Nucleotide Global Alignment
Description
- Query:
- TRCN0000475531
- Subject:
- NR_163139.1
- Aligned Length:
- 4945
- Identities:
- 1307
- Gaps:
- 3440
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGACCAGGAAGCGGATCCCGTGGAATGACGGTGACGCCGCGGCGGGCGGATTGACTTCTAAAGAATCTTGGTAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGAGGAAGAAACCCAGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTCAGGGACTCATCCAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCCAAGGAAGTCCTCACTGACTCTTTGAGAACTCTATATATGCAAACCCTTTGGGATGGCCACTAAATTTGTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACAGAGTATGGTAACGTGGTTGACTGAACCACAGCCATGAAAGTGAGCTTCCAGCTCTTCTGCTGTTGCACCGC 296
Query 1 --------------------ATGG-------------CTC---TTTCTC------------------------- 13
|||| ||| .|||||
Sbjct 297 AGTCCACATTGCCAGCATTGATGGAACGGGCATCAGCCTCCATCTTCTCCTCAATGGACGTGATCACTGGGCCA 370
Query 14 -----------AGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGG 76
||||||||.|||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCATTGCCTGGAGGGTCTATTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGG 444
Query 77 ACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTG--------- 141
|||||||||||||||||||.|||||.||.||||||||||||||||||||||||||||||||||||
Sbjct 445 ACCCTGCTCAGAGGACTCTTTACAGGGATGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATTTTCGG 518
Query 142 -------------------------------------------------------------------------- 141
Sbjct 519 TCTGTCACCCAGGCTAAAGTGCAGTGGTGTCACCTCGGCTCACTGCAACCTCCACTTCCCAGGTTCAAGCAATT 592
Query 142 -----------------------------------GATATCTCTTCCAAATGCATGATGAATACATTGTCATCA 180
||||||||||||||||||||||||||.|||||.|..|||
Sbjct 593 CTCCTGCCTCAGCCTTCCAAGTAGCTGGGACTACAGATATCTCTTCCAAATGCATGATGAAGACATTCTTCTCA 666
Query 181 ACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAGAGACAAGCAAGTTATCACATTGGAGCATT 254
||||||||||||||||||||||.|.|||||||||||||||||||.||||||||||||.||||||||||||..||
Sbjct 667 ACAGGGCAAGGCAATACAGAAGCGTTCCACACAGGGACATTGCAAAGACAAGCAAGTCATCACATTGGAGATTT 740
Query 255 TTGCTCCCAGGAAATTGAGAAAGACATTCATGACTTTGTGTTTCAGTGGCAAGAAGATGAAACAAATGACCATG 328
|||||.||||.|||||||||||||||||||||.|||...||||||||||.||||||||||||||||||||||||
Sbjct 741 TTGCTTCCAGAAAATTGAGAAAGACATTCATGGCTTCCAGTTTCAGTGGAAAGAAGATGAAACAAATGACCATG 814
Query 329 AAGCACCCATGACAGAAATAAAAAAGTTGACTAGTAGTACAGACCGATATGATCAAAGGCATGCTGGAAACAAG 402
.||||||||||||||||||.|||.||||||||.|||||||||.||.|.||||||||||||||||||||||||||
Sbjct 815 CAGCACCCATGACAGAAATCAAAGAGTTGACTGGTAGTACAGGCCAACATGATCAAAGGCATGCTGGAAACAAG 888
Query 403 CCTATTAAAGGTCAGCTTGAATCAAGATTTCATTTGCATTTGC-----------------------GAAG---- 449
|.||||||||.||||||||.||.|||.|||||||.||||.||| ||||
Sbjct 889 CATATTAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCTGCCTGAACTGCACATATTTCAGCCTGAAGGGAA 962
Query 450 -------------------------------------------------------------------------- 449
Sbjct 963 AATTGGTAATCAAGTTGAGAAGTCTATCAACAATGCTTCCTCAGTTTCAACATCCCAAAGAATTTGTTGTAGGC 1036
Query 450 -------------------------------------------------------------------------- 449
Sbjct 1037 CCAAAACCCATATTTCTAATAAGTATGGAAATAATTCCCTCCATTCTTCATTACTCACACAAAAACGGAATGTA 1110
