Nucleotide Global Alignment

Description

Query:
TRCN0000476486
Subject:
XM_017026798.2
Aligned Length:
2493
Identities:
1303
Gaps:
1101

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAGAGGGTCTGTCTCTTCCCTCACCAAAACCCGAAAAACAGCGGCTAGGTACGCGGCTGAGAGAAGCACAGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCCGCCCCCGCCCCGCGTCTGCCGGTTCTACAGGGCAGGTCTCTCCGCCTGGCGCCCCGCCCCTACCTCGCCCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGCCCCGCCCCTACCTCGCCCAGGCCCCGCCCACCTCGTTGGCTCCACGGAGGCCTGGCTTCTGTCCTGTGCTT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTAGATTCGCCCGGACCAGGAAGCGGATCGCGTGGACTGGAAGTCACACTGCGGCGACTCTGGGTATGTGAAGA  296

Query    1  ----------------------------------------ATGGCTCTTCCTCAGGGTCTACTGACATTCAGGG  34
                                                    |||||||||||||||||||||.||||||||||||
Sbjct  297  AGAAACTCAGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTCAGGGTCTATTGACATTCAGGG  370

Query   35  ATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGACGTG  108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGACGTG  444

Query  109  ATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCTCTTCCAAATGCATGATGAAGATGTTCTCATCAAC  182
            |||||||||||||||||||||||||||||||||||||.|||||||||||||||||||.|   |||||||||||.
Sbjct  445  ATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATATCTCTTCCAAATGCATGATGGA---GTTCTCATCAAT  515

Query  183  AGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATGCAAGTCATCACATTGGAGATACTT  256
            |||..|||||||||||||||||.|||||||||||||||||||||.||..||||||||||||||||||||...||
Sbjct  516  AGGGAAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGACTGGCAAGTCATCACATTGGAGAATGTT  589

Query  257  GCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAAGAAAATGAAACAAATGGCCATGAA  330
            ||||||||||||||||||||||.||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct  590  GCTTCCAGGAAATTGAGAAAGACATTCATGACTTTGTGTTTCAGTGGCAAGAAGATGAAACAAATGGCCATGAA  663

Query  331  GCACTCATGACAAAAATCAAAAAGTTGATGAGTAGTACAGAGCGACATGATCAAAGGCATGCTGGAAACAAACC  404
            ||||.|||||||.||||||||.||||||.|.||||||||||.|.|.|||||||||||||||||||||||||.||
Sbjct  664  GCACCCATGACAGAAATCAAAGAGTTGACGGGTAGTACAGACCAATATGATCAAAGGCATGCTGGAAACAAGCC  737

Query  405  TATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTGCACATATTTCACCCCGAAGGGAAAA  478
            |||||||.||.||||||||||||||||||||||.||||||||||||.|||||||||||||.|||||||||||||
Sbjct  738  TATTAAATATCAGCTTGGATCAAGCTTTCATTCACATCTGCCTGAACTGCACATATTTCAGCCCGAAGGGAAAA  811

Query  479  TTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGCATCCCAACGAATTTCCTGTAGGCCA  552
            |||||||||||.||||||||.||||||||.||||||.||||||||||.||||||||.|||||||.||||||||.
Sbjct  812  TTGGTAATCAACTTGAGAAGTCTATCAACAATGCTTCCTCAGTTTCAACATCCCAAAGAATTTCTTGTAGGCCC  885

Query  553  AAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCATTACTCACACAAAAACGGGAAGTACA  626
            |||||.|.||||||||||||.|||.|||||||||||.||||.|||||||||||||||||.||||.|||.|||||
Sbjct  886  AAAACCCATATTTCTAATAACTATGGGAATAATTTCTTCCATTCTTCATTACTCACACAGAAACAGGATGTACA  959

Query  627  CACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAATGGTAGCTCACTCTTAAAAAAACATC  700
            ||..|.||||||||||||||||..||||||||||||||||.||||||||.|||||||||||||.||||||||||
Sbjct  960  CAGGAAAGAAAAATCTTTCCAATTTAATGAGAGTGGCAAATCCTTTAATTGTAGCTCACTCTTTAAAAAACATC  1033

Query  701  AGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAAGGACTTTCATCAGAAGCGATACCTT  774
            |||||||.|||.|||||||.|||||.|||||||||||||||||.|||||.||||||.|||||||||||||||||
Sbjct 1034  AGATAATTCATCTAGGAGAGAAACAATATAAATGTGATGTATGTGGCAAAGACTTTAATCAGAAGCGATACCTT  1107

