Nucleotide Global Alignment

Description

Query:
TRCN0000476486
Subject:
NM_001289952.1
Aligned Length:
2249
Identities:
1200
Gaps:
865

Alignment

Query    1  ATGGCTCTTCCTCAGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74
            ||||||.||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCTTTTTCTCAGGGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74

Query   75  GGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCT  148
            |||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||.||
Sbjct   75  GGACCCTGCTCAGAGGACTCTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCT  148

Query  149  CTTCCAAATGCATGATGAAGATGTTCTCATCAACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTG  222
            ||||||||||||.|||||||..|||||..|||||||..||||||||.|.|||||||.||||..|||||||||||
Sbjct  149  CTTCCAAATGCACGATGAAGGAGTTCTTGTCAACAGCGCAAGGCAACAGAGAAGTGTTCCATGCAGGGACATTG  222

Query  223  CAAATACATGCAAGTCATCACATTGGAGATACTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTT  296
            ||||||||||.|||||||||||.|||||||..|||||.||||||..||||.||||||||||||||||.||..||
Sbjct  223  CAAATACATGAAAGTCATCACAATGGAGATTTTTGCTACCAGGATGTTGATAAAGATATTCATGACTATGAATT  296

Query  297  TCAGTGGCAAGAAAATGAAACAAATGGCCATGAAGCACTCATGACAAAAATCAAAAAGTTGATGAGTAGTACAG  370
            |||.|||||||||.||||||.|||||||||||||||||.|||||||||||||||||||||||...|||.|||||
Sbjct  297  TCAATGGCAAGAAGATGAAAGAAATGGCCATGAAGCACCCATGACAAAAATCAAAAAGTTGACAGGTATTACAG  370

Query  371  AGCGACATGATCAAAGGCATGCTGGAAACAAACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTG  444
            |.|||.||||||||||.||||||.|||||||.|||||||||.||.|||||||||||||||||||||||||||||
Sbjct  371  AACGATATGATCAAAGTCATGCTAGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTCATTCGCATCTG  444

Query  445  CCTGAAGTGCACATATTTCACCCCGAAGGGAAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTC  518
            ||||||.|||||||||||||..||||||.||||||||.|||||||||||.||||.||.||.|||||||||.||.
Sbjct  445  CCTGAAATGCACATATTTCAGACCGAAGAGAAAATTGATAATCAAGTTGTGAAGTCTGTCCACGATGCTTCCTT  518

Query  519  AGTTTCAGCATCCCAACGAATTTCCTGTAGGCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCC  592
            .||||||.||.|||||.|||||||.||||||||.|||||.|.|||.||||||||..||.|||||||||||....
Sbjct  519  GGTTTCAACAGCCCAAAGAATTTCTTGTAGGCCCAAAACCCATATATCTAATAACCATGGGAATAATTTCTGGA  592

Query  593  AGTCTTCATTACTCACACAAAAACGGGAAGTACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAA  666
            |.||||||||||||||||||||||.|||||||||||..||||||||||||||||||.|||||||||||||||||
Sbjct  593  ATTCTTCATTACTCACACAAAAACAGGAAGTACACATGAGAGAAAAATCTTTCCAATGTAATGAGAGTGGCAAA  666

Query  667  GCCTTTAATGGTAGCTCACTCTTAAAAAAACATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGT  740
            |||||||||...|||||||||||||..||||||||||||||||||||||.|||||||   ||||||||||||||
Sbjct  667  GCCTTTAATTACAGCTCACTCTTAAGGAAACATCAGATAATCCATTTAGCAGACAAA---TATAAATGTGATGT  737

Query  741  ATGCGGCAAGGACTTTCATCAGAAGCGATACCTTGCATGCCA---TAGATGTCACACTGGTGAGAATCCTTACA  811
            |||.||||||..||||.|||||||||||.||||.||||||||   |||||||||||||||||||||||||||||
Sbjct  738  ATGTGGCAAGCTCTTTAATCAGAAGCGAAACCTAGCATGCCATCGTAGATGTCACACTGGTGAGAATCCTTACA  811

Query  812  AGTGTAATGAGTGTGGCAAGACATTCAGTCACAATTCAGCCCTGT-----------TAG--TTC----------  862
            ||||||||||||||||||||||.||||||||.|..|||.|||| |           |||  |||          
Sbjct  812  AGTGTAATGAGTGTGGCAAGACCTTCAGTCAGACGTCATCCCT-TACATGCCATCGTAGACTTCATACTGGAGA  884

Query  863  --------ACAA--------------------------------------------------------------  866
                    ||||                                                              
Sbjct  885  GAAACCTTACAAATGTGAAGAATGTGACAAAGCTTTCCATTTCAAATCAATACTTGAAAGACATAGGATAATTC  958

