Nucleotide Global Alignment

Description

Query:
TRCN0000478216
Subject:
NM_001366446.1
Aligned Length:
3197
Identities:
1737
Gaps:
1426

Alignment

Query    1  ATGGAGGTCAGAGCTTCATTACA---------------------------------------------------  23
            |||||||||||||||||||||||                                                   
Sbjct    1  ATGGAGGTCAGAGCTTCATTACAGAAGGTTAGTGGATCATCTGATTCTGTGGCTACAATGAACAGTGAAGAATT  74

Query   24  ------------------------------------------------------------GAAGATAGTTTCTA  37
                                                                        ||||||||||||||
Sbjct   75  TGTTTTGGTTCCTCAGTATGCAGATGATAATTCTACAAAACATGAAGAAAAACCTCAACTGAAGATAGTTTCTA  148

Query   38  ATGGTGATGAACAATTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAAGGCCAAGCAGTCTTCTT  111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATGGTGATGAACAATTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAAGGCCAAGCAGTCTTCTT  222

Query  112  GTTGATTGTCAGAGTTCCAGTGAGATTTCAGACCATTCGTTTGGAGATATTCCAGCCAGCCAAACAAATAAGCC  185
            |||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GTTGATTGTCAAAGTTCCAGTGAGATTTCAGACCATTCGTTTGGAGATATTCCAGCCAGCCAAACAAATAAGCC  296

Query  186  ATCTCTTCAGTTAATTTTGGATCCGTCTAACACAGAAATTTCTACACCCAGACCATCTTCTCCAGGTGGACTAC  259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ATCTCTTCAGTTAATTTTGGATCCGTCTAACACAGAAATTTCTACACCCAGACCATCTTCTCCAGGTGGACTAC  370

Query  260  CTGAAGAAGATAGTGTTTTATTTAATAAACTGACCTACTTAGGATGTATGAAGGTTTCTTCCCCACGTAATGAA  333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CTGAAGAAGATAGTGTTTTATTTAATAAACTGACCTACTTAGGATGTATGAAGGTTTCTTCCCCACGTAATGAA  444

Query  334  GTAGAGGCTTTACGGGCAATGGCAACCATGAAATCTTCCAGTCAATACCCCTTTCCTGTTACCCTGTATGTACC  407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTAGAGGCTTTACGGGCAATGGCAACCATGAAATCTTCCAGTCAATACCCCTTTCCTGTTACCCTGTATGTACC  518

Query  408  AAATGTTCCAGAAGGTTCTGTGAGAATTATAGACCAATCCAGCAATGTGGAGATAGCATCTTTTCCAATCTATA  481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AAATGTTCCAGAAGGTTCTGTGAGAATTATAGACCAATCCAGCAATGTGGAGATAGCATCTTTTCCAATCTATA  592

Query  482  AGGTGTTATTCTGTGCACGTGGACATGACGGAACAACAGAGAGCAATTGCTTTGCATTTACAGAGAGTTCCCAT  555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AGGTGTTATTCTGTGCACGTGGACATGACGGAACAACAGAGAGCAATTGCTTTGCATTTACAGAGAGTTCCCAT  666

Query  556  GGTTCGGAAGAATTTCAGATACATGTTTTCTCCTGTGAAATTAAAGAGGCAGTAAGCAGAATTTTGTACAGTTT  629
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGTTCGGAAGAATTTCAGATACATGTTTTCTCCTGTGAAATTAAAGAGGCAGTAAGCAGAATTTTGTACAGTTT  740

Query  630  CTGTACAGCATTCAAACGTTCTTCCAGACAAGTGTCTGATGTTAAAGACTCAGTTATTCCTACCCCCGACAGTG  703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CTGTACAGCATTCAAACGTTCTTCCAGACAAGTGTCTGATGTTAAAGACTCAGTTATTCCTACCCCCGACAGTG  814

Query  704  ATGTGTTTACCTTCAGTGTCTCCTTGGAGGTAAAAGAAGACGATGGAAAAGGAAACTTTAGCCCTGTGCCTAAG  777
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  ATGTGTTTACCTTCAGTGTCTCCTTGGAGGTAAAAGAAGACGATGGAAAAGGAAACTTTAGCCCTGTGCCTAAG  888

