Nucleotide Global Alignment

Description

Query:
TRCN0000475531
Subject:
NR_102301.2
Aligned Length:
4681
Identities:
1340
Gaps:
3175

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGACCAGGAAGTGGATCCCGTGGAATGACGGTCACGCCGCGGCGGGCGGATTGACTTCTAAAGACTGTTGGTAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGAGAAAGAAACCCAGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTCAGTCCCTCTCATCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGCTTAGGTTCCGTCTCTCGTGACCCAGTGTCATGAACTTGGGAAGAGGCTGCACTGGGCAGGTCCTGGGAAGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCTCACACCCCGACATGGATGGACACGGGGTGAGGGTCCTGTGGTGTCAGTGCTCTTGGGCAGCAGGGATTGTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAGGGGCCACATCTGGATGCACTGTCAGCTCACTGTGGACCAGGATTGGAGCAGCTGCCAATGGGAGTCACGTA  370

Query    1  -----ATGGCTCTTTCTCA----------GGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGA  59
                 |||         ||          |||||||.|||||||||||||.|||||||||||||||||||||||
Sbjct  371  TTAATATG---------CACGAAGTACGTGGGTCTATTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGA  435

Query   60  GGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGG  133
            ||||||||||||||||||||||||||||||||||.|||||||.|||||||||||||||||||||||||||||.|
Sbjct  436  GGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTTTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTCG  509

Query  134  TCTCCCTGGATATCTCTTCCAAATGCATGATGAATACATTGTCATCAACAGGGCAAGGCAATACAGAAGTGATC  207
            |||||||||||||||||||||||||||||.||||.||.|||||.||||||||||||||||||||||||||||||
Sbjct  510  TCTCCCTGGATATCTCTTCCAAATGCATGTTGAAGACGTTGTCGTCAACAGGGCAAGGCAATACAGAAGTGATC  583

Query  208  CACACAGGGACATTGCAGAGACAAGCAAGTTATCACATTGGAGCATTTTGCTCCCAGGAAATTGAGAAAGACAT  281
            |||||||||||||||||.||||||||||||.||||||||||||.||||||.|.|||.|||||||||||||||||
Sbjct  584  CACACAGGGACATTGCACAGACAAGCAAGTCATCACATTGGAGAATTTTGTTTCCATGAAATTGAGAAAGACAT  657

Query  282  TCATGACTTTGTGTTTCAGTGGCAAGAAGATGAAACAAATGACCATGAAGCACCCATGACAGAAATAAAAAAGT  355
            |||||.|||.|.||||||||||.||||||||||||||||||.|||||.||||||||||||||||||.|||.|||
Sbjct  658  TCATGGCTTCGAGTTTCAGTGGAAAGAAGATGAAACAAATGGCCATGCAGCACCCATGACAGAAATCAAAGAGT  731

Query  356  TGACTAGTAGTACAGACCGATATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAGGTCAGCTTGAATCAAGA  429
            ||.||.|||||||||.||.|.|||||||||||||||||||||||||||.||||||||.||||||||.||||||.
Sbjct  732  TGGCTGGTAGTACAGGCCAACATGATCAAAGGCATGCTGGAAACAAGCGTATTAAAGATCAGCTTGGATCAAGC  805

Query  430  TTTCATTTGCATTTGC-----------------------GAAG-------------------------------  449
            ||||||||||||.|||                       ||||                               
Sbjct  806  TTTCATTTGCATCTGCCTGAACCGCACATATTTCAGTCTGAAGGGAAAATTGGTAATCAAGTTGAGAAGTCTAT  879

Query  450  --------------------------------------------------------------------------  449
                                                                                      
Sbjct  880  CAACAATGCTTCCTCAGTTTCAACATCCCAAAGAATTTGTTGTAGGCCCAAAACCCATATTTCTAATAAGTATG  953

Query  450  ------------------------------------------------ACATAGGAGAA---------------  460
                                                            ||||..|||||               
Sbjct  954  GAAATAATTCCCTCCATTCTTCATTACTCACACAAAAATGGGAAGTACACATGAGAGAAAAATCTTTTGAATGT  1027

Query  461  --------------------------------------------------------------------------  460
                                                                                      
Sbjct 1028  ATACAGAGCTTCAAATCCTTTAATTGCAGCTCACTCTTAAAAAAACATCAGATAATTCACTTAGAAGAGAAACA  1101

Query  461  --------------------------------------------------------------------------  460
                                                                                      
