCAGACTACTCTTTTGGGGAGCTCAGCAGACTGGTGGGGACAGAATGGAGAAACCTTGAAACAG  4366

Query  284  CCAAGAAAGCAGAATATGAAG-GCATGATGGGTGGCTATCCGCCAGGCCTTCCACCTTTGCAGGGC-CCAGTTG  355
            ||||||||||||||||||||| ||     |||..||||     .||           ||||.|.|| .|||..|
Sbjct 4367  CCAAGAAAGCAGAATATGAAGAGC-----GGGCAGCTA-----AAG-----------TTGCTGAGCAGCAGGAG  4419

Query  356  ATGGCCTTGTTAGCATGGGCAGCA-------TGCAGCC----ACTTCACCC----------------TGGGGG-  401
            |       |..|||  |.||||||       .||||||    .||||.|||                |||||| 
Sbjct 4420  A-------GAGAGC--GAGCAGCACAGCAACAGCAGCCGAGTGCTTCTCCCCGAGCAGGCACCCCTGTGGGGGC  4484

Query  402  ---------------GCCTCCACC-CCACC-------ATCTTCCGCCAGGTGTGCCTGGCCTCCCGG--GCATC  450
                           |||.||||| .||||       ||..||...|||..||   ||.|  .||.|  |||  
Sbjct 4485  TCTCATGGGGGTGGTGCCACCACCAACACCAATGGGGATGCTCAATCAGCAGT---TGAC--ACCTGTTGCA--  4551

Query  451  CCACCACCGGGTGTGATGAACCAAGGAGTGGCCCCTATGGTAGGGACTCCAGCACCAGGTGGAAGTCCATATGG  524
                     |||||||||||.||||||||.|||||.||||||||||||||||||||||||||||||||.|||||
Sbjct 4552  ---------GGTGTGATGAATCAAGGAGTAGCCCCCATGGTAGGGACTCCAGCACCAGGTGGAAGTCCGTATGG  4616

Query  525  ACAACAGGTGGGAGTTTTGGGGCCTCCAGGGCAGCAGGCACCACCTCCATATCCCGGCCCACATCCAGCTGGAC  598
            |||||||||.|||||||||||.||||||||||||||||||||||||||||||||.||.||.|||||||||||.|
Sbjct 4617  ACAACAGGTAGGAGTTTTGGGACCTCCAGGGCAGCAGGCACCACCTCCATATCCTGGTCCTCATCCAGCTGGCC  4690

Query  599  CCCCTGTCATACAGCAGCCAACAACACCCATGTTTGTAGCTCCCCCACCAAAGACCCAGCGGCTTCTTCACTCA  672
            |||||||||||||||||||||||||.|||||||||||.||||||||||||||||||||..|||||||.||||||
Sbjct 4691  CCCCTGTCATACAGCAGCCAACAACGCCCATGTTTGTGGCTCCCCCACCAAAGACCCAAAGGCTTCTCCACTCA  4764

Query  673  GAGGCCTACCTGAAATACATTGAAGGACTCAGTGCGGAGTCCAACAGCATTAGCAAGTGGGATCAGACACTGGC  746
            |||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||.||.||..||||
Sbjct 4765  GAGGCCTACCTGAAATACATTGAAGGACTCAGTGCTGAATCCAACAGCATTAGCAAGTGGGACCAAACTTTGGC  4838

Query  747  AGCTCGAAGACGCGACGTCCATTTGTCGAAAGAACAGGAGAGCCGCCTACCCTCTCACTGGCTGAAAAGCAAAG  820
            ||||||||||||.||.|||||||||||.|||||||||||||||||||||||.|||||||||||.|||||.||||
Sbjct 4839  AGCTCGAAGACGGGATGTCCATTTGTCCAAAGAACAGGAGAGCCGCCTACCTTCTCACTGGCTCAAAAGTAAAG  4912

Query  821  GGGCCCACACCACCATGGCAGATGCCCTCTGGCGCCTTCGAGATTTGATGCTCCGGGACACCCTCAACATTCGC  894
            ||||.||||||||||||||||||||||||||||||||.||.|||||.|||||.||.|||||.||||||||.||.
Sbjct 4913  GGGCACACACCACCATGGCAGATGCCCTCTGGCGCCTACGGGATTTAATGCTTCGAGACACTCTCAACATCCGA  4986

Query  895  CAAGCATACAACCTAGAAAATGTT  918
            ||.|||||||||||||||||||||
Sbjct 4987  CAGGCATACAACCTAGAAAATGTT  5010

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.