Query  778  GATAGAGATAAATTTTATTTCAAATTAAAGCAAGGAATAGAGAAGAAGGTTGTGATTACAGTGCAGCAACTTTC  851
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GATAGAGATAAATTTTATTTCAAATTAAAGCAAGGAATAGAGAAGAAGGTTGTGATTACAGTGCAGCAACTTTC  962

Query  852  TAACAAAGAATTAGCTATTGAAAGATGTTTTGGAATGTTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACA  925
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TAACAAAGAATTAGCTATTGAAAGATGTTTTGGAATGTTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACA  1036

Query  926  TGCATTTACTGGATATGGAATCCATGGGAAAGAGCTATGATGGGAGAGCTTATGTCATCACTGGCATGTGGAAC  999
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGCATTTACTGGATATGGAATCCATGGGAAAGAGCTATGATGGGAGAGCTTATGTCATCACTGGCATGTGGAAC  1110

Query 1000  CCCAATGCACCAGTATTTCTGGCACTTAACGAGGAAACCCCAAAAGATAAGCAAGTATACATGACTGTGGCAGT  1073
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CCCAATGCACCAGTATTTCTGGCACTTAACGAGGAAACCCCAAAAGATAAGCAAGTATACATGACTGTGGCAGT  1184

Query 1074  GGATATGGTAGTCACAGAGGTGGTGGAGCCTGTTCGCTTTCTCCTGGAGACAGTAGTCCGTGTGTACCCTGCAA  1147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GGATATGGTAGTCACAGAGGTGGTGGAGCCTGTTCGCTTTCTCCTGGAGACAGTAGTCCGTGTGTACCCTGCAA  1258

Query 1148  ATGAGCGATTTTGGTATTTCAGCAGAAAGACTTTCACAGAGACCTTCTTCATGAGATTGAAACAGTCTGAGGGA  1221
            |||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1259  ATGAGCGATTTTGGTATTTCAGCAGAAAGACTTTCACAGAGACTTTCTTCATGAGATTGAAACAGTCTGAGGGA  1332

Query 1222  AAAGGCCATACCAATGCTGGAGATGCAATATATGAGGTGGTGAGTCTACAGCGAGAGTCTGACAAGGAGGAACC  1295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AAAGGCCATACCAATGCTGGAGATGCAATATATGAGGTGGTGAGTCTACAGCGAGAGTCTGACAAGGAGGAACC  1406

Query 1296  AGTCACTCCTACTAGTGGAGGGGGTCCAATGTCACCCCAGGATGATGAAGCAGAAGAGGAGAGTGATAATGAAC  1369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AGTCACTCCTACTAGTGGAGGGGGTCCAATGTCACCCCAGGATGATGAAGCAGAAGAGGAGAGTGATAATGAAC  1480

Query 1370  TCTCAAGTGGAACAGGTGATGTGTCTAAGGATTGTCCTGAGAAGATCCTGTATTCTTGGGGAGAGTTGCTAGGA  1443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TCTCAAGTGGAACAGGTGATGTGTCTAAGGATTGTCCTGAGAAGATCCTGTATTCTTGGGGAGAGTTGCTAGGA  1554

Query 1444  AAATGGCACAGTAACCTTGGTGCACGACCGAAAGGGCTGTCTACTCTGGTGAAGAGTGGTGTCCCTGAAGCATT  1517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  AAATGGCACAGTAACCTTGGTGCACGACCGAAAGGGCTGTCTACTCTGGTGAAGAGTGGTGTCCCTGAAGCATT  1628

Query 1518  GAGGGCAGAGGTATGGCAGTTATTGGCAGGCTGCCATGACAACCAGGCAATGCTGGATAGATACCGAATTCTTA  1591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GAGGGCAGAGGTATGGCAGTTATTGGCAGGCTGCCATGACAACCAGGCAATGCTGGATAGATACCGAATTCTTA  1702

Query 1592  TCACAAAG---------CAACAGA-TGAAATTTAGTCTTACACCGAGACAGACTATTCA-CCTA----------  1644
            ||||||||         ||..||| ||    |||   |||| .|||||     |||||| |.||          
Sbjct 1703  TCACAAAGGACTCAGCCCAGGAGAGTG----TTA---TTAC-TCGAGA-----TATTCATCGTACATTTCCCGC  1763