Query 450 -ACATAGGAGAA-------------------------------------------------------------- 460
||||..|||||
Sbjct 1111 CACATGAGAGAAAAATCTTTCCAATGTATTGAGAGTGGCAAATCCTTTAATTGTAGCTCACTTTTAAAAAAACA 1184
Query 461 -------------------------------------------------------------------------- 460
Sbjct 1185 TCAGATAACCCACTTAGAAGAGAAACAATGTAAATGTGATGTATATGGCAAGGTATTTAATCAGAAGCGATACC 1258
Query 461 -------------------------------------------------------------------------- 460
Sbjct 1259 TTGCATGCCATCGTAGATCTCACATTGATGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGATCTTTGGTCAC 1332
Query 461 ----------------------------TTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGAGAAAGT 506
|||||||||.|||.||||||||..||||||||||||||||.|||||
Sbjct 1333 AATACATCCCTCTTCCTTCACAAGGCGCTTCATACTGCAGACAAACCTTATGAATGTGAAGAATGTGACAAAGT 1406
Query 507 TTTCAGTTGCAAATCACATCTTGAAATACATAGGATAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTT 580
|||||||.||||||||||.|||||||.|||||.|||||||.|||||||||.|||||||||||||||||||||||
Sbjct 1407 TTTCAGTCGCAAATCACACCTTGAAACACATAAGATAATTTATACTGGAGGGAAACCATACAAATGTAAGGTTT 1480
Query 581 GCGACAAGGCTTTTAAGCATG--ATTCACACCTGGCAAAACATACTAGAATTCACAGGGGAGACAAACATTACA 652
|.|||||.|||||.| |||| |||||.||||.|||||||||||||.||||||||..|||||.||||.|||||
Sbjct 1481 GTGACAAAGCTTTCA--CATGTAATTCATACCTAGCAAAACATACTATAATTCACACTGGAGAGAAACCTTACA 1552
Query 653 CATGTAATGAATGTGGCAAGGTTTTTGATCAAAAAGCAACCCTTGCATGTCATCATAGAAGTCATACTGGAGAG 726
..||||||||||||||||||||||||.|||.|....|||||||||||.|.||||.|||...|||||||||||||
Sbjct 1553 AGTGTAATGAATGTGGCAAGGTTTTTAATCGACTGTCAACCCTTGCACGCCATCGTAGGCTTCATACTGGAGAG 1626
Query 727 AAACCTTATAAGTGTAATGAGTGTGGCAAGACCTTT--AGTCAGACATCACACCTTGTGTACCATCATAGACTG 798
|||||||||.|.|||.|.||.|||| ||.|..||| ||||..|.||||||.||||.....|||.|.||..|.
Sbjct 1627 AAACCTTATGAATGTGAAGAATGTG--AAAAAGTTTTCAGTCGCAAATCACATCTTGAAAGACATAAGAGGATT 1698
Query 799 CATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAGACCTTCGCTCGAAATTCAGTCCTCGTAATTCA 872
|||||||||||||||||.|||||||||||.|..||||.||||.|.||.||....||||||..|||.|.||..||
Sbjct 1699 CATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTTGCATATAATTCATACCTGGCAAAACA 1772
Query 873 TAAGGCAGTTCATACTGCAGAGAAACCCTATAAGTGTAATGAATGTGGCAAGGTTTTTAAGCAACGAGCAACTC 946
||....|.||||.||||.||||||.||.||.|||||||||||||||||||||||||||||.||||.|.||||||
Sbjct 1773 TAGTATAATTCACACTGGAGAGAAGCCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAACTC 1846
Query 947 TTGCAGGACATCGTAGAGTTCACACTGGAGAGAAACCTTACAGATGTGAAGAATGCGACAAAGTTTTCAGTCGC 1020
|||||.|.||||.||||.||||.||||.|||||||||.||||.||||||||||||.||||||||||||||..||
Sbjct 1847 TTGCACGCCATCATAGACTTCATACTGCAGAGAAACCATACAAATGTGAAGAATGTGACAAAGTTTTCAGGTGC 1920
Query 1021 AAATCACATCTTGAAAGACATAGGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGC 1094
||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 AAATCACACCTTGAAAGACATAGGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGC 1994
Query 1095 TTTCCGGAGTGATTCACGTCTTGCAGAACATCAGAGAGTTCATACTGGAGAGAGACCTTACACATGTAATGAAT 1168
||||||||||||||||.|.|||.||||||||||||||||||||||||||||||.|||.||||..||||||||||
