Nucleotide Global Alignment

Description

Query:
TRCN0000477691
Subject:
NR_028399.1
Aligned Length:
3550
Identities:
1436
Gaps:
1994

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACGTGAGAGGAGACTTCCGGCCACTGCGTTGTAGTCGGCCCGGCTGCAAAGCGTTTTTCTGCAGGCTGTTTTCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGGTTCCCTCGGCCTGTACCTCGCGCACTCCTCTTGCTCCAGGTCCTTCAGTCTCCGCTCGTCTCACCGTAGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTGTGACGACATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGCCATT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACTACAGGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAACTAAGTTTACAGGCA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AGATCCTACTCACAGAGGCTCTTGGGATCAAGGCTGACAGAAGCTCCATCTGAAGACTTTTATACTATAGAGGC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AGAAAAAGAGTGATGAATCAAGCACTGGCTTCTAAAGCTTCCGCCCAGATGGGAAGCATATCTCCTCTGCTCAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATTTCCCTGACCAAAGCCAGTCACATGGCCATCCTCAGCTTCAGAGAGGTTGGGAAGGCATTCCCACTATGTGT  888

Query    1  ----ATGCCAG----------------GC----GGGGGTCCTCAGGGCGCCC-----CAGCCGCCGCCGGCGGC  45
                |||||||                ||    ..|.|.|||||      ||     ||||..|.||..|.|..
Sbjct  889  CTGGATGCCAGCAACTCAGAAATATTTGCCTTACAGAGACCTCA------CCATTAACAGCATCTGCAAGAGAA  956

Query   46  G------GC--------------------------GGCGTGAGCCAC-----CGCG--------CAGGCAGCCG  74
            |      ||                          ..|.||||..||     ||.|        .|||||||||
Sbjct  957  GATTAAAGCACACGATTACTTTACTCACTGTGTAACACATGAGGAACATGGACGAGATGGGAAAAAGGCAGCCG  1030

Query   75  GGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031  GGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGA  1104

Query  149  CAGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCCCAGGAGGGGTGTCTGGCGAG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105  CAGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCCCAGGAGGGGTGTCTGGCGAG  1178

Query  223  GAGTCCCACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGT  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179  GAGTCCCACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGT  1252

Query  297  TTCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253  TTCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAG  1326

Query  371  GTGGCACCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAGCAAGAGTTTGCA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327  GTGGCACCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAGCAAGAGTTTGCA  1400

Query  445  GCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTCCGGGC  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401  GCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTCCGGGC  1474

Query  519  AGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCCCCCAA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475  AGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCCCCCAA  1548

Query  593  CCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCGGGGAA  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549  CCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCGGGGAA  1622

Query  667  CGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATGGGAGC  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623  CGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATGGGAGC  1696

Query  741  CAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCAGCCCTTCAGTCTCTTGGCTACAC  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1697  CAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCGGCCCTTCAGTCTCTTGGCTACAC  1770

Query  815  GGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTACCAGAC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771  GGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTACCAGAC  1844

Query  889  ATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGCTCAGG  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845  ATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGCTCAGG  1918

Query  963  GGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAACCGGA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919  GGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAACCGGA  1992

Query 1037  GGCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATGATTAT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993  GGCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATGATTAT  2066

Query 1111  GATAAAGCTGAGACGTTACAA------CAAAGATTAGAAGACCTGGAACAAGAGAAAATCAGCCTGCACTTTCA  1178
            |||||||.|||   |||..||      .|..||||    |...||             |||.|.||   |..||
Sbjct 2067  GATAAAGGTGA---GTTTTAATTTGTTTATTGATT----GTTTTG-------------TCATCATG---TCCCA  2117

Query 1179  ACTTCCTTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCAGGCTGCCTTGCGCC  1252
            |.||.|||       .|||.|         |||.||              ||.|       .||.||||     
Sbjct 2118  ATTTTCTT-------TCCATC---------TTTACT--------------CATA-------TCTACCTT-----  2149

Query 1253  GTGGGGCCACTCAGCAGGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCCGAGGCTGTTGGAACCC  1326
                                       .|||..||||.|        |||||.|..|  |..|||||     ||
Sbjct 2150  ---------------------------TTGAATCCCAAA--------AGAATTGTAC--AATCTGTT-----CC  2181

Query 1327  ACTGCTCAGGACAGCTTGCACGTGTCCATCACGAGACGA------GACTGGCTTCTTCAGGA------------  1382
            .|||.|||              |.||.|.||.|    ||      ||||  |||.|.|||.|            
Sbjct 2182  TCTGATCA--------------TCTCTACCAGG----GAATAGTTGACT--CTTTTACAGCATTATTGTTTTGT  2235

Query 1383  -------AAAGCAGCAGCTACA-GAA-----------------AGAAATCGAAGCTCTCCAAGCAAGGATGTTT  1431
                   ||||.|    ||.|| |||                 |.||||..||.||...|||          ||
Sbjct 2236  AGATTTCAAAGTA----CTTCATGAACATTAATCCTTTGGGTTATAAATATAACCTTATCAA----------TT  2295

