Nucleotide Global Alignment

Description

Query:
TRCN0000476860
Subject:
XM_017012197.2
Aligned Length:
3702
Identities:
488
Gaps:
3174

Alignment

Query    1  ATGTCTTCCCCGTTGCAAAGAGCTGTGGGAGATACCAAGAGGGCCTTTTCTGCATCTTCTAGTTCCTCTGCCAG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TCTACCCTTTGATGACAGGGACTCAAACCATCCCTCAGAGGGGAATGGCGACTCTTTGTTAGCTGATGAAGACA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CTGACTTTGAAGACAGCTTGAATCGCAATGTGAAGAAGAGAGCAGCAAAACGACCACCGAAAACAACACCGGTG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GCAAAACATCCAAAGAAAGGGTCCCGAGTGGTACATCGTCATAGCCGGAAACAGTCAGAGCCACCAGCCAATGA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TCTTTTCAATGCTGTGAAAGCCGCCAAAAGTGACATGCAGTCTTTGGTAGATGAGTGGCTGGATAGCTACAAGC  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AAGACCAGGATGCAGGATTTCTGGAGCTTGTTAACTTTTTCATCCAATCTTGCGGATGTAAAGGCATTGTGACC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  CCTGAGATGTTCAAGAAGATGTCCAACTCAGAGATCATCCAGCACCTAACAGAGCAGTTTAATGAGGACTCGGG  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  GGACTACCCTCTCATAGCTCCAGGTCCATCCTGGAAGAAGTTCCAGGGCAGCTTCTGTGAATTTGTGAGGACAT  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  TGGTCTGTCAGTGCCAGTACAGCCTCCTCTATGATGGCTTCCCTATGGACGACCTCATCTCCCTGCTCACTGGC  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  CTCTCAGACTCACAAGTCCGCGCCTTCCGTCACACTAGCACCCTGGCTGCTATGAAACTGATGACCTCCCTGGT  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  AAAAGTTGCCCTCCAACTGAGTGTGCACCAAGATAACAATCAGCGTCAGTATGAGGCTGAAAGAAACAAGGGGC  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  CAGGGCAGAGGGCACCTGAGCGGCTGGAGAGCCTGTTGGAGAAACGCAAAGAGCTCCAAGAGCATCAAGAGGAG  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  ATTGAGGGGATGATGAATGCCCTCTTCAGGGGTGTCTTTGTTCATCG------------------GTACAGGGA  944
                     |||||       ||.||||..|.||           ||                  .|.||||||
Sbjct    1  ---------ATGAT-------CTTTTCAATGCTG-----------CGAAAGCTGCCAAAAGTGACATGCAGGGA  47

Query  945  TGTCCTTCCTGAGATCCGTGCTATCTGCATTGAGGAAATTGGGTGTTGGATGCAAAGCTACAGCACGTCTTTCC  1018
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   48  TGTCCTTCCTGAGATCCGTGCTATCTGCATTGAGGAAATTGGGTGTTGGATGCAAAGCTACAGCACGTCTTTCC  121

Query 1019  TCACCGACAGCTATTTAAAATATATTGGTTGGACTCTGCATGATAAGCACCGAGAAGTCCGCCTGAAGTGTGTG  1092
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||.|||
Sbjct  122  TCACCGACAGCTATTTAAAATATATTGGTTGGACTCTGCATGATAAGCACCGAGAAGTCCGCGTGAAGTGCGTG  195

Query 1093  AAGGCCCTGAAAGGGCTGTACGGTAACCGGGACCTGACCACACGCCTGGAGCTCTTCACCAGCCGCTTCAAGGA  1166
            |||||.|||||||||||||||||||||||||||||||||.|||||||||||||||||||..|||||||||||||
Sbjct  196  AAGGCTCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGA  269