Sbjct 1995 TTTCCGGAGTGATTCATGCCTTACAGAACATCAGAGAGTTCATACTGGAGAGAAACCATACATGTGTAATGAAT 2068
Query 1169 GTGGCAAGGTTTTTAGTACAAAAGCGTACCTCGCATGTCATCAAAAACTTCATACTGGAGAGAAACTTTACGAA 1242
|||||||||||||||||||||||||..||||.|||||||||||.|||||||||||||.||||||||..|||.||
Sbjct 2069 GTGGCAAGGTTTTTAGTACAAAAGCAAACCTTGCATGTCATCATAAACTTCATACTGCAGAGAAACCGTACAAA 2142
Query 1243 TGTGAAGAATGTGACAAAGTTTACATTCGCAAATCACACCTTGAAAGACATAGGAGGATTCATACAGGAGAGAA 1316
||||||||||||||.|||||||.||.|||||||||||||.|.|||||||||||||||||||||||.||||||||
Sbjct 2143 TGTGAAGAATGTGAGAAAGTTTTCAGTCGCAAATCACACATGGAAAGACATAGGAGGATTCATACTGGAGAGAA 2216
Query 1317 ACCTCACAAGTGT--GGTGATTGTGGTA-AAGCCTTTAATTCACC-------TTCACACCTTATTAGG-----C 1375
|||..||||.||| ||| ||||| | |||.|||| || ||||||||| || |
Sbjct 2217 ACCGTACAAATGTAAGGT--TTGTG--ACAAGGCTTT------CCGGAGGGATTCACACCT-----GGCACAAC 2275
Query 1376 ATCAGAGAATCCATACTGGACAGAAATCTTACAAATGTCATCAGTGTGGCAAGGTCTTTAGTCTGAGGTCACTC 1449
||||||||.|.|||||||||.|||||.|||||||.|||.||.|||||||||||..|||..|||.||..||| ||
Sbjct 2276 ATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCCGTCAGACATCA-TC 2348
Query 1450 -CTTGCAGAA--CATCAGAAAATTCCTTTTGGAGACAATTGTTTCAAGTGCAATGAGTATAGCAA--------- 1511
||| |.|| ||||..|...|||.|..||||||.||...||.||||||.|||||||.|.||||
Sbjct 2349 GCTT--ATAATCCATCGTAGGCTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAG 2420
Query 1512 --------------------ACCATCA-AGCATTAAT------------------------------------- 1527
||||||| ||..||.||
Sbjct 2421 TCAGATGTCATCCCTCGTATACCATCATAGGCTTCATAGTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCA 2494
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2495 AGGTTTTTAATCAACAAGCACACCTTGCACAGCATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAAT 2568
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2569 GAGTGTGGCAAGACCTTCAGTCAGATGTCAAACCTTGTATACCATCATAGACTTCATAGTGGAGAGAAACCTTG 2642
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2643 AAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTCAAACCTTGTATACCATCATAGACTTCATAGTGGAG 2716
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2717 AGAAACCTTAAAAGTGTAATGAGTGTGGCAACACCTTCCATCACAATTCAACCCTTGTAAGTCACAAAGCCATT 2790
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2791 CATACTGGAGAGAAACTTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAAAAAACAACCCTTGCACGTCA 2864
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2865 TCATAGAATTCATACTGCAGAGAAACTTTACAAATAGGAAGAATGTGACAAAGTTTTCGGTTGCAAATCAAACC 2938
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2939 TTGAAACACATAAGAAAATGCATGCTGAAGAGAAACCACACAGATGTAAGGTTTATGACAAGATTTTTGAATAT 3012
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3013 AATTCATACCTGGCAAAACATATTAGAATTCAAACTGGAGAGAAACCTTACAAATGTGATGAGTGTGGCAACAC 3086
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3087 CTTTGGTCAAAATTCATACCTTGTAATTCAAAAGGCAATTCGTATTGGAGAGAAACCCTACAAGTGTAATGAAT 3160
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3161 GTGGCATAGTTTTTAATCAACAGTCACACCTTGCAAGTCATCATAGTCTTCATACTGCAGAGAAATCTTACAAA 3234
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3235 TGTGAAGACTGTGACAAAGTTGTCAGTCACAAATCACAGCTTGAAAGACAGGAGAATTCATACTGGAGAAAAAA 3308
