Nucleotide Global Alignment

Description

Query:
TRCN0000476486
Subject:
XM_024451688.1
Aligned Length:
2165
Identities:
1082
Gaps:
940

Alignment

Query    1  ATGGCTCTTCCTCAGGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCT  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CTTCCAAATGCATGATGAAGATGTTCTCATCAACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTG  222
                       ||||||||||..||||..||||||||.||||||||||||||||.|.|||||||||||||||||
Sbjct    1  -----------ATGATGAAGACATTCTTCTCAACAGGGCAAGGCAATACAGAAGCGTTCCACACAGGGACATTG  63

Query  223  CAAATACATGCAAGTCATCACATTGGAGATACTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTT  296
            ||||.|||.|||||||||||||||||||||..||||||||||.|||||||||||||.|||||||.|||...|||
Sbjct   64  CAAAGACAAGCAAGTCATCACATTGGAGATTTTTGCTTCCAGAAAATTGAGAAAGACATTCATGGCTTCCAGTT  137

Query  297  TCAGTGGCAAGAAAATGAAACAAATGGCCATGAAGCACTCATGACAAAAATCAAAAAGTTGA-TGAGTAGTACA  369
            |||||||.|||||.||||||||||||.|||||.|||||.|||||||.||||||||.|||||| || ||||||||
Sbjct  138  TCAGTGGAAAGAAGATGAAACAAATGACCATGCAGCACCCATGACAGAAATCAAAGAGTTGACTG-GTAGTACA  210

Query  370  GAGCGACATGATCAAAGGCATGCTGGAAACAAACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCT  443
            |..|.|||||||||||||||||||||||||||.|.|||||||.||.|||||||||.||||||||||||||||||
Sbjct  211  GGCCAACATGATCAAAGGCATGCTGGAAACAAGCATATTAAAGATCAGCTTGGATTAAGCTTTCATTCGCATCT  284

Query  444  GCCTGAAGTGCACATATTTCACCCCGAAGGGAAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCT  517
            |||||||.|||||||||||||.||.||||||||||||||||||||||||||||||.||||||||.||||||.||
Sbjct  285  GCCTGAACTGCACATATTTCAGCCTGAAGGGAAAATTGGTAATCAAGTTGAGAAGTCTATCAACAATGCTTCCT  358

Query  518  CAGTTTCAGCATCCCAACGAATTTCCTGTAGGCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTC  591
            ||||||||.||||||||.||||||..||||||||.|||||.|.||||||||||||||||.|.|||||||.||||
Sbjct  359  CAGTTTCAACATCCCAAAGAATTTGTTGTAGGCCCAAAACCCATATTTCTAATAAGTATGGAAATAATTCCCTC  432

Query  592  CAGTCTTCATTACTCACACAAAAACGGGAAGTACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAA  665
            ||.||||||||||||||||||||||||.|.|||||||..||||||||||||||||||.|||.||||||||||||
Sbjct  433  CATTCTTCATTACTCACACAAAAACGGAATGTACACATGAGAGAAAAATCTTTCCAATGTATTGAGAGTGGCAA  506

Query  666  AGCCTTTAATGGTAGCTCACTCTTAAAAAAACATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATG  739
            |.||||||||.||||||||||.|||||||||||||||||||.|||.||||.|||.|||||.|.|||||||||||
Sbjct  507  ATCCTTTAATTGTAGCTCACTTTTAAAAAAACATCAGATAACCCACTTAGAAGAGAAACAATGTAAATGTGATG  580

Query  740  TATGCGGCAAGGACTTTCATCAGAAGCGATACCTTGCATGCCA---TAGATGTCACACTGGTGAGAATCCTTAC  810
            |||..|||||||..|||.|||||||||||||||||||||||||   |||||.|||||.||.||||||.||||||
Sbjct  581  TATATGGCAAGGTATTTAATCAGAAGCGATACCTTGCATGCCATCGTAGATCTCACATTGATGAGAAACCTTAC  654

Query  811  AAGTGTAATGAGTGTGGCAAGACATTCAGTCACAATTCAGCCCTGTTAGTTCACAAGGC---------------  869
            ||||||||||||||||||||||..||..||||||||.||.||||.||..||||||||||               
Sbjct  655  AAGTGTAATGAGTGTGGCAAGATCTTTGGTCACAATACATCCCTCTTCCTTCACAAGGCGCTTCATACTGCAGA  728