Query 1167  CCGGATGGTTTCCATGGTCATGGACAGAGAGTATGATGTGGCAGTGGAGGCTGTCAGATTACTGATACTTATCC  1240
            |.||||||||||||||.||||||||||||||||...|||||||||||||||.||||||||||||||||||||||
Sbjct  270  CTGGATGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCC  343

Query 1241  TTAAGAACATGGAAGGGGTGCTGACGGACGCGGATTGTGAGAGCGTCTACCCCGTTGTGTATGCCTCTCATCGA  1314
            ||                                                                        
Sbjct  344  TT------------------------------------------------------------------------  345

Query 1315  GGCCTGGCCTCTGCCGCAGGCGAATTTCTGTACTGGAAACTCTTCTACCCTGAGTGCGAGATAAGAATGATGGG  1388
                                                |||||.|||||||||||||||||||||||||.||||||
Sbjct  346  ------------------------------------AAACTTTTCTACCCTGAGTGCGAGATAAGAACGATGGG  383

Query 1389  TGGAAGAGAGCAACGCCAGAGCCCAGGCGCCCAGAGGACTTTCTTCCAGCTTCTGCTGTCCTTCTTTGTGGAGA  1462
            |||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  384  TGGAAGAGAGCAACGCCAGAGCCCAGGTGCCCAGAGGACTTTCTTCCAGCTTCTGCTGTCCTTCTTTGTGGAGA  457

Query 1463  GC--GAGCTCCATGACCACGCTGCTTACTTAGTAGACAGTCTGTGGGACTGTGCAGGGGCTCGGCTGAAGGA--  1532
            ||  |||..|.|||||                                                   |.|||  
Sbjct  458  GCAAGAGTGCGATGAC---------------------------------------------------ATGGATC  480

Query 1533  CTGGGAGGGTCTGACAAGCCTGCTGCTGGAGAAGGACCAGAACCTGGGTGATGTGCAGGAGAGCACACTGATAG  1606
            |||       |.|||||.|| ||..|      |||.|  |.||||                ||||         
Sbjct  481  CTG-------CGGACAAACC-GCCCC------AGGGC--GTACCT----------------AGCA---------  513

Query 1607  AAATCCTTGTGTCCAGTGCCCGGCAAGCTTCAGAGGGGCACCCGCCTGTGGG---CCGGGTC--ACTGGGAGGA  1675
                               |||  ||||.||||        .||||..|.||   ||.|.||  .||.|||   
Sbjct  514  -------------------CCG--AAGCATCAG--------GCGCCACTAGGTCTCCAGCTCCTTCTCGGA---  555

