Nucleotide Global Alignment

Description

Query:
TRCN0000476486
Subject:
XR_002958314.1
Aligned Length:
4430
Identities:
1209
Gaps:
3041

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGTGAAGGTCACGTCGCCATGATATCTCTTCCAAATGCTTGATGAAAAAGGTGGAAGGGTCACTTGACCCAGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAGTTGAAGGCTGCAGTGAGCCCTGTTTTTGCCACCACACTCCAGCCTGGGATTGATTTCTAAAGACTCATGTT  148

Query    1  -------------------------------------------ATGGCTCTTCCTCAGGGTCTACTGACATTCA  31
                                                       |||||||||||||||||.|...||||.||||
Sbjct  149  ACGTGAGGAAGCAGCTCAGAAGAGGAAAGGAAAGGAGTCAGGCATGGCTCTTCCTCAGGGACGCTTGACTTTCA  222

Query   32  GGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGAC  105
            ||||||||||.|||||||||||...||..||||||||||.||||.|||||||.||||||.||.|.|||||.||.
Sbjct  223  GGGATGTGGCTATAGAATTCTCATTGGCAGAGTGGAAATTCCTGAACCCTGCACAGAGGGCTTTGTACAGGGAA  296

Query  106  GTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGGATACCTCTTCCAAATGCATGATGAAGATGTTCTCATC  179
            ||||||.|||||||.||.||||||||||...|..||||||.||||||||||..||||||||||..|.|||..||
Sbjct  297  GTGATGTTGGAGAACTACAGGAACCTGGAGGCTGTGGATATCTCTTCCAAACACATGATGAAGGAGGTCTTGTC  370

Query  180  AACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATGCAAGTCATCACATTGGAGATA  253
            ||||||.||||||||||.|||||||.|||||||||||||||||||||.||||..||||.|||||||||||||..
Sbjct  371  AACAGGGCAAGGCAATAGAGAAGTGATCCACACAGGGACATTGCAAAGACATCAAAGTTATCACATTGGAGACT  444

Query  254  CTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAAGAAAATGAAACAAATGGCCAT  327
            .||||||||||||||||||||||||.||||||.||.|||.|||||||||.||||||.||||||.||||||||||
Sbjct  445  TTTGCTTCCAGGAAATTGAGAAAGAAATTCATAACATTGAGTTTCAGTGTCAAGAAGATGAAAGAAATGGCCAT  518

Query  328  GAAGCACTCATGACAAAAATCAAAAAGTTGA-TGAGTAGTACAGAGCGACATGATCAAAGGCATGCTGGAAACA  400
            |||||||.||.|||||||||.|||||||||| || ||||.|||||.|.|||||||||.||||||||||||||||
Sbjct  519  GAAGCACCCACGACAAAAATAAAAAAGTTGACTG-GTAGCACAGACCAACATGATCACAGGCATGCTGGAAACA  591

Query  401  AACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTGCACATATTTCACCCCGAAGGG  474
            |.|||||||||.||.|||||||||||||||||.||||.||||||||||||.|.|||||||||||...|.||||.
Sbjct  592  AGCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGAACTCCACATATTTCAGATCAAAGGT  665

Query  475  AAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGCATCCCAACGAATTTCCTGTAG  548
            .||||||.|||||||.||||||||.|||.||..|||||||.||||||||||.||||||||.|||||||||||||
Sbjct  666  GAAATTGCTAATCAACTTGAGAAGTCTACCAGTGATGCTTCCTCAGTTTCAACATCCCAAAGAATTTCCTGTAG  739

Query  549  GCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCATTACTCACACAAAAACGGGAAG  622
            |||..|||..|.||||||||||||.|||.||||||||..|||..|.||||||||||||.|||||||||.|||||
Sbjct  740  GCCCCAAATCCATATTTCTAATAACTATGGGAATAATCCCCTGAATTCTTCATTACTCCCACAAAAACAGGAAG  813