Sbjct 1102  ATGTAAATGTGATGTATGTGGCAAGGTCTTTAATCAGAAGCGATACCTTGCCTGCCATCGTAGATGTCACACTG  1175

Query  461  --------------------------------------------------------------------------  460
                                                                                      
Sbjct 1176  GTGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTTGGTCATAATTCATCCCTCTTCATTCACAAAGCG  1249

Query  461  -TTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGAGAAAGTTTTCAGTTGCAAATCACATCTTGAAAT  533
             ||||||||||||||||||||||..||||||||||||||||.||||||||||||.||||||||||.|||||||.
Sbjct 1250  CTTCATACTGGAGAGAAACCTTATGAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAG  1323

Query  534  ACATAGGATAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGCGACAAGGCTTTTAAGC--ATGATTC  605
            |||||.||..||||||||||||||||||||||||||||||||||||||.||..|||||||  .||  ||.||||
Sbjct 1324  ACATAAGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGATGAGGCTTT--CGCATATAATTC  1395

Query  606  ACACCTGGCAAAACATACTAGAATTCACAGGGGAGACAAACATTACACATGTAATGAATGTGGCAAGGTTTTTG  679
            |.|.||||||||||||||||.|.||||||..|||||.||||.||||||||||||||||||||||||.||||||.
Sbjct 1396  ATATCTGGCAAAACATACTATACTTCACACTGGAGAGAAACCTTACACATGTAATGAATGTGGCAAAGTTTTTA  1469

Query  680  ATCAAAAAGCAACCCTTGCATGTCATCATAGA-----------AG-----------------------------  713
            |||.|..|.|||||||||||.|.|||||||||           ||                             
Sbjct 1470  ATCGACTATCAACCCTTGCACGCCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAGTGTGAC  1543

Query  714  --------------------------------------------------------------------------  713
                                                                                      
Sbjct 1544  AAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGGATTCATAGTGGAGAGAAACCTTACAAATGTGA  1617

Query  714  --------------------------------------------------------------------------  713
                                                                                      
Sbjct 1618  AGAATGTTGCAAAGTTTTCAGTCGCAAATCAAACCTGGAAAGACACAGGAGGATTCATACTGGAGAGAAACCAT  1691

Query  714  ----------------------------------------------------------------TCATACTGGA  723
                                                                            ||||||||||
Sbjct 1692  ACAAATGTAAGGTTTGTGACAAGGCTTTCCAGAGGGATTCACACCTGGCACAACATCAGAGAGTTCATACTGGA  1765

Query  724  GAGAAACCTTATAAGTGTAATGAGTGTGGCAAGACCTTTAGTCAGACATCA------------CA---------  776
            |||||||||||.||||||||||||||||||||||||||..|||||||||||            ||         
Sbjct 1766  GAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCGGTCAGACATCATCGCTTATAATCCATCGTAGGCT  1839

Query  777  ---------------------------------------------------------------CCTTGTGTACC  787
                                                                           ||||||.||||
Sbjct 1840  TCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTCATCCCTTGTATACC  1913

Query  788  ATCATAGACTGCATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAGACCTTCGCTCGAAATTCAGTC  861
            |||||||.||.||||.|||||||||.|||||..|.||||||||||||||||||||||||..||..||||||..|
Sbjct 1914  ATCATAGGCTTCATAGTGGAGAGAAGCCTTAATAGTGTAATGAGTGTGGCAAGACCTTCCATCACAATTCAACC  1987

Query  862  CTCGTAATTCATAAGGCAGTTCATACTGCAGAGAAACCCTATAAGTGTAATGAATGTGGCAAGGTTTTTAAGCA  935
            || ||||.||||||||||.|||||||||.|||||||||.||.|||..||||||||||||||||||||||||.||
Sbjct 1988  CT-GTAAGTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGCATAATGAATGTGGCAAGGTTTTTAATCA  2060

Query  936  ACGAGCAACTCTTGCAGGACATCGTAGAGTTCACACTGGAGAGAAACCTTACAGATGTGAAGAATGCGAC-AAA  1008
            |..||||||..|||||...||.|.||||.||||.|||||||||||||||||||.|||.||.|||||.||| |||
Sbjct 2061  AAAAGCAACCTTTGCACATCACCATAGACTTCATACTGGAGAGAAACCTTACAAATGGGAGGAATGTGACAAAA  2134