Query 1676  AGGGCTTAACCTCTAAGGAGCGCAAGACCCAAGCCGATGACAGGGTGAAGTTGACTGAGCACCTCATCCCCCTG  1749
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 1750  CTGCCCCAGCTCCTGGCCAAGTTCTCAGCTGATGCAGAGAAGGTCACTCCCCTGCTCCAGCTTCTCAGCTGCTT  1823
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 1824  TGACCTCCACATCTACTGCACTGGGCGCTTGGAGAAGCACCTGGAGCTGTTCCTGCAGCAACTCCAGGAGGTGG  1897
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 1898  TGGTGAAGCATGCAGAGCCAGCGGTGCTTGAGGCTGGGGCGCATGCCCTCTACCTGCTCTGTAATCCCGAATTC  1971
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 1972  ACTTTCTTCAGCCGGGCGGACTTTGCCCGCAGCCAGCTAGTAGATTTGCTGACTGACCGCTTCCAGCAGGAGCT  2045
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 2046  TGAAGAGCTGTTACAGTCGTCCTTCCTAGATGAGGATGAGGTATATAATCTGGCAGCCACTCTGAAACGCCTCT  2119
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 2120  CTGCCTTCTACAACACTCATGACCTGACTCGCTGGGAGCTCTATGAGCCATGTTGCCAACTCCTGCAGAAGGCT  2193
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 2194  GTGGACACAGGAGAGGTTCCTCACCAGGTTATCCTGCCAGCCTTGACTCTTGTCTATTTTTCCATTCTCTGGAC  2267
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 2268  ACTAACCCACATTTCTAAATCAGATGCTTCCCAGAAGCAGCTGTCGAGTTTGAGGGACAGAATGGTGGCCTTCT  2341
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 2342  GTGAACTCTGCCAGAGTTGCCTCTCAGATGTGGATACTGAGATCCAGGAGCAGGCTTTTGTCTTATTAAGTGAT  2415
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 2416  CTACTTCTCATCTTTAGCCCTCAGATGATTGTTGGGGGCCGTGATTTCCTTAGGCCACTTGTCTTTTTTCCTGA  2489
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 2490  AGCTACTCTCCAGTCTGAGCTAGCCAGCTTCCTCATGGACCACGTCTTCATCCAGCCGGGAGACCTGGGCAGTG  2563
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 2564  GTGATTCCCAGGAGGATCATTTACAGATAGAGCGGCTACACCAGCGGCGCCGCCTCCTAGCCGGGTTCTGCAAG  2637
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 2638  CTGTTGCTTTATGGGGTGCTGGAGATGGATGCAGCCTCAGATGTTTTCAAACACTACAACAAGTTCTACAATGA  2711
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 2712  CTATGGTGACATTATCAAGGAAACATTAACTAGAGCAAGGCAGATTGACCGAAGTCATTGTTCCCGAATCCTGC  2785
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 2786  TGCTGAGCCTCAAGCAGCTGTACACAGAACTGCTGCAGGAGCATGGGCCCCAGGGCCTGAATGAGCTTCCTGCC  2859
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 2860  TTCATCGAGATGAGGGACCTGGCCCGGAGGTTTGCCTTGAGTTTTGGACCCCAGCAGCTGCAGAACCGTGACCT  2933
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 2934  CGTGGTCATGCTACACAAGGAAGGCATCCAGTTCTCCTTGTCTGAGCTTCCTCCAGCTGGCTCCTCCAATCAGC  3007
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 3008  CTCCAAATCTGGCATTCCTGGAGCTCCTTTCAGAGTTTTCCCCCCGACTCTTCCATCAGGACAAGCAGCTTTTA  3081
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 3082  CTGTCCTATCTAGAAAAGTGCCTGCAGCATGTCTCCCAGGCACCTGGCCATCCCTGGGGCCCAGTCACCACCTA  3155
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 3156  CTGCCACTCCCTCAGCCCTGTGGAGAACACAGCAGAGACCAGCCCTCAGGTCCTCCCCAGCTCCAAGAGGAGGC  3229
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 3230  GCGTTGAAGGGCCTGCCAAGCCTAACAGAGAGGACGTCTCCTCGTCCCAGGAAGAAAGTCTGCAGCTGAACAGC  3303
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 3304  ATCCCGCCCACGCCCACCCTCACCTCCACAGCTGTGAAGAGCAGGCAGCCCCTGTGGGGGTTGAAAGAGATGGA  3377
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 3378  GGAAGAAGATGGCTCAGAGTTGGATTTTGCCCAGGGTCAGCCCGTCGCAGGCACCGAGAGGTCAAGGTTCTTGG  3451
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 3452  GTCCACAATATTTCCAGACTCCACACAACCCTTCAGGTCCTGGCCTGGGCAACCAGCTGATGCGACTCAGCCTT  3525
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 3526  ATGGAAGAGGACGAGGAAGAAGAGTTAGAAATCCAGGATGAGTCAAATGAAGAACGGCAGGATACAGACATGCA  3599
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 3600  AGCAAGTAGCTACTCTTCCACCAGTGAGCGCGGGCTGGACCTCTTAGATTCTACAGAGCTGGATATTGAGGATT  3673
                                                                                      
Sbjct  556  --------------------------------------------------------------------------  555

Query 3674  TC  3675
              
Sbjct  556  --  555

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