Query  623  TACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAATGGTAGCTCACTCTTAAAAAAA  696
            ||||||..||||||||||||||||.|.||||||||||||||||||||||||||.|||||||||||||||..|||
Sbjct  814  TACACATGAGAGAAAAATCTTTCCCATGTAATGAGAGTGGCAAAGCCTTTAATTGTAGCTCACTCTTAAGGAAA  887

Query  697  CATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAAGGACTTTCATCAGAAGCGATA  770
            ||.||||||..||||||||||||||||||.|||||||||||||||||.||||||..||||.||||.||||.|||
Sbjct  888  CACCAGATACCCCATTTAGGAGACAAACAATATAAATGTGATGTATGTGGCAAGCTCTTTAATCACAAGCAATA  961

Query  771  CCTTGCATGCCA---TAGATGTCACACTGGTGAGAATCCTTACAAGTGTAATGAGTGTGGCAAGACATTCA---  838
            ||||||||||||   |||||||||||||||.|||||.||||||||||||||.||||||||.|||.|.||||   
Sbjct  962  CCTTGCATGCCATCGTAGATGTCACACTGGAGAGAAACCTTACAAGTGTAAAGAGTGTGGAAAGTCCTTCAGTT  1035

Query  839  --------------------------------------------------------------------------  838
                                                                                      
Sbjct 1036  ACAAGTCATCCCTTACATGCCATCATAGACTTCATACTGGAGTAAAACCTTACAAGTGTAATGAGTGTGGCAAG  1109

Query  839  -------GTCACAATTCAGCCCTGTTAGTTCACAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGA  905
                   ||||.|||||||||||..||.||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 1110  GTCTTTCGTCAAAATTCAGCCCTTGTAATTCATAAGGCAATTCATACTGGAGAGAAACCTTACAAGTGTAATGA  1183

Query  906  ATGTGGCAAGGTTTTTAATCAA----------------------------------------------------  927
            |||||||||||.||||||||||                                                    
Sbjct 1184  ATGTGGCAAGGCTTTTAATCAACAATCACACCTTTCACGCCATCAAAGACTTCATACTGGAGTGAAACCTTACA  1257

Query  928  --------------------------------------------------------------------------  927
                                                                                      
Sbjct 1258  AATGTAAGATTTGTGAGAAGGCTTTTGCGTGTCATTCCTATCTGGCAAACCATACTAGAATTCATAGTGGAGAG  1331

Query  928  ------------------------------------------CAATCAAACCTTGCACGTCATCATAGAGTTCA  959
                                                      |||||||.|||||||||||||||||.|.||||
Sbjct 1332  AAAACATACAAGTGTAATGAGTGTGGTAAGGCTTTTAATCATCAATCAAGCCTTGCACGTCATCATATACTTCA  1405

Query  960  TACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATA  1033
            ||||||||||||||||||||||||||||||||||||||||||||||||||..||||||..||||||.|||||||
Sbjct 1406  TACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCAGAAATCAACCCTTGAGAGACATA  1479

Query 1034  GGAGAATTCACACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCAGACGTG--ATTCACACC  1105
            .|||||||||.|||||||||||||||||||||||||||||||||||.|..||||||  |||||  |||||||.|
Sbjct 1480  AGAGAATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGATACAGCTTTC--ACGTGTAATTCACAGC  1551

Query 1106  TGGCACAACATACTGTAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTC------  1173
            ||||||.|||||....|||||||||||||||||||.||||||||||||||||||||.|||||||||||      
Sbjct 1552  TGGCACGACATAGAAGAATTCACACTGGAGAGAAAACTTACAAGTGTAATGAGTGTCGCAAGACCTTCAGCCGC  1625