Query  867  -----------------------------------GGCAA----------------------------------  871
                                               |||||                                  
Sbjct  959  ATACTGAAGAGAAACCATATAAGTGTAATGAGTGTGGCAAGACCTTTAGGCAGAAGTCAATCCTTACACGCCAT  1032

Query  872  -------TTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCA------------  926
                   ||||||||||||||||||||||||||||||||||.|||||||||...||||.|||            
Sbjct 1033  CATCGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTTAGTCACAAGTCATCCCT  1106

Query  927  --------------------------------------ACAA--------------------------------  930
                                                  ||||                                
Sbjct 1107  TACATGCCATCATAGACTTCATACTGGAGAGAAACCCTACAAATGTAATGAGTGTGGCAAGACCTTTAGTCACA  1180

Query  931  --TCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTT  1002
              |||..||||.||.|.||||.||||.|||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1181  AGTCATCCCTTACATGCCATCGTAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGCT  1254

Query 1003  TTCAGTCGCAAATCACACCTTGAAAGACATAGGAGAAT------------------------------------  1040
            |.||||..||.||||.|..||||||.||||.|||.|||                                    
Sbjct 1255  TACAGTTTCAGATCAAATTTTGAAATACATCGGAAAATTCATACTGAAGACAATGCTTACAAGTGTAATGAGTG  1328

Query 1041  ------------------------------------------------TCACACTGGAGAGAAACCATACAAAT  1066
                                                            |||.|||||||||.||||.|||||||
Sbjct 1329  TGGAAAGACCTTTAGCCGGACATCATCCCTTACATGCCATCGTAGACGTCATACTGGAGAGCAACCTTACAAAT  1402

Query 1067  GTAAGGTTTGTGACAAGGCTTTCAGACGT---GATTCACACCTGGCACAACATACTGTAATTCACACTGGAGAG  1137
            ||.|.|..||||||||.||||||   |||   .|.|||.||||.|.|..|||||....||||||.|||||||||
Sbjct 1403  GTGAAGAATGTGACAAAGCTTTC---CGTTTCAAATCAAACCTTGAAAGACATAGGAGAATTCATACTGGAGAG  1473

Query 1138  AAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCGTTCAAAATTCA----TCTCTTGTAATGCATAAGGTCA  1207
            |||||.|||||||||||||||||||||||||||||...||..||.|||    ||.|.||..|| ||||  |.| 
Sbjct 1474  AAACCATACAAGTGTAATGAGTGTGGCAAGACCTTTAGTCGGAAGTCATACCTCACATGCCAT-CATA--GAC-  1543

Query 1208  TTCATACTGGAGAGAAACGTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCATGT  1281
            |||||||||||||||||..|||||||||||||||.||.||||||...||||.|...||.|||..||||.|.||.
Sbjct 1544  TTCATACTGGAGAGAAAGCTTACAAGTGTAATGAGTGCGGCAAGACCTTTAGTTGGAAGTCATCCCTTACCTGC  1617

Query 1282  CATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAA  1355
            |||||||||||||||.|||||||||||||||||||||||||.||.|||||||||...||.||||...|.|.||.
Sbjct 1618  CATCGTAGACTTCATTCTGGAGAGAAACCTTACAAGTGTAAGGAGTGTGGCAAGACCTTCAATCAGCAGTTAAC  1691

Query 1356  CCTTGAACGTCATCATAGACTTCATACTGGAAAGAAATCT----------------------------------  1395
            ||||.||||.||||.|||||||||||.||||.||||..||                                  
Sbjct 1692  CCTTAAACGCCATCGTAGACTTCATAGTGGAGAGAACCCTTACAAATGTGAAGATAGTGACAAAGCTTACAGTT  1765

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1766  TCAAATCAAACCTTGAAATACATCAGAAAATTCATACTGAAGAGAATCCTTACAAGTGTAATGAGTGTGGCAAG  1839

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1840  ACCTTCAGTCGGACGTCATCCCTTACATGCCATCGTAGACTTCATACCGGAGAGAAACCTTACAAATGTGAAGA  1913

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1914  ATGTGACAAAGCTTTCCGTGTGAAATCAAACCTTGAAGGACATAGGAGAATTCATACTGGAGAGAAACCTTACA  1987

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1988  AGTGTAATGAGTGTGGCAAGACCTTTAGTCGGAAGTCATATTTTATATGCCATCATAGACTTCATACTGGAGAG  2061

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2062  AAACCTTATAAGTGTAATGAGTGTGGCAAGAACTTTAGTCAGAAGTCATCCCTTATATGCCACCATAGACTTCA  2135

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2136  TACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTTAGTCAGAAGTCAAACCTTACATGCCATC  2209

Query 1396  -----------------------------  1395
                                         
Sbjct 2210  GTAGACTTCATACTGGAGAAAAACAAGTG  2238

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