Query 1432  GTGCTGGAAGCCAAAGATCAACAGCTGAGAAGGGA-------AATAGAGGAGCAAGAGCAGCAACTCCAGTGGC  1498
            ||        |||.|    |||| ||.||.|  .|       ||||.|              ||.|..|.|.||
Sbjct 2296  GT--------CCAGA----AACA-CTTAGCA--TACTCACACAATAAA--------------AATTATATTAGC  2340

Query 1499  AGGGCTGCGACCTGAC--CCCACTGGTGGGCCAGCTGTCCCTGGGTCAGCTGCAGGAGGTCAGCAAGGCCTTGC  1570
                .|||.|||||.|  |||| |||||.|                                            
Sbjct 2341  ----TTGCCACCTGTCTGCCCA-TGGTGTG--------------------------------------------  2365

Query 1571  AGGACACCCTGGCCTCAGCCGGTCAGATTCCCTTCCATGCAGAGCCACCGGAAACCATAAGGAGCCTCCAGGAA  1644
                                                |||.|                         ||      
Sbjct 2366  ------------------------------------ATGTA-------------------------TC------  2372

Query 1645  AGAATAAAATCCCTCAACTTG-TCACTTAAAGAAAT----------CACTACTAAGGTGTG--------TATGA  1699
                ||.|||||    ||||| |||  |||| ||||          |||  |||.|.|.||        |||  
Sbjct 2373  ----TATAATCC----ACTTGTTCA--TAAA-AAATATTCGTCTGACAC--CTATGATATGCTAGGGAATAT--  2431

Query 1700  GTGAGA-AATTCTGCAGCACCCTGAGGAAGAAAGTTA-AC-GATATTGAAACCCAACTACCAGCCTTGCTTGAA  1770
            |.|||| |||                 |.||||||.| || ||.||.|         ||.|.|||   ||||  
Sbjct 2432  GGGAGACAAT-----------------AGGAAAGTAAGACAGACATGG---------TATCTGCC---CTTG--  2474

Query 1771  GCCAAAATGCATGCCATATCAGGAAAC-----CATTTCTGGACGGCTAAAGACCTCACCGAGGAGATTAGATCA  1839
                   || ||||     |||.||||     |.||..|||  ||||      |||       .||.|..||.|
Sbjct 2475  -------TG-ATGC-----CAGTAAACTTAAGCCTTCATGG--GGCT------CTC-------TGACTTCATAA  2520

Query 1840  TT-----AACATCAGAGAGAGAAGGGCTGGAGGGACTCCTCAGCAAGCTGTTGGTGTTGAGTTCCAGGAATGTC  1908
            ||     |||  ||||||.||                     |.||           ||||.|    ||||   
Sbjct 2521  TTTCCAGAAC--CAGAGATAG---------------------GAAA-----------TGAGGT----GAAT---  2553

Query 1909  AAAAAGCTGGGAAGTGTTAAAGAAGATTACAACAGACTGAG--AAGAGAAGTGGAGCACCAGGAGACTGCCTAT  1980
                  .||.|||.|||               |||||||.|  |    |||.||..|||             ||
Sbjct 2554  ------TTGAGAAATGT---------------CAGACTGTGCCA----AAGGGGGTCAC-------------AT  2589

Query 1981  GAAACAAGTGTGAAGGAAAATACTATGAAGTACATGGAAACACTTAAGAATAAACTGTGCAGCTGCAAGTGTCC  2054
            |.|.|||.|.|    ..|.|||| ||                                                
Sbjct 2590  GCATCAAATTT----CCACATAC-AT------------------------------------------------  2610

Query 2055  ACTGCTTGGGAAAGTGTGGGAAGCTGACTTGGAAGCTTGTCGATTGCTTATCCAGAGCCTACAGCTCCAGGAAG  2128
                                                                                      
Sbjct 2611  --------------------------------------------------------------------------  2610

Query 2129  CCAGGGGAAGCCTGTCTGTAGAAGATGAGAGGCAGATGGATGACTTAGAGGGAGCTGCTCCTCCTATTCCCCCC  2202
                                                                                      
Sbjct 2611  --------------------------------------------------------------------------  2610

Query 2203  AGGCTCCACTCCGAGGATAAAAGGAAGACCCCTTTGAAGGAATCTTACATCCTTTCTGCAGAACTTGGAGAAAA  2276
                                                                                      
Sbjct 2611  --------------------------------------------------------------------------  2610

Query 2277  GTGTGAAGACATAGGCAAGAAGCTATTGTACTTGGAAGATCAACTTCACACAGCAATCCACAGTCATGATGAAG  2350
                                                                                      
Sbjct 2611  --------------------------------------------------------------------------  2610

Query 2351  ATCTCATTCAGTCTCTCAGGAGGGAGCTCCAGATGGTGAAGGAAACTCTGCAGGCCATGATCCTGCAGCTCCAG  2424
                                                                                      
Sbjct 2611  --------------------------------------------------------------------------  2610

Query 2425  CCAGCAAAGGAGGCGGGAGAAAGAGAAGCTGCAGCTTCCTGCATGACAGCTGGTGTCCACGAAGCACAAGCC  2496
                                                                                    
Sbjct 2611  ------------------------------------------------------------------------  2610

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