Query 1174  ------------------------------------GTTCAAAA---TT-------------------------  1183
                                                |.|.||||   ||                         
Sbjct 1626  AGGTCATCCCTTCTATGCCATCGTAGACTTCATAGTGGTGAAAAACCTTACAAGTGTAATCAGTGTGGCAATAC  1699

Query 1184  --------------CATCTCTTGTA-------------------------------------------------  1194
                          ||||.||||||                                                 
Sbjct 1700  CTTCCGTCACCGGGCATCCCTTGTATACCATCGTAGACTTCACACTCTAGAGAAATCTTACAAATGTACGGTTT  1773

Query 1195  --------------ATGCATAA---GGTC------------------ATTCATACTGGAGAGAAACGTTACAAG  1233
                          ||||.|||   .|||                  |||||.||||.|.||||||.|||||||
Sbjct 1774  GTAACAAGGTTTTCATGCGTAATTCAGTCCTGGCTGTACATACTAGAATTCACACTGCAAAGAAACCTTACAAG  1847

Query 1234  TGTAATGAATGTGGCAAGGTTTTTAATCACAAATCAAACCTTGCATGTCATCGTAGACTTCATACTGGAGAGAA  1307
            ||||||||||||||.||.|.|||||||||..|||||.|.|||.||.||||||||||||||||||||||||||||
Sbjct 1848  TGTAATGAATGTGGGAAAGCTTTTAATCAACAATCACATCTTTCACGTCATCGTAGACTTCATACTGGAGAGAA  1921

Query 1308  ACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAACGTCATCAT---AGACTTC  1378
            |||||||||.|||.|.|.|||||.|||.||||||..||..||||||...|||||  |||| |||   |||.|||
Sbjct 1922  ACCTTACAAATGTGAAGCATGTGACAAAGTTTTTGGTCAGAAATCAGCTCTTGA--GTCA-CATAAGAGAATTC  1992

Query 1379  ATACTGGAAAGAAATCT---------------------------------------------------------  1395
            ||||||||.|||||.|.                                                         
Sbjct 1993  ATACTGGAGAGAAACCATACAGATGTCAGGTTTGTGACACAGCTTTCACGTGGAATTCACAGCTGGCACGACAT  2066

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2067  ACAAGAATTCACACTGGAGAAAAAACTTACAAGTGTAATGAGTGTGGGAAGACCTTCAGTTACAAGTCATCACT  2140

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2141  TGTATGGCATCGTAGACTTCATGGTGGAGAGAAATCTTACAAATGTAAGGTTTGTGACAAGGCTTTCGTGTGTC  2214

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2215  GTTCCTATGTGGCAAAACATACTAGAATTCACAGTGGAATGAAACCTTACAAGTGTAATGAGTGCAGCAAGACC  2288

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2289  TTCAGTAACAGGTCATCCCTTGTATGCCATCGTAGAATTCATAGTGGTGAGAAACCTTACAAGTGTAGTGAGTG  2362

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2363  CAGCAAGACGTTCAGTCAGAAGGCAACCCTTCTATGCCATCGTAGACTTCATAGTGGTGAGAAACCTTACAAGT  2436

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2437  GTAACGACTGTGGCAATACCTTCCGTCACTGGTCATCCCTTGTATACCATCGTAGACTTCATACTGGAGAGAAA  2510

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2511  TCTTACAAATGTACGGTTTGTGACAAGGCTTTCGTGCGTAATTCATACCTGGCAAGACATATTAGAATTCACAC  2584

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2585  TGCAGAGAAACCTTACAAGTGTAATGAATGTGGAAAGGCTTTTAATGAACAATCACACCTTTCACGTCATCATA  2658

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2659  GAATTCATACTGGAGAGAAACCTTACAAATGTGAAGCATGTGACAAAGTTTTCAGTCGCAAATCACACCTTAAA  2732

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2733  AGACATAGGATAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAGCCTTTAGTGACCGGTC  2806

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2807  AACACTTATTCACCATCAGGCAATTCATGGTATAGGGAAATTTGATTAATATAATGATTGTCACAAAGTCTTCA  2880

