Nucleotide Global Alignment

Description

Query:
TRCN0000477691
Subject:
NR_028400.1
Aligned Length:
3399
Identities:
1537
Gaps:
1733

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACGTGAGAGGAGACTTCCGGCCACTGCGTTGTAGTCGGCCCGGCTGCAAAGCGTTTTTCTGCAGGCTGTTTTCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGGTTCCCTCGGCCTGTACCTCGCGCACTCCTCTTGCTCCAGGTCCTTCAGTCTCCGCTCGTCTCACCGTAGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTGTGACGACATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGCCATT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACTACAGAAGTTTACAGGCAAGATCCTACTCACAGAGGCTCTTGGGATCAAGGCTGACAGAAGCTCCATCTGAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GACTTTTATACTATAGAGGCAGAAAAAGAGTGATGAATCAAGCACTGGCTTCTAAAGCTTCCGCCCAGATGGGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AGCATATCTCCTCTGCTCACATTTCCCTGACCAAAGCCAGTCACATGGCCATCCTCAGCTTCAGAGAGGTTGGG  740

Query    1  ------------------------ATGCCAG----------------GC----GGGGGTCCTCAGGGCGCCC--  28
                                    |||||||                ||    ..|.|.|||||      ||  
Sbjct  741  AAGGCATTCCCACTATGTGTCTGGATGCCAGCAACTCAGAAATATTTGCCTTACAGAGACCTCA------CCAT  808

Query   29  ---CAGCCGCCGCCGGCGGCG------GC--------------------------GGCGTGAGCCAC-----CG  62
               ||||..|.||..|.|..|      ||                          ..|.||||..||     ||
Sbjct  809  TAACAGCATCTGCAAGAGAAGATTAAAGCACACGATTACTTTACTCACTGTGTAACACATGAGGAACATGGACG  882

Query   63  CG--------CAGGCAGCCGGGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCC  128
            .|        .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  883  AGATGGGAAAAAGGCAGCCGGGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCC  956

Query  129  GGGCTACATGAGAAGCTCGACAGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCC  202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  957  GGGCTACATGAGAAGCTCGACAGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCC  1030

Query  203  CAGGAGGGGTGTCTGGCGAGGAGTCCCACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGC  276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031  CAGGAGGGGTGTCTGGCGAGGAGTCCCACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGC  1104

Query  277  CTCTTGGTCCGGAGCCCTGTTTCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCA  350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105  CTCTTGGTCCGGAGCCCTGTTTCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCA  1178

Query  351  CTTTGGGATTCAGCTCAGAGGTGGCACCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTG  424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179  CTTTGGGATTCAGCTCAGAGGTGGCACCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTG  1252

Query  425  GGTGGCAGCAAGAGTTTGCAGCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGAT  498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253  GGTGGCAGCAAGAGTTTGCAGCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGAT  1326

Query  499  GGAGCAAGGCGTGTCCGGGCAGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTG  572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327  GGAGCAAGGCGTGTCCGGGCAGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTG  1400

Query  573  TGGCCCTGAGGTCCCCCCAACCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCT  646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401  TGGCCCTGAGGTCCCCCCAACCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCT  1474

Query  647  CGCTTGGCTCTGCCGGGGAACGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAG  720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475  CGCTTGGCTCTGCCGGGGAACGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAG  1548

Query  721  AGCCCCCAGGAGATGGGAGCCAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCAGCC  794
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1549  AGCCCCCAGGAGATGGGAGCCAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCGGCC  1622

Query  795  CTTCAGTCTCTTGGCTACACGGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTG  868
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623  CTTCAGTCTCTTGGCTACACGGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTG  1696

Query  869  ACATGCATTCTTTACCAGACATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGT  942
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697  ACATGCATTCTTTACCAGACATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGT  1770

Query  943  GATGGGAGCAGCGGCTCAGGGGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGA  1016
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771  GATGGGAGCAGCGGCTCAGGGGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGA  1844

Query 1017  CTGCCTGCTGAGAAACCGGAGGCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATG  1090
            |||||||||||||||||||||||||||||                                             
Sbjct 1845  CTGCCTGCTGAGAAACCGGAGGCAGATGG---------------------------------------------  1873

Query 1091  CAGTTGAGAATGATGATTATGATAAAGCTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAATC  1164
                                     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1874  -------------------------AGCTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAATC  1922

Query 1165  AGCCTGCACTTTCAACTTCCTTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCA  1238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923  AGCCTGCACTTTCAACTTCCTTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCA  1996

Query 1239  GGCTGCCTTGCGCCGTGGGGCCACTCAGCAGGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCCGA  1312
            |||||||||||||||||||||||||||||||                            ||||.|         
Sbjct 1997  GGCTGCCTTGCGCCGTGGGGCCACTCAGCAG----------------------------TGAGTA---------  2033

Query 1313  GGC-TGTTGGAACCCACTGCTCAGGACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCTTCAGGAAAA  1385
              | ||||       |.|| |||         .||..|..||.|||            .|.||||||       
Sbjct 2034  --CTTGTT-------ATTG-TCA---------CCATTTTCCCCTCA------------TGTTTCTTC-------  2069

Query 1386  GCAGCAGCTACAGAAAGAAATCGAAGCTCTCCAAGCAAGGATGTTTGTGCTGGAAGCCAAAGATCAACAGCTGA  1459
                   ||||        .||..||||| |||                        ||.|| |.||.||||| 
Sbjct 2070  -------CTAC--------CTCTCAGCTC-CCA------------------------CATAG-TGAAGAGCTG-  2101