Query 1009  GTTTTCAGTCGCAAATCACATCTTGAAAGACATAGGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGT  1082
            |||||||||.|.||||||.|.|||.|||.|||||.||..|||||.|.||.||||||||||||||.|.|||||||
Sbjct 2135  GTTTTCAGTTGTAAATCAAACCTTAAAACACATAAGAAAATTCACATTGAAGAGAAACCATACAGAGGTAAGGT  2208

Query 1083  TTGTGACAAGGCTTTCCGGAGTG------ATTCACGTCTTGCAGAACA---------TCA-----GAGAG----  1132
            |||||||||||.|||      ||      ||.||..|||.|||.||||         |||     |||||    
Sbjct 2209  TTGTGACAAGGTTTT------TGCATATAATGCATATCTGGCAAAACATACTAGAATTCACACTGGAGAGAAAC  2276

Query 1133  --------------------------------------------------------------------------  1132
                                                                                      
Sbjct 2277  TCATTATAAGTGTAATGAGTGTGGCAAGACCGTTGGTCAAAATTCACACCTTGTAATTAAAAGGTCAAAATTCA  2350

Query 1133  ----------TTCATACTGGAGAGAGACCTTACA--CATGTAATGAATGTGGCAAGGTTTTTAGTACAA-AAGC  1193
                      ||||||.||||||||.||||||||  ||  .||||||||||.||.||||||||.| ||| ||.|
Sbjct 2351  CACCTTGTAATTCATAGTGGAGAGAAACCTTACAAGCA--CAATGAATGTGACATGGTTTTTAAT-CAACAATC  2421

Query 1194  GTACCTCGCATGTCATCAAAAACTTCATACTGGAGAGAAACTTTACGAATGTGAAGAATGTGACAAAGTTTACA  1267
            ..||||.|||.|||||||.|.|||||||||||.|.|||||..||||.||.|||||.|||||||||||||||.||
Sbjct 2422  ACACCTTGCAAGTCATCATAGACTTCATACTGCATAGAAATCTTACAAACGTGAACAATGTGACAAAGTTTTCA  2495

Query 1268  TTCGCAAA-------------------------TCACAC-----------------------------------  1281
            |||.||||                         ||||||                                   
Sbjct 2496  TTCACAAATCCAGCTTCAAATACATAGGAGAATTCACACTGGAGAAAAGCCATAGAAATGTAAGGTTTGTGACA  2569

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2570  AGGCTTTCGGGAATGATTCACACGTGGCACCCCATACTAGAATTCACACTGGAGAGAAACCTTACAAGTGCAAT  2643

Query 1282  ---------------------------------------------------------------------CTTGA  1286
                                                                                 |||||
Sbjct 2644  GAGTGTGGCAAACCCTTTAGTGGGCAGTCACCACTTATTCACCATCAAGCAATCCATGGTATAGGGAAACTTGA  2717

Query 1287  --------------------------------------------------------------------------  1286
                                                                                      
Sbjct 2718  CTAATGTAATGATTGTCACAAAGTTTTCAGTAATGCTACAACCATTGCACATCATTGGAGAATCCACAGTGAAG  2791

Query 1287  --------------------------------------------------------------------------  1286
                                                                                      
Sbjct 2792  AGATCTTACAAGTGTAATAAATGTGGCAAATTTTTCAGACATCGTTCATGCCTTGCATTTCACTGGTGAACTCA  2865

Query 1287  ------------------------------------------------------------------AAGACATA  1294
                                                                              ||.|||||
Sbjct 2866  TGCTGGAGAGAAACCTTATAAATGTCATGATTGAGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACATA  2939

Query 1295  GGAGGATTCATACAGGAGAGAAACCTCACAAGTGTGGTGATTGTGGTAAAGCCTTTAATTCACCTTCACACCTT  1368
            ||||||||||||||||||||||||||||||||||||.|||||||||.|||||.||||.|||||.|||||||||.
Sbjct 2940  GGAGGATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGCAAAGCGTTTACTTCACATTCACACCTC  3013

Query 1369  ATTAGGCATCAGAGAATCCATACTGGACAGAAATCTTACAAATGTCATCAGTGTGGCAAGGTCTTTAGTCTGAG  1442
            |||||.|||||||||||||||.||||||||||||||||||||||||||||||||||.|.||||||.||||..||
Sbjct 3014  ATTAGACATCAGAGAATCCATGCTGGACAGAAATCTTACAAATGTCATCAGTGTGGAAGGGTCTTCAGTCCAAG  3087