Query  870  --------------------------------------------------------------------------  869
                                                                                      
Sbjct  729  CAAACCTTATGAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAACACATAAGATAATTT  802

Query  870  --------------------------------------------------------------------------  869
                                                                                      
Sbjct  803  ATACTGGAGGGAAACCATACAAATGTAAGGTTTGTGACAAAGCTTTCACATGTAATTCATACCTAGCAAAACAT  876

Query  870  -----AATTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCT  938
                 ||||||.|||||||||||||||||||||||||||||||||||||||||||||||||.||..||||.|||
Sbjct  877  ACTATAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGACTGTCAACCCT  950

Query  939  TGCACGTCATCATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCA  1012
            ||||||.||||.|||..||||||||||||||||||||||..||||||||||||||||.||||||||||||||||
Sbjct  951  TGCACGCCATCGTAGGCTTCATACTGGAGAGAAACCTTATGAATGTGAAGAATGTGAAAAAGTTTTCAGTCGCA  1024

Query 1013  AATCACACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCT  1086
            |||||||.|||||||||||||.|||.|||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025  AATCACATCTTGAAAGACATAAGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCT  1098

Query 1087  TT--CAGACGTGATTCACACCTGGCACAACATACTGTAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAG  1158
            ||  ||.|  |.|||||.||||||||.||||||.|.|||||||||||||||||||.|||||||||||||||||.
Sbjct 1099  TTTGCATA--TAATTCATACCTGGCAAAACATAGTATAATTCACACTGGAGAGAAGCCTTACAAGTGTAATGAA  1170

Query 1159  TGTGGCAAGACCTTCGTTCAAAATTCATCTCTTGTA----ATGCATAAGGTCATTCATACTGGAGAGAAACGTT  1228
            |||||||||...||...||||.|.|||.||||||.|    || ||||  |.| |||||||||.||||||||..|
Sbjct 1171  TGTGGCAAGGTTTTTAATCAACAATCAACTCTTGCACGCCAT-CATA--GAC-TTCATACTGCAGAGAAACCAT  1240

Query 1229  ACAAGTGTAATGAATGTGGCAAGGTTTTTAATCA----CAAATCAAACCTTG----------------------  1276
            ||||.|||.|.|||||||.|||.||||    |||    |||||||.||||||                      
Sbjct 1241  ACAAATGTGAAGAATGTGACAAAGTTT----TCAGGTGCAAATCACACCTTGAAAGACATAGGAGGATTCATAC  1310

Query 1277  -----------------------------------------------------CATG---------TCATCGTA  1288
                                                                 ||||         .||||..|
Sbjct 1311  TGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGTGATTCATGCCTTACAGAACATCAGA  1384

Query 1289  GACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAA  1362
            ||.|||||||||||||||||||.||||.||||||||||||||||||||||||||.|..||||.|||||||||.|
Sbjct 1385  GAGTTCATACTGGAGAGAAACCATACATGTGTAATGAATGTGGCAAGGTTTTTAGTACAAAAGCAAACCTTGCA  1458

Query 1363  CGTCATCATAGACTTCATACTGGAAAGAAATCT-----------------------------------------  1395
            .|||||||||.|||||||||||.|.|||||.|.                                         
Sbjct 1459  TGTCATCATAAACTTCATACTGCAGAGAAACCGTACAAATGTGAAGAATGTGAGAAAGTTTTCAGTCGCAAATC  1532

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1533  ACACATGGAAAGACATAGGAGGATTCATACTGGAGAGAAACCGTACAAATGTAAGGTTTGTGACAAGGCTTTCC  1606

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1607  GGAGGGATTCACACCTGGCACAACATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGC  1680

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1681  AAGACCTTCCGTCAGACATCATCGCTTATAATCCATCGTAGGCTTCATACTGGAGAGAAACCTTACAAGTGTAA  1754

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1755  TGAGTGTGGCAAGACCTTCAGTCAGATGTCATCCCTCGTATACCATCATAGGCTTCATAGTGGAGAGAAACCTT  1828

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1829  ACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAAGCACACCTTGCACAGCATCAGAGAGTTCATACTGGA  1902

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1903  GAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTCAAACCTTGTATACCATCATAGACT  1976

Query 1396  -------------------  1395
                               
Sbjct 1977  TCATAGTGGAGAGAAACCT  1995

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.