Query 1460  GAAGGGAAATAGAGGAGCAAGAGCAGCAACTCCAGTGGCAGGGCTGCGACCTGACCCCACTGGTGGGCCAGCTG  1533
                      .||||||| ..|||.|.|                   ||   |||||  .|||     |.||..
Sbjct 2102  ----------GGAGGAGC-TTAGCTGTA-------------------GA---GACCC--TTGG-----CTGCCT  2135

Query 1534  TCCCTGGGTCAGCTGCAGGAGGTCAGCAAGG--CCTT----------GCAGGACACCCTGGCCTCAGCCGGTCA  1595
            |.||||||                   ||||  ||||          |.|||      |||            .
Sbjct 2136  TTCCTGGG-------------------AAGGGCCCTTTGTTGGTTGGGAAGG------TGG------------G  2172

Query 1596  GATTCCCTTCCATGCAGAGCCACCGGAAA----CCATAAGGAGC------CTCCAGGAAAGAATAAAATCCCTC  1659
            ||||  ||||    |||||..|   ||.|    ||||..||..|      |||.| |||||||           
Sbjct 2173  GATT--CTTC----CAGAGTGA---GAGATGGCCCATGTGGGTCATGCATCTCTA-GAAAGAA-----------  2225

Query 1660  AACT----TGTCACTTAAAGAAATCACTACTAAGGTGTGTATGAGTGAGAA-ATTCTGCAGCACCCTGAGGAAG  1728
            .|||    ||.|||||   ||.|                   |||.||||| .||||..||             
Sbjct 2226  GACTTTTCTGCCACTT---GACA-------------------GAGAGAGAACCTTCTCAAG-------------  2264

Query 1729  AAAGTTAACGATATTGAAACCCAACTACCAGCCTTGCTTGAAGCCAAAATGCATGCCATATCAGGAAACCATTT  1802
                                                  ||.|||     |||||.|||..||.|  ||.|||.|
Sbjct 2265  --------------------------------------TGCAGC-----TGCATCCCAGGTCTG--AAGCATCT  2293

Query 1803  CT--GGACGGCTAAAGACC--TCACCGAGGAGATTAGATCATTAACATCAGAGAGAGAAGGGCTGGAGGGA--C  1870
            ||  |||     ||..|||  ||           ||                   ||||||  |||.||.|  .
Sbjct 2294  CTTGGGA-----AACTACCCTTC-----------TA-------------------AGAAGG--TGGGGGTAATT  2330

Query 1871  TCCTC------AGCAAGCTGTTGGTGT----TGAGTTCCAGGAATGTCAAA--AAGCTGGGAAGTGTTAAAGAA  1932
            |||||      ||..|||  |||||||    |||            |||.|  ||||      .|||     ||
Sbjct 2331  TCCTCTTGTTGAGGCAGC--TTGGTGTCCTGTGA------------TCATATTAAGC------CTGT-----AA  2379

Query 1933  GATTACAACAGACTGAGAAGAGAAGTGGAGCACCAGGAGACTGCCTATGAAACAAGTGTGAAGGAAAAT-----  2001
            |||  .||||||             |||..|            |||.|| |.|.||.|   |.||||||     
Sbjct 2380  GAT--AAACAGA-------------TGGTCC------------CCTCTG-ACCGAGCG---ATGAAAATCCATC  2422

Query 2002  ---------ACTATG-----AAGTACATG-GAAACACTTAAGAATAAACTGTG-CAGCTGCAAGTGTCCACT--  2057
                     |||.||     .||..|.|| |.||||.||...|.|    |||| ||.|  ||||..||..||  
Sbjct 2423  CTCCTCCTAACTCTGCCCTCCAGCTCCTGAGCAACATTTGCTATT----TGTGTCACC--CAAGGCTCTTCTGA  2490

Query 2058  GCTTGGGAAAGTGTGGGAAGCTGACTTGGAAGCTTGTCGATTGCTTATCCAGAGCCTACAGCTCCAGGAAGCCA  2131
            |.||.|.||..|.|.|..|||.|   |.|..||||        ||.||||||.|.||...|.|||.||      
Sbjct 2491  GATTAGTAATATATAGAGAGCAG---TTGCTGCTT--------CTAATCCAGTGGCTTGTGGTCCTGG------  2547

Query 2132  GGGGAAGCCTGTCTGTAGAAGATGAGAGGCAGATGGATGACTTAGAGGGAGCTGCTCCTCCTATTCCCCCCAGG  2205
                    |||..|||                .||.||.|||||||                            
Sbjct 2548  --------CTGCATGT----------------TTGAATAACTTAGA----------------------------  2569

Query 2206  CTCCACTCCGAGGATAAAAGGAAGACCCCTTTGAAGGAATCTTACATCCTTTCTGCAGAACTTGGAGAAAAGTG  2279
                                                                                      
Sbjct 2570  --------------------------------------------------------------------------  2569

Query 2280  TGAAGACATAGGCAAGAAGCTATTGTACTTGGAAGATCAACTTCACACAGCAATCCACAGTCATGATGAAGATC  2353
                                                                                      
Sbjct 2570  --------------------------------------------------------------------------  2569

Query 2354  TCATTCAGTCTCTCAGGAGGGAGCTCCAGATGGTGAAGGAAACTCTGCAGGCCATGATCCTGCAGCTCCAGCCA  2427
                                                                                      
Sbjct 2570  --------------------------------------------------------------------------  2569

Query 2428  GCAAAGGAGGCGGGAGAAAGAGAAGCTGCAGCTTCCTGCATGACAGCTGGTGTCCACGAAGCACAAGCC  2496
                                                                                 
Sbjct 2570  ---------------------------------------------------------------------  2569

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