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3309 CATACAAATGTAAGGTTTGTAACAAGGCTTTTGGGAGTGATTCACACCTGGCACACCATACTAGAATTCACACT 3382
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3383 GGAGAGAAACCTTACAAGTGCAATGAGTGTGGCAAAGCCTTTAGTGGGCAGTCACCACTTATTCACCATCAAGC 3456
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3457 AATCCATAGTATAGGGAAACTTGACTAATATAATGATTGTCACAAAGTTTTCAGTAATGCTACAACCATTGCAA 3530
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3531 ATCATTGGAGAATCCATAATGAGAGATCTTACAAGTGTAATAAATGTGACAGATTTTTCAGATATCGTTCATAT 3604
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3605 ATTGCTATTCATCATCGAACTCATGCTGGAGAGAAACCTTATAAATGTCATGATTGTGGCAAGGTCTTCAGTCA 3678
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3679 AGTTTCATCCTATGCAAAACATAGGAGGATTCATACAGGAGAGAAACTCACAAGTGTGATGATTGTGGCAAAGC 3752
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3753 GTTTACTTCACATTCACACCTCAATAGACATCAGAGAATCCATGCTGGACAGAAATCTTACAAATGTCATCAGT 3826
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3827 GTGGTAAGGTCTTCAGTCCGAGATCACTCCTTGCAGACCATCAGACAATTCCTTTTGGAGACAGTTGTTTCAAA 3900
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3901 TGCCATTAGTATAGCAAGCCATCAAGCATTAATTGACATTACAGTTAAATGAGCACTGACCTGAGTTTGAGTTG 3974
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3975 ACTTAACATTGAGTTTAAGCATTAATTGACATTAAACTGTTTATGTTAAGAGGACTGGGCTGGGCACTGTGGCT 4048
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 4049 CACGCCTGCAATGCCAGCACTTTGAGAGGCCAAGACTGGTAGGTCACTGGAGGTTAAGAGTTTGAGAACAGCCT 4122
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 4123 GGCCAACAGACGGGAGCCACTTTTCCCAGCCTGTGTTTTCATTTCTATTCTTTCTTTCTTTTTTCTTTTTTTTG 4196
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 4197 TTTTTGTTTTTGAGATGGAGTCTCTTGCTCTGTCATCCAGGTTGGAGTGCAGTGGCATGATCTTGACTCACTAC 4270
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 4271 AACCTCCGCCTCCCAGGTTCAAGCGATCCTCCTGCCTCAGTCTCCTGACTAGCTGGGACTACAGGTGCATGCCA 4344
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 4345 CCACACCTGGATAATTTTTTGTATTTTTAGTAGAGACTGGGTTTCGCTGTGTTAGCCTGGATGGTCTCGATTTT 4418
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 4419 CTGATCTTATGATTCACCCACCTCTACCTCCCGAAGTGCTGAGATTATGGGCGTGAGCCACCGTGACTGGCCTG 4492
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 4493 TTTTTTGTTTCTTTAACAAAAAGTTATGGGGATTTCTATGAGTATTGTGTTGAATCTAAATCACATTCGGTTAT 4566
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 4567 ATAATCATTGAGCAATACTAATTTTTCCAATCAGTATGGATTGTATGTGTATTTATATGTTTTTAATCATTTTG 4640
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 4641 ATCAATGTTTGTAGATTTCAAGGTACAAACTTCTCACCTTTATATGTTTATTCCTAAATATTTCTTACTTTAAG 4714
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 4715 CTCTTTAGCAAATGGAAGTGGTTTTTAATTTTATTTTAAAATTATTTAATGTTAATGTATGGAAATTCAACTAA 4788
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 4789 TTTTTGGTGCTATTATTCTATTCTGCAAATACACTGAATATGTTTATTAGTTCCAGTTGTATTTTGGTTGACTG 4862
Query 1528 ------------------------------------------------------------- 1527
Sbjct 4863 TGATTTTCTTCACAGATCATGTCATCTACAAACAAATAAAATTTGACTTCTTTCTTTCTGA 4923