Query 1443  GTCACTCCTTGCAGAACATCAGAAAATTCCTTTTGGAGACAATTGTTTCAAGTGCAATGAGTATAGCAAACCAT  1516
            |||||||||||||||.|||||||.|||||||||||||||||.|||||||||.||||.|||||||||||||||||
Sbjct 3088  GTCACTCCTTGCAGACCATCAGACAATTCCTTTTGGAGACAGTTGTTTCAAATGCAGTGAGTATAGCAAACCAT  3161

Query 1517  CAAGCATTAAT---------------------------------------------------------------  1527
            |||||||||||                                                               
Sbjct 3162  CAAGCATTAATTGACATTAGAGTCAAATCAGCCTTGACCTGAGTTTGTTGATTTAACATTGATTTCAAGCATTA  3235

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3236  ATTGCCATTAAACTGTTTATGTTAAGAGGATTGCACTGGGGGCCATGGCTCATGCCTGTAATTCCAGCACTTTG  3309

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3310  AGAGGCAAAGACAGGTAGGTCACTGGAGCTCACGAGTTTGAGAACAGCCTAGCCAACAGATGGGAGCTACTTTT  3383

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3384  CCCAGCCTTTATTTTCTTTTTCTTGTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCGCCCAGGTTGGAGTGCAG  3457

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3458  TGGCACGATCTCAGCTCACTGCAACCTCCTCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGTCTCCCAAGTAG  3531

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3532  CTGACACTACAGTTGTGTGCCACCACACCTGGGTAATTTTTTGTGTTTTTAGTAGAGACTGGGTTTCACCGTGT  3605

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3606  TAGCCAGAATGGTCTCTATCTTCTGACTTTATGATCCACCCGACTCCACCTCCCAAAGTGCTGAGATTACAGGA  3679

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3680  GTGAGCCACTGTGCCTGGCCTGTTTTTTGTTTCTTTAACAAAAAGTTATAGAGACTTCTATGAGTATTGTACCG  3753

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3754  AATCTAAATCACAATTGAGTATATAATCATTGAGCGATATTCATTTTTCCAATCAGTATGGGATTTATATCTAT  3827

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3828  TTATACATGTTTTTAATCATTTTGATCAATGTTTATAGATTTCAAGGTACAAACCTCACTTTTTATGTTTATTC  3901

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3902  CTAAATATTTCTTACTTTAAGTTCTTTAGCAAATGGAATTGGTTTTTAATTTTCTTTTAAAATTATTTATTGTT  3975

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 3976  AATGTATGGAAATTCAACTAATTTTTGGTGCTGTTATTCTATTCTGCAAATAAACTGAATGTGTTTGTTAGTTC  4049

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4050  CAGTTGCATTTTGGCTGACTCTTTGTGATTTTCTTTACAGAAGGTCATGTCATCTACAAACAAATAAAATTTGA  4123

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4124  CTTCTTTCTTTCTGATTTGGATGAGTTTGATTTCTTTTGCTATTTCATTGTTCTGGCTAGGACAGCCAGTATTG  4197

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4198  ATTGAATAGAAGGGGTGAGAGCATTCTTGCATCATGTGAGATCCTACAGGAAAAGCATTCCGTTTTCCCTGATT  4271

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4272  GGTTATTTCTGCTGTGGTCATTTCATGGATGGTCTTTGTATTGCTGAGGTAAATTTTCTTCTGTATCTATTTTG  4345

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4346  TGTGGGATTTCTATGATGACTTGATGTTGACTTTTGTGAAATGCTTTTTCTCCATGTATTGAGATGATGTGGTT  4419

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4420  TTCATCTTTCATTGTGTTCAAGTGGTATATCACATTGATTTGCTTGACTATGTTGAACCATCCTTGCATCCCAG  4493

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4494  AAATAAGTGGCACTTGCATATCTACAATCCTTTTAATATCCTCTTGAATACAGTTCGCTAGTACAAGGGGTCTT  4567

Query 1528  --------------------------------------------------------------------------  1527
                                                                                      
Sbjct 4568  CAAGAAGTTCATGAAAAAAATACATATTATGTGAAAATTGCACATGATGTCACATTTTCTGCACCAAAATAAAC  4641

Query 1528  -------------------  1527
                               
Sbjct 4642  TGGCACAAATCTGTTATAA  4660

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