Nucleotide Global Alignment

Description

Query:
TRCN0000477990
Subject:
XM_005273496.4
Aligned Length:
2447
Identities:
575
Gaps:
1849

Alignment

Query    1  ATGAGCTGGTCACCTTCCCTGACAACGCAGACATGTGGGGCCTGGGAAATGAAAGAGCGCCTTGGGACAGGGGG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  ATTTGGAAATGTCATCCGATGGCACAATCAGGAAACAGGTGAGCAGATTGCCATCAAGCAGTGCCGGCAGGAGC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGATCCAGATCATGAGAAGGCTGACCCACCCCAATGTGGTG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTGGCGCCCAATGACCTGCCCCTGCTGGCCATGGAGTACTG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTTTGAGAACTGCTGTGGTCTGCGGGAAGGTGCCATCCTCA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  CCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACCTTCATGAAAACAGAATCATCCATCGGGATCTAAAGCCA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTAATACACAAAATTATTGACCTAGGATATGCCAAGGAGCT  518
                                                                         |||||||||||||
Sbjct    1  -------------------------------------------------------------ATGCCAAGGAGCT  13

Query  519  GGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCCTGCAGTACCTGGCCCCAGAGCTACTGGAGCAGCAGA  592
            |||||||||||||||||||||||||||||||||||||||||||||||                           
Sbjct   14  GGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCCTGCAGTACC---------------------------  60

Query  593  AGTACACAGTGACCGTCGACTACTGGAGCTTCGGCACCCTGGCCTTTGAGTGCATCACGGGCTTCCGGCCCTTC  666
                                                                                      
Sbjct   61  --------------------------------------------------------------------------  60

Query  667  CTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAAGTGCGGCAGAAGAGTGAGGTGGACATTGTTGTTAGCGA  740
                                    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   61  ------------------------TGGCATTCAAAAGTGCGGCAGAAGAGTGAGGTGGACATTGTTGTTAGCGA  110

Query  741  AGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTACCCTACCCCAATAATCTTAACAGTGTCCTGGCTGAGC  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  111  AGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTTACCCTACCCCAATAATCTTAACAGTGTCCTGGCTGAGC  184

Query  815  GACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCACCCCCGACAGAGGGGCACGGATCCCACGTATGGGCCC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  185  GACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGCACCCCCGACAGAGGGGCACGGATCCCACGTATGGGCCC  258

Query  889  AATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTTAAAGCTGGTTCATATCTTGAACATGGTCACGGGCAC  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  259  AATGGCTGCTTCAAGGCCCTGGATGACATCTTAAACTTAAAGCTGGTTCATATCTTGAACATGGTCACGGGCAC  332

Query  963  CATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGCAGAGCTTGAAGGCCAGAATCCAACAGGACACGGGCA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  333  CATCCACACCTACCCTGTGACAGAGGATGAGAGTCTGCAGAGCTTGAAGGCCAGAATCCAACAGGACACGGGCA  406

Query 1037  TCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGCCTGGCGTTGATCCCCGATAAGCCTGCCACTCAGTGT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  407  TCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGGGCCTGGCGTTGATCCCCGATAAGCCTGCCACTCAGTGT  480

Query 1111  ATTTCAGACGGCAAG----GTGAGCCCTGGCTTCGTACACAC----------CATCCTGTTTACCTTGGCTGTG  1170
            |||||||||||||||    .||||    |||      |||||          .|||.|||||   ||..||.||
Sbjct  481  ATTTCAGACGGCAAGTTAAATGAG----GGC------CACACATTGGACATGGATCTTGTTT---TTCTCTTTG  541

Query 1171  CCTCCTGGGAAACTCAAC----ACACTTTCAGATTT-----------CAATTCTGCTT-----TGTCA--TGTA  1222
            .|..| .|.|||.|||.|    |.||  ||||||.|           |||     |.|     |||||  ||||
Sbjct  542  ACAAC-AGTAAAATCACCTATGAGAC--TCAGATCTCCCCACGGCCCCAA-----CCTGAAAGTGTCAGCTGTA  607

Query 1223  GTCTGTTAATCACACAGTGC------GGATACCTGGCTGGTTTT------------------------------  1260
            ..||     |||   ||.||      ||| |.||.||  .||.|                              
Sbjct  608  TCCT-----TCA---AGAGCCCAAGAGGA-ATCTCGC--CTTCTTCCAGCTGAGGAAGGTGTGGGGCCAGGTCT  670

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct  671  GGCACAGCATCCAGACCCTGAAGGAAGATTGCAACCGGCTGCAGCAGGGACAGCGAGCCGCCATGATGAATCTC  744

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct  745  CTCCGAAACAACAGCTGCCTCTCCAAAATGAAGAATTCCATGGCTTCCATGTCTCAGCAGCTCAAGGCCAAGTT  818

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct  819  GGATTTCTTCAAAACCAGCATCCAGATTGACCTGGAGAAGTACAGCGAGCAAACCGAGTTTGGGATCACATCAG  892

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct  893  ATAAACTGCTGCTGGCCTGGAGGGAAATGGAGCAGGCTGTGGAGCTCTGTGGGCGGGAGAACGAAGTGAAACTC  966

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct  967  CTGGTAGAACGGATGATGGCTCTGCAGACCGACATTGTGGACTTACAGAGGAGCCCCATGGGCCGGAAGCAGGG  1040

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1041  GGGAACGCTGGACGACCTAGAGGAGCAAGCAAGGGAGCTGTACAGGAGACTAAGGGAAAAACCTCGAGACCAGC  1114

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1115  GAACTGAGGGTGACAGTCAGGAAATGGTACGGCTGCTGCTTCAGGCAATTCAGAGCTTCGAGAAGAAAGTGCGA  1188

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1189  GTGATCTATACGCAGCTCAGTAAAACTGTGGTTTGCAAGCAGAAGGCGCTGGAACTGTTGCCCAAGGTGGAAGA  1262

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1263  GGTGGTGAGCTTAATGAATGAGGATGAGAAGACTGTTGTCCGGCTGCAGGAGAAGCGGCAGAAGGAGCTCTGGA  1336

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1337  ATCTCCTGAAGATTGCTTGTAGCAAGGTCCGTGGTCCTGTCAGTGGAAGCCCGGATAGCATGAATGCCTCTCGA  1410

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1411  CTTAGCCAGCCTGGGCAGCTGATGTCTCAGCCCTCCACGGCCTCCAACAGCTTACCTGAGCCAGCCAAGAAGAG  1484

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1485  TGAAGAACTGGTGGCTGAAGCACATAACCTCTGCACCCTGCTAGAAAATGCCATACAGGACACTGTGAGGGAAC  1558

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1559  AAGACCAGAGTTTCACGGTAACAGCTTGTGTGAGACTCCTGCGATTCCATGTCCTTTCTTTCTATGGCAAAATA  1632

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1633  GAAGAGAAAATGGAAATGCAATCTGGCATTATCCTCAACCTCAGTGTTTGTTTGTTTGCTTGTTTATTTGTGAC  1706

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1707  AGGGTCTCTCTCTCTCACCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCCGCTTCCCGGGT  1780

Query 1261  -----  1260
                 
Sbjct 1781  TCAAG  1785

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