Query 1645  ----------GTTAAATAT------------------GAA-GGGTCTATGAAGGTCTCCATGAC--ACCCTGT-  1686
                      .|||||.||                  ||| .|.||||| |||.|||.||.|.|  ||.|||| 
Sbjct 1764  ACATGATTACTTTAAAGATACTGGAGGAGATGGTCAAGAATCGCTCTAT-AAGATCTGCAAGGCCTACTCTGTG  1836

Query 1687  -------AACCAGCTGCAATTTGACATTAG---------------------ACTTGATGTTCTG-ATTACT---  1728
                   ||             ||||||.|                     .||||.||  ||| ||||||   
Sbjct 1837  TATGATGAA-------------GACATTGGGTACTGTCAAGGGCAGTCTTTTCTTGCTG--CTGTATTACTGCT  1895

Query 1729  ---TAT---------------ACTTTTTGTTTTAGTTCCTTTCCTGAGCCTGAAT--TGTACAAATATG-----  1777
               |||               |.|.|.||||||.|         |||    .|||  |||||.|.||||     
Sbjct 1896  GCATATGCCAGAGGAACAAGCATTCTGTGTTTTGG---------TGA----AAATCATGTACGACTATGGTTTG  1956

Query 1778  -------TCCTAAAACACCAACTT-----------ATT-----------------AAGAGGCTTAATGCCTGT-  1815
                   | |||.|..|.||||||           |||                 .||||.| ||||||..|. 
Sbjct 1957  AGAGACCT-CTACAGAAACAACTTCGAAGATCTTCATTGCAAATTCTACCAGTTGGAGAGAC-TAATGCAGGAA  2028

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2029  CAGCTACCGGACCTGCATAGCCATTTTTCTGATCTGAACCTGGAAGCTCATATGTATGCATCCCAGTGGTTTCT  2102

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2103  CACTCTTTTTACTGCCAAGTTCCCACTCTGCATGGTGTTCCACATCATTGACTTACTGCTTTGTGAGGGTTTGA  2176

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2177  ACATAATCTTTCATGTAGCTTTGGCTCTCCTAAAGACCTCAAAGGAAGACCTTCTGCAGGCTGATTTTGAAGGT  2250

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2251  GCTTTAAAGTTCTTTAGAGTTCAGCTTCCAAAGAGATACAGGGCAGAGGAAAATGCAAGAAGACTGATGGAGCA  2324

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2325  GGCTTGCAATATTAAAGTACCAACCAAGAAGCTGAAGAAATATGAGAAAGAATATCAGACAATGCGAGAGAGTC  2398

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2399  AGCTGCAACAGGAAGACCCAATGGATAGATACAAGAGGGAGAACCGAAGATTACAGGAGGCCAGCATGAGGTTG  2472

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2473  GAACAAGAGAATGATGACCTTGCCCATGAACTAGTAACAAGCAAAATTGCTCTACGGAATGACTTGGATCAGGC  2546

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2547  AGAAGACAAGGCAGATGTGTTGAATAAAGAGCTCCTTTTGACCAAACAGAGGCTGGTGGAGACTGAAGAGGAGA  2620

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2621  AGAGGAAGCAAGAGGAAGAGACTGCCCAGCTAAAAGAAGTCTTCAGGAAACAGCTAGAGAAGGCAGAATATGAA  2694

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2695  ATAAAGAAGACTACAGCTATCATTGCTGAGTATAAACAGATCTGTTCGCAGTTGAGTACCAGGCTGGAGAAACA  2768

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2769  GCAAGCAGCCAGCAAGGAGGAGCTGGAAGTGGTAAAGGGTAAGATGATGGCATGCAAACACTGCAGTGACATTT  2842

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2843  TCAGCAAGGAGGGTGCTTTGAAACTAGCAGCCACAGGCAGAGAGGACCAGGGAATTGAAACAGATGATGAGAAG  2916

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2917  GACTCACTTAAGAAGCAGCTGAGAGAGATGGAACTGGAACTGGCACAAACCAAACTGCAGTTGGTGGAGGCCAA  2990

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2991  GTGTAAAATTCAGGAACTTGAACATCAGAGAGGAGCCCTTATGAATGAAATCCAAGCTGCGAAAAACTCTTGGT  3064

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 3065  TTAGCAAAACCCTGAACTCTATCAAAACGGCCACGGGCACCCAGCCATTGCAGCCAGCACCGGTCACCCAGCCA  3138

Query 1816  ---------------  1815
                           
Sbjct 3139  CCCAAGGAGAGCACA  3153

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.