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2881  GTAACACTACAACAATTGCAAATCATTGGAGAATCCATGATGAAGAGAAATCTTCTGAGTGTAATAAATGTGGC  2954

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2955  ATGTTTTTCAGACATTGTTCATACATTGCAGTTCATTGGCAACCTCATACTGGAGAGAAACCTTACAAATGTCA  3028

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3029  TGATTGAGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACAGGAGAATTCATACAGGAGAGAAACCTCAC  3102

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3103  AAGTGTGATGATTGTGGCAAAGCCTTTACTTCACATTCACACCTCGTTGGACATCAGAGAATCCATACTGGACA  3176

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3177  GAAATCTTGCAAATGTCATCAGTGTGGCAAGGTCTTCAGTCCGAGGTCACTCCTTGCAGAACATGAGAAAATTC  3250

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3251  ATTTTTGAGATAACTGTTCCCAATGCAGCTTTTCAGTAAGTGGTATGCCTGGGAAACATGGTGAGACCCCCGTT  3324

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3325  TCTGCAAAAAATACAAAAATTAGCTGGGAATGATGGCACATGCCTGCAGTATCAACTACTGTGGAGTCTGCAGT  3398

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3399  GGGAGGATGGCTTGAGCCTGGGAGGTCAAGACTATAGTGAGCTGTAATCATGCTACTGCACTCCAGCATGGTTG  3472

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3473  ACAGAGCAAGATGCTGTCTAAAAAAGAATACTTATTGTAAAGTTTGGGTACAGGAATAATGAAGTCATTGATAG  3546

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3547  TTTATGAACAGGCTATGGAGTTGATGCCCAAAAGAAATAAACAGTTTGTAAATGAATAACTTATTTTGAGTTGT  3620

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3621  GACAAGACAATGTTGAAAGTGATGCATGAAGCGGCAGGCAGACCATCCACATCAGTTTTACAGAAAAAAAGTTA  3694

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3695  ATCTTGTTCGTGCTGCAGTGAAGAGAACAGCAAACAGGAGAAACAATAGTCAGGAATTCAATAATAGCCTGGTT  3768

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3769  AACATGATGAAACCCCGTCTCTACTAAAAATACAAAGATTAGCTGGGCACAGTGGTGGGCACCTGTAATCCCAG  3842

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3843  CTACTCAAGAGGCTGAGGCAGAAGAATTGCTTGAACCCGGGAGGCGGAAGTTTCGATGAGCCGGGATCCTGCCG  3916

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3917  TTGCACTCCAGCCTGGGCAACAAGAGCAAACCTCTGTCTAAAACAAACAAACAAAAAGGTCTAGCCCCCTCTCC  3990

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3991  TCCTTTGTCTGCCATCATGGTGTGTGCTTGACTCCACTTCTTGTCATGTCTTCTCACAAGACTTTCAGGATTAA  4064

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4065  GCGGTTTCTGGCCAACAACCAAAAGTAAAATCGTCCGATTTCCCAGTGGATTCGAATGAAAACTGGCAATAAAA  4138

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4139  TCAGGTCCAACTTTAAAAGGAGACATTGGAGAAGAACCAAGCTGGGTCTATAAGGAATTGCACGTGAGATGGCA  4212

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4213  CACATATTTATGCTGTGTGAGCATCATAATCACGTTACTTAAGCTGAAAATGTCACTACCATCTGGAGACTTGG  4286

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4287  ACATGTTTTATTGGGAATATATTTTTTTCTCTCTGAATCTGTTATGAACGCATTGGTTGGGTGGGTTCAGTAAT  4360

Query 1396  ----------------------------------------------------------------  1395
                                                                            
Sbjct 4361  AAACATGTGAGACCTTTCATTTCAAAAAAAAAATTTTAATGACATAATAGATTACCTAAATTTC  4424

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