Nucleotide Global Alignment

Description

Query:
TRCN0000476486
Subject:
XM_017027443.1
Aligned Length:
1645
Identities:
1197
Gaps:
272

Alignment

Query    1  ---------------------------------------------------------------ATGGCTCTTCC  11
                                                                           |||       |
Sbjct    1  ATGCACTGTCAGCTCACTGTGGACCAGGATTGGAGCAGCTGCCAATGGGAGTCACGTATTAATATG-------C  67

Query   12  TC-AGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCT  84
            .| |.||||||.|||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   68  ACGAAGGTCTATTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCT  141

Query   85  CAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCTCTTCCAAATG  158
            |||||||||.|||||||.|||||||||||||||||||||||||||||.|||||||||||||.||||||||||||
Sbjct  142  CAGAGGACTTTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTCGTCTCCCTGGATATCTCTTCCAAATG  215

Query  159  CATGATGAAGATGTTCTCATCAACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATG  232
            ||||.||||||.|||.||.||||||||.||||||||||||||||||.|||||||||||||||||||.|.|||.|
Sbjct  216  CATGTTGAAGACGTTGTCGTCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCACAGACAAG  289

Query  233  CAAGTCATCACATTGGAGATACTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAA  306
            |||||||||||||||||||...|||.|||||.||||||||||||||.|||||||.|||.|.||||||||||.||
Sbjct  290  CAAGTCATCACATTGGAGAATTTTGTTTCCATGAAATTGAGAAAGACATTCATGGCTTCGAGTTTCAGTGGAAA  363

Query  307  GAAAATGAAACAAATGGCCATGAAGCACTCATGACAAAAATCAAAAAGTT-GATGAGTAGTACAGAGCGACATG  379
            |||.||||||||||||||||||.|||||.|||||||.||||||||.|||| |.|| |||||||||..|.|||||
Sbjct  364  GAAGATGAAACAAATGGCCATGCAGCACCCATGACAGAAATCAAAGAGTTGGCTG-GTAGTACAGGCCAACATG  436

Query  380  ATCAAAGGCATGCTGGAAACAAACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTG  453
            ||||||||||||||||||||||.|.|||||||.||.|||||||||||||||||||||.|||||||||||||..|
Sbjct  437  ATCAAAGGCATGCTGGAAACAAGCGTATTAAAGATCAGCTTGGATCAAGCTTTCATTTGCATCTGCCTGAACCG  510

Query  454  CACATATTTCACCCCGAAGGGAAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGC  527
            |||||||||||..|.||||||||||||||||||||||||||||||.||||||||.||||||.||||||||||.|
Sbjct  511  CACATATTTCAGTCTGAAGGGAAAATTGGTAATCAAGTTGAGAAGTCTATCAACAATGCTTCCTCAGTTTCAAC  584

Query  528  ATCCCAACGAATTTCCTGTAGGCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCAT  601
            |||||||.||||||..||||||||.|||||.|.||||||||||||||||.|.|||||||.||||||.|||||||
Sbjct  585  ATCCCAAAGAATTTGTTGTAGGCCCAAAACCCATATTTCTAATAAGTATGGAAATAATTCCCTCCATTCTTCAT  658

Query  602  TACTCACACAAAAACGGGAAGTACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAAT  675
            ||||||||||||||.||||||||||||..||||||||||||||..||.|||...||||...||||.||||||||
Sbjct  659  TACTCACACAAAAATGGGAAGTACACATGAGAGAAAAATCTTTTGAATGTATACAGAGCTTCAAATCCTTTAAT  732

Query  676  GGTAGCTCACTCTTAAAAAAACATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAA  749
            .|.|||||||||||||||||||||||||||||.||.||||.|||.|||||.|.|||||||||||||||.|||||
Sbjct  733  TGCAGCTCACTCTTAAAAAAACATCAGATAATTCACTTAGAAGAGAAACAATGTAAATGTGATGTATGTGGCAA  806

Query  750  GGACTTTCATCAGAAGCGATACCTTGCATGCCA---TAGATGTCACACTGGTGAGAATCCTTACAAGTGTAATG  820
            ||.||||.|||||||||||||||||||.|||||   |||||||||||||||||||||.||||||||||||||||
Sbjct  807  GGTCTTTAATCAGAAGCGATACCTTGCCTGCCATCGTAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATG  880

Query  821  AGTGTGGCAAGACATTCAGTCACAATTCAGCCCTGTTAGTTCACAA----------------------------  866
            |||||||||||||.||..||||.||||||.||||.||..|||||||                            
Sbjct  881  AGTGTGGCAAGACCTTTGGTCATAATTCATCCCTCTTCATTCACAAAGCGCTTCATACTGGAGAGAAACCTTAT  954

Query  867  --------------------------------------------------------------------------  866
                                                                                      
Sbjct  955  GAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAAGAGGATTCATACTGGAGA  1028

Query  867  ------------------------------------------------------GGCAA------------TTC  874
                                                                  |||||            |||
Sbjct 1029  GAAACCATACAAATGTAAGGTTTGTGATGAGGCTTTCGCATATAATTCATATCTGGCAAAACATACTATACTTC  1102

Query  875  ATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCACGTCAT  948
            |.|||||||||||||||||||..|||||||||||||||||.||||||||||.||.|||||.|||||||||.|||
Sbjct 1103  ACACTGGAGAGAAACCTTACACATGTAATGAATGTGGCAAAGTTTTTAATCGACTATCAACCCTTGCACGCCAT  1176

Query  949  CATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCT  1022
            ||||||.||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct 1177  CATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAGTGTGACAAAGTTTTCAGTCGCAAATCACACCT  1250

Query 1023  TGAAAGACATAGGAGAATTCACACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCAGACGTG  1096
            |||||||||||||||.|||||.|.||||||||||||.|||||||||.|.|..|||..|||.|.||||||.||..
Sbjct 1251  TGAAAGACATAGGAGGATTCATAGTGGAGAGAAACCTTACAAATGTGAAGAATGTTGCAAAGTTTTCAGTCGCA  1324

Query 1097  ATTCACACCTGGCACAACATACTGTA--ATTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGA  1168
            |.|||.||||||  .||.|.||.|.|  |||||.||||||||||||||.|||||.|||||.|..||||.||||.
Sbjct 1325  AATCAAACCTGG--AAAGACACAGGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGG  1396

Query 1169  CCTTCGTTCAAA---ATTCATCTCTTGTAATGCATAAGGTCA-----TTCATACTGGAGAGAAACGTTACAAGT  1234
            |.|||   ||.|   ||||| |.|.||    |||.||..|||     ||||||||||||||||||.||||||||
Sbjct 1397  CTTTC---CAGAGGGATTCA-CACCTG----GCACAACATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGT  1462

Query 1235  GTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCATGT----CATCGTAGACTTCATACTGGAGA  1304
            |||||||.|||||||||...||...|||.|.||||    |.||.|.|    ||||||||.||||||||||||||
Sbjct 1463  GTAATGAGTGTGGCAAGACCTTCGGTCAGACATCA----TCGCTTATAATCCATCGTAGGCTTCATACTGGAGA  1532

Query 1305  GAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAACGTCATCATAGACTTC  1378
            |||||||||||||||||||||.|||||||||...||.|.||..|..|||..|||||.|...||||||||.||||
Sbjct 1533  GAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTCATCCCTTGTATACCATCATAGGCTTC  1606

Query 1379  ATACTGGAAAGAAATCT  1395
            |||.||||.||||..||
Sbjct 1607  ATAGTGGAGAGAAGCCT  1623

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