Query  775  GCATGCCA---TAGATGTCACACTGGTGAG--------------------------------------------  801
            |||..|||   |||||||||||||||||||                                            
Sbjct 1108  GCACACCATCGTAGATGTCACACTGGTGAGAAACCTTACATGTGTAATAAATGTGGCAAGGTTTTTAATAAAAA  1181

Query  802  ----------------------------------------AATCCTTACAAGTGTAATGAGTGTGGCAAGACAT  835
                                                    ||.|||||||||||||||||||||||||||||.|
Sbjct 1182  AGCATACCTTGCACGTCATTATAGACGTCATACTGGAGAAAAACCTTACAAGTGTAATGAGTGTGGCAAGACGT  1255

Query  836  TCAGTCACAATTCAGCCCTGTTAGTTCACAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGT  909
            |||||.||||.||||||||.||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 1256  TCAGTGACAAGTCAGCCCTCTTAGTTCACAAGACAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGT  1329

Query  910  GGCAAGGTTTTTAATCAACAATCAAACCTTGCACGTCATCATAGAG----------------------------  955
            ||||||||||||||||||||||||||||||||||||||||||||||                            
Sbjct 1330  GGCAAGGTTTTTAATCAACAATCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGAGAAACCTTACCAATG  1403

Query  956  --------------------------------------------------------------------------  955
                                                                                      
Sbjct 1404  TAAAGAATGTGACAAAGTTTTCAGTCGCAAATCATACCTTGAAAGACATAGGAGAATTCACACTGGTGAGAAAC  1477

Query  956  --------------------------------------------------------------------------  955
                                                                                      
Sbjct 1478  CATACAAATGTAAGGTTTGTGACAAGGCTTTCAGACATGATTCACACCTGGCACAGCATATTGTAATTCACACT  1551

Query  956  --------------------------------------------------------------------------  955
                                                                                      
Sbjct 1552  AGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAACGTTTGGTGAAAATTCAGCCCTCTTAGTTCACAAGAC  1625

Query  956  --------------------------------------------------------------------------  955
                                                                                      
Sbjct 1626  AATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTCAATCAACAATCAAACCTTGCAC  1699

Query  956  ------------TTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCA  1017
                        |||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct 1700  GTCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTAAAGAATGTGACAAAGTTTTCAGTCGCAAATCA  1773

Query 1018  CACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCAG  1091
            ||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 1774  CACCTTGAAAGACATAGGAGAATTCACACTGGTGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCAG  1847

Query 1092  ACGTGATTCACACCTGGCACAACATACTGTAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCA  1165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848  ACGTGATTCACACCTGGCACAACATACTGTAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCA  1921

Query 1166  AGACCTTCGTTCAAAATTCATCTCTTGTAATGCATAAGGTCATTCATACTGGAGAGAAACGTTACAAGTGTAAT  1239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1922  AGACCTTCGTTCAAAATTCATCTCTTGTAATGCATAAGGTCATTCATACTGGAGAGAAACGTTACAAGTGTAAT  1995

Query 1240  GAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCATGTCATCGTAGACTTCATACTGGAGAGAAACCTTA  1313
            |||||||||||...|||||||||||||||||.||||||||.|||||.|||||||||||||||||||||||||||
Sbjct 1996  GAATGTGGCAAAAGTTTTAATCACAAATCAAGCCTTGCATATCATCATAGACTTCATACTGGAGAGAAACCTTA  2069

Query 1314  CAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAACGTCATCATAGACTTCATACTGGAA  1387
            |||||||||||||||||||||||||||||....|.|.|||.|.||||.|.|||||||||||||||||||||||.
Sbjct 2070  CAAGTGTAATGAATGTGGCAAGGTTTTTAGGACACAGTCACAACTTGCATGTCATCATAGACTTCATACTGGAG  2143

Query 1388  AGAAATCT------------------------------------------------------------------  1395
            |||||.||                                                                  
Sbjct 2144  AGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAATATCAAATCACACCTTGAAATACATAGGAGAGTT  2217

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2218  CATACTGGAGAGAAACCATACAAATGTAGGGTTTGCGACAAGGCTTTTGGGCGTGATTCATACCTTGCACAACA  2291

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2292  TCAGAGAGTTCACACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCAAGTGTTACTCACACC  2365

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2366  TGGCACAACATACTAGAATTCATACTGGAGAGAAACCTTTCAAGTGTAGTGAGTGTGGCAAAGCCTTTCGTGCA  2439

Query 1396  ---------------------------------------------------  1395
                                                               
Sbjct 2440  CAGTCAACACTTATTCACCATCAGGCAATCCATGGTGTAGGGAAACTTGAC  2490

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.