Nucleotide Global Alignment

Description

Query:
TRCN0000476486
Subject:
NM_001161501.1
Aligned Length:
2073
Identities:
1073
Gaps:
843

Alignment

Query    1  ATGGCTCTTCCTCAGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCT  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CTTCCAAATGCATGATGAAGATGTTCTCATCAACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTG  222
                       |||||||||..|.|||..||||||||.||||||||||||||||||.|||||||||||||||||
Sbjct    1  -----------ATGATGAAGGAGGTCTTGTCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTG  63

Query  223  CAAATACATGCAAGTCATCACATTGGAGATACTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTT  296
            ||||.|||||.|||||||||||||||||||..||||||||||||||||||||||||.|||||||||.|||.|||
Sbjct   64  CAAAGACATGAAAGTCATCACATTGGAGATTTTTGCTTCCAGGAAATTGAGAAAGAAATTCATGACATTGAGTT  137

Query  297  TCAGTGGCAAGAAAATGAAACAAATGGCCATGAAGCACTCATGACAAAAATCAAAAAGTTGA-TGAGTAGTACA  369
            ||||||.||||||.||||||.||||||||.||||||||.||||||||||||.|||||||||| || ||||.|||
Sbjct  138  TCAGTGTCAAGAAGATGAAAGAAATGGCCTTGAAGCACCCATGACAAAAATAAAAAAGTTGACTG-GTAGCACA  210

Query  370  GAGCGACATGATCAAAGGCATGCTGGAAACAAACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCT  443
            ||.|.|||||||||.|||||||||||||||||.|||||||||.||.|||||||||||||||||.||||.|||||
Sbjct  211  GACCAACATGATCACAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCT  284

Query  444  GCCTGAAGTGCACATATTTCACCCCGAAGGGAAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCT  517
            |||||||.|.|||||||||||...|.||||..||||||||||||||.||||||||.|||..||.||||||..||
Sbjct  285  GCCTGAACTCCACATATTTCAGATCAAAGGTGAAATTGGTAATCAACTTGAGAAGTCTACTAATGATGCTCCCT  358

Query  518  CAGTTTCAGCATCCCAACGAATTTCCTGTAGGCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTC  591
            ||||||||.|||.||||.||||||||||||||||..||||.|..|||||||||||.|||.||||||||..|||.
Sbjct  359  CAGTTTCAACATTCCAAAGAATTTCCTGTAGGCCCCAAACCCAGATTTCTAATAACTATGGGAATAATCCCCTG  432

Query  592  CAGTCTTCATTACTCACACAAAAACGGGAAGTACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAA  665
            .|.||||||||||||.|||||||||.|||||||||||..||||||||||||||||||.|||||.||||||||||
Sbjct  433  AATTCTTCATTACTCCCACAAAAACAGGAAGTACACATGAGAGAAAAATCTTTCCAATGTAATAAGAGTGGCAA  506

Query  666  AGCCTTTAATGGTAGCTCACTCTTAAAAAAACATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATG  739
            ||||||||||.|||||||||||||||..|||||.||||||..||||||||||||||||||.|||||||||||||
Sbjct  507  AGCCTTTAATTGTAGCTCACTCTTAAGGAAACACCAGATACCCCATTTAGGAGACAAACAATATAAATGTGATG  580

Query  740  TATGCGGCAAGGACTTTCATCAGAAGCGATACCTTGCATGCC---ATAGATGTCACACTGGTGAGAATCCTTAC  810
            ||||.||||||..||||.||||..|||.||||||||||||||   |||||||||||||||.||||||.||||||
Sbjct  581  TATGTGGCAAGCTCTTTAATCACGAGCAATACCTTGCATGCCATGATAGATGTCACACTGTTGAGAAACCTTAC  654

Query  811  AAGTGTAATGAGTGTGGCAAGACATTCA----------------------------------------------  838
            ||||||||.||||||||||||||.||||                                              
Sbjct  655  AAGTGTAAAGAGTGTGGCAAGACCTTCAGTCAGGAGTCATCCCTTACCTGCCATCGTAGACTTCATACTGGAGT  728

Query  839  --------------------------------------GTCACAATTCAGCCCTGTTAGTTCACAAGGCAATTC  874
                                                  ||||.|||||||||||..||.||.|.|||||||||.
Sbjct  729  AAAACGTTACAATTGTAATGAGTGTGGCAAGATCTTTGGTCAAAATTCAGCCCTTCTAATTGATAAGGCAATTG  802

Query  875  ATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCACGTCAT  948
            ||||||||||.||.||||||||||||||||||||||.|||||.||||||||||||||||.|.|||.||   |||
Sbjct  803  ATACTGGAGAAAATCCTTACAAGTGTAATGAATGTGACAAGGCTTTTAATCAACAATCACAACTTTCA---CAT  873

Query  949  CATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACC-  1021
            ||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||| ||| 
Sbjct  874  CATAGAATTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGGAAATCA-ACCA  946

Query 1022  TTGAAAGACATAGGAGAATTCACACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCA-----  1090
            ||||.|.|||||.|||||||||.|||||||||||||||||||.|||||||||||||||||..|||||||     
Sbjct  947  TTGAGACACATAAGAGAATTCATACTGGAGAGAAACCATACAGATGTAAGGTTTGTGACACAGCTTTCACGTGG  1020

Query 1091  ----------------GAC-------------------------------------------------------  1093
                            |||                                                       
Sbjct 1021  CATTCACAGCTGGCTCGACATAGAAGAATTCATACTGCAAAGAAAACTTATAAATGTAATGAGTGTGGCAAGAC  1094

Query 1094  --------------------------------------------------------------------------  1093
                                                                                      
Sbjct 1095  CTTCAGTCACAAGTCATCCCTTGTATGCCATCATAGACTTCATGGTGGAGAGAAATCTTACAAATGTAAGGTTT  1168

Query 1094  GTGA------------------TTCACACCTGGCACAACATACTGTAATTCACACTGGAGAGAAACCTTACAAG  1149
            ||||                  ||||||.||||||.||||||||..||||.||..||||||.||||||||||||
Sbjct 1169  GTGACAAGGCTTTTGTGTGGAGTTCACAACTGGCAAAACATACTAGAATTGACTGTGGAGAAAAACCTTACAAG  1242

Query 1150  TGTAATGAGTGTGGCAAGACCTTCGTTCAAAATTCATCTCTTGTAATGCATAAGGTC-ATTCATACTGGAGAGA  1222
            ||||||||.|||||.||||||||.|.||||||||||..||||.||||.||||| ||| |||||||||||.|||.
Sbjct 1243  TGTAATGAATGTGGGAAGACCTTTGGTCAAAATTCAGATCTTTTAATTCATAA-GTCAATTCATACTGGGGAGC  1315

Query 1223  AACGTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTG-----CAT-------GTCAT  1284
            |||.||||||.|||.|||||||||..||||||||.|.||..|||||||.|||||     |||       |||||
Sbjct 1316  AACCTTACAAATGTGATGAATGTGAAAAGGTTTTCAGTCGTAAATCAAGCCTTGAGACACATAAGATAGGTCAT  1389

Query 1285  ----------------------------------------------CG--------------------------  1286
                                                          ||                          
Sbjct 1390  ACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTTGCGTGTCATTCCTATCTGGCAAAACATAC  1463

Query 1287  TAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTG  1360
            ||||.||||||.|||||||||||||||||||||||||||.||..|||||...||.|.||..|..|||.||||||
Sbjct 1464  TAGAATTCATAGTGGAGAGAAACCTTACAAGTGTAATGAGTGCAGCAAGACCTTCAGTCACAGGTCATACCTTG  1537

Query 1361  AACGTCATCATAGACTTCATACTGGAAAGAAATCT---------------------------------------  1395
            .|.|.|||||||||.||||||.|||..|||||.||                                       
Sbjct 1538  TATGCCATCATAGAGTTCATAGTGGTGAGAAACCTTACAAGTGTAATGAGTGCAGCAAGACCTTCAGTCGCAGG  1611

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1612  TCATCCCTTCATTGCCATCGTAGACTTCATAGTGGTGAGAAACCTTACAAGTGTAATGAGTGTGGCAATACCTT  1685

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1686  CCGTCACTGCTCATCCCTTATATACCATCGTAGACTTCATACTGGAGAGAAATCTTACAAATGTACAATTTGTG  1759

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1760  ACAAGGCTTTCGTGCGTAATTCACTCCTGTCAAGACATACCAGAATTCACACTGCAGAGAAACCTTACAAGTGT  1833

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1834  AATGAATGTGGGAAGGCTTTTAATCAACAATCACACCTTTCACGTCATCATAGAATTCATACTGGAGAGAAACC  1907

Query 1396  -  1395
             
Sbjct